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Article

A Bayesian Mixture Modelling of Stop Signal Reaction Time Distributions: The Second Contextual Solution for the Problem of Aftereffects of Inhibition on SSRT Estimations

1
Biostatistics Division, Dalla Lana School of Public Health, University of Toronto, 620, 155 College Street, Toronto, ON M5T 3M7, Canada
2
The Hospital for Sick Children, Psychiatry Research, 4274, 4th Floor, Black Wing, 555 University Avenue, Toronto, ON M5G 1X8, Canada
3
Department of Psychiatry, University of Toronto, 8th Floor, 250 College Street, Toronto, ON M5T 1R8, Canada
*
Author to whom correspondence should be addressed.
Brain Sci. 2021, 11(8), 1102; https://doi.org/10.3390/brainsci11081102
Submission received: 4 July 2021 / Revised: 7 August 2021 / Accepted: 19 August 2021 / Published: 21 August 2021
(This article belongs to the Collection Collection on Theoretical and Computational Neuroscience)

Abstract

:
The distribution of single Stop Signal Reaction Times (SSRT) in the stop signal task (SST) has been modelled with two general methods: a nonparametric method by Hans Colonius (1990) and a Bayesian parametric method by Dora Matzke, Gordon Logan and colleagues (2013). These methods assume an equal impact of the preceding trial type (go/stop) in the SST trials on the SSRT distributional estimation without addressing the relaxed assumption. This study presents the required model by considering a two-state mixture model for the SSRT distribution. It then compares the Bayesian parametric single SSRT and mixture SSRT distributions in the usual stochastic order at the individual and the population level under ex-Gaussian (ExG) distributional format. It shows that compared to a single SSRT distribution, the mixture SSRT distribution is more varied, more positively skewed, more leptokurtic and larger in stochastic order. The size of the results’ disparities also depends on the choice of weights in the mixture SSRT distribution. This study confirms that mixture SSRT indices as a constant or distribution are significantly larger than their single SSRT counterparts in the related order. This result offers a vital improvement in the SSRT estimations.

1. Introduction

1.1. Reactive Inhibition

Inhibition refers to the ability to suppress actively, interrupt or delay an action [1]. Inhibition itself is a crucial dimension of executive control, which on its own is required for an organism to adjust behaviour according to changing conditions; this could be assessing inappropriateness of the current course of thought and action, changing goals or changing world [2,3,4]. Response inhibition is the ability to stop responses that are no longer appropriate [3]. Examples of response inhibition in daily life include braking quickly when driving into an intersection while another vehicle is running through a red light [4]. Two paradigms have been suggested to study response inhibition empirically in a laboratory setting: The Go/No-go task and the stop-signal task (SST). The later is widely used [1,5]. The stop-signal paradigm includes two response tasks: the go task and the stop task (e.g., stop 25% of the time). In go trials, the go reaction time (GORT) is the response to the stimulus such as “X” and “O” presented on the computer screen. In stop trials, the stop signal reaction time (SSRT) is the unobserved latency of the stopping response in the brain upon observing the stop signal (e.g., an auditory tone such as “beep”). The stop signal is presented to the participant after the passage of some time called the stop signal delay [6,7]. Often, the adjustment of stop signal delays (SSD or T d ) is made by the more reliable tracking method in which, depending on the previous trial’s success or failure, the T d is increased or decreased by 50 ms to achieve 50% overall successful inhibition at the end of the paradigm. In the go trials and stop signal response trials, the observed reaction times and the unobserved latency of the stopping response (i.e., GORT, SRRT and SSRT, respectively) are measured in milliseconds. In young adults trying to stop continuous actions, such as typing, the SSRT is close to 200 ms [8].
Several models have been proposed to evaluate and describe response inhibition in the stop-signal paradigm including the deadline model, the independent horse race model, the interactive horse race model and the Hanes–Carpenter model [9,10,11,12]. In this study, the independent horse race model is considered. It provides a theoretical framework in which researchers can measure the Stop Signal Reaction Times (SSRT) and its associated factors [13]. There are two types of the horse race model: the independent model with constant SSRT index and the complete independent model with non-constant SSRT distribution. In this study, we focus on the second model (see Figure 1). As the quantification index of the reactive inhibition, SSRT measurement has been a critical tool used by psychopathologists to make inferences about a patient’s ability to inhibit thought and action (i) on the spectrum of clinical groups (e.g., ADHD, OCD, autism and schizophrenia) and (ii) across various tasks and experimental conditions [13]. SSRT measurement’s precise estimation affects such inferences profoundly.

1.2. Estimation Methods: Context and Components

There are several estimation methods of SSRT depending on two contexts in the SST literature: (i) as a constant index, or (ii) as a distribution of non-constant random variable. Within each context, these methods mentioned below refined the earlier proposed methods given their associated contexts (see Figure 2).
Referring to Figure 2 (path 1-1,1-2), there are four estimation methods of SSRT as a constant index: the mean crude method, the Logan 1994 integration method [3], the time series based state-space method [14] (path 1-1), and the weighted method and its mixture equivalent [15] (path 1-2) . Given a subject with go reaction time (GORT) random variable in the go trials with quantile function Q G O R T , n stop signal delays T d , and the probability of successful inhibition(SI) denoted by P ( S I | T d ¯ ) . Then, the first couple of the point indices of constant SSRT in the entire SST cluster are defined as in Equations (1) and (2) (The bar sign denotes average values.). Next, given higher reliability and less bias in the second index versus the first index, the second index has been recommended as the plausible index of constant SSRT [16]. Furthermore, one may transform raw trivariate SST time series data to trivariate state-space time series data using the missing data EM algorithm. Given the EM algorithm log-normally distributed outputs G O R T s s . l n and T d s s . l n , the third point index of constant SSRT is defined as in Equation (3). The fourth index is essentially improvement of the second index under its associated contexts. For the last point index of constant SSRT, partitioning the entire SST cluster into two clusters of type-A SST cluster (trials following a go trial) and type-B SST cluster (trials following a stop trial) and calculating trial-type related Logan 1994 SSRT as S S R T A and S S R T B with corresponding weights W A = # Type A Stop / # Total Stop , W B = 1 W A , the last point index of constant SSRT is defined as in Equation (4):
S S R T C r u d e c = G O R T ¯ T d ¯ ,
S S R T L o g a n 1994 c = Q G O R T ( 1 P ( S I | T d ¯ ) ) T d ¯ ,
S S R T S S . L o g a n 1994 c = Q G O R T s s . l n ( 1 P ( S I | T d s s . l n ¯ ) ) T d s s . l n ¯ ,
S S R T W e i g h t e d c = W A . S S R T A + W B . S S R T B .
Several researchers have shown that merely focusing on measures of central tendency in reaction times RT, including SSRT, gives insufficient information regarding the data’s nature. For instance, different clinical groups may have the same mean reaction times. However, the shape of their distributions differs in several aspects. The differences are in their tails, as seen in an ADHD group compared to the controls [17], or their domain of variance in a schizophrenia group versus controls [18]. These observations lead the researchers to study the entire SSRT distribution (Figure 2 (path 2-1,2-2)).
Referring to Figure 2 (path 2-1), there are two main methods to estimate SSRT as a single random variable: Colonius’s nonparametric method [19] and the Bayesian parametric method [20,21]. The first method retrieves the cumulative distribution function of SSRT given several components as follows: (i) go reaction times GORT in go trials with density f G O R T , (ii) signal respond reaction times SRRT in the failed stop trials with density f S R R T , (iii) n stop signal delays T d , and (iv) probability of successful inhibition (SI). The cumulative distribution function is calculated as in Equation (5) [19]. Although the first method theoretically gives the entire nonparametric distribution of SSRT, it cannot be implemented for empirical data in practice. It requires an unrealistically high number of trials for accurate estimations [20,21]. In the case of such estimations for simulated data, it has underestimated the mean of SSRT and overestimated the variance of SSRT [4,22]. These observations led researchers to propose the second method of estimation of SSRT in the Bayesian context under given parametric distributional assumptions for the involved GORT, SRRT and SSRT in the SST data [20]. The Bayesian Parametric Approach (BPA) presents a novel parametric approach to estimate the entire distribution of SSRT, which applies to real data with a low trial number [21]. Depending on the individual or hierarchical data, the BPA estimates parameters of the SSRT distribution distinctively. The estimation is done separately for each participant (called individual BPA or IBPA) or is done successively for each participant, and then the entire population (called hierarchical BPA or HBPA) [23,24]. Several studies have used the BPA approach in estimating SSRT distribution parameters for the case of Ex-Gaussian (ExG) distribution assumption with θ = ( μ , σ , τ ) . For example, it has been shown that more practice in stop trials corresponds to lower estimated μ and higher estimated τ , for the SSRT ExG distribution [25]. Next, the BPA approach has shown that tyrosine consumption corresponds with lower estimated μ for the SSRT distribution [26]. Finally, the mixture BPA approach has been used to show the existence of trigger failures (Trigger Failure (TF) refers to the situation in which the participant fails to correctly diagnose and interpret the stop signal leading to his inability to attempt to inhibit the ongoing go process [27]). on stop signal performance in healthy control participants in two studies of inhibition deficiency in schizophrenia [28]. Assuming that the distribution of GORT and SSRT follows a parametric form, such as Ex-Gaussian (ExG) with parameter θ = ( μ , σ , τ ) , the BPA estimates the posterior distributions π ( μ s t o p | d a t a ) , π ( σ s t o p | d a t a ) , and π ( τ s t o p | d a t a ) . Then, the cumulative distribution function is calculated as in Equations (6) and (7) [21]:
F S S R T ( t ) = 1 ( 1 P ( S I | T d ) ) × ( f S R R T ( t + T d | T d ) f G O R T ( t + T d ) ) , 0 < t , T d < ,
F S S R T ( t ) = F E x G ( t | θ s t o p = ( μ s t o p , σ s t o p , τ s t o p ) ) , 0 < t < , μ s t o p = E ( π ( μ s t o p | d a t a ) ) , σ s t o p = E ( π ( σ s t o p | d a t a ) ) ,
τ s t o p = E ( π ( τ s t o p | d a t a ) ) .

1.3. SSRT Estimation and Aftereffects of Inhibition: Constant vs. Distribution

1.3.1. The Assumption

However, as mentioned by Logan [4], there is little known about the inhibition’s aftereffects and the type of questions of interest. One related unanswered question is whether there exist any aftereffects of the non-inhibited (e.g., go) trials and inhibited (e.g., stop) trials on inhibition and, in case of affirmative answer, how to measure SSRT as a constant or as a random variable. Here, in both the nonparametric and Bayesian parametric methods mentioned above, there is an implicit assumption. The assumption is about the aftereffects of go trials and stop trials in SST data; that is, the impact of the preceding trial type, either go or stop, on the current stop trial SSRT is assumed to be the same. Most of the SST literature has taken this assumption for granted. To the best of the authors’ knowledge, few studies have dealt with this question and estimated the SSRT distribution when this assumption is relaxed. Some studies have shown that after a go trial, the participants have a lower go reaction time GORT versus after the stop trial [29]. This phenomenon implies that the GORT distribution after each type of trial (go/stop) will differ, impacting the participant’s ability to stop after each trial type [30].

1.3.2. Constant Index

There are only two studies in the SST literature that partially answered this question when SSRT is considered as constant index [14,15]. Here, it was shown when considering SST data in a longitudinal context S S R T W e i g h t e d c > S S R T L o g a n 1994 c ; and when considering SST data in a missing time series context S S R T ( S S . L o g a n 1994 ) c > S S R T L o g a n 1994 c . Both studies’ results were valid for the empirical SST data and the simulated SST data.

1.3.3. Motivation

Given that constant SSRT index can be considered as a degenerate random variable, the above results partially shed light on the proposed question for the case of a non-degenerate SSRT random variable. However, it is still unknown whether the constant index related results hold for general SSRT random variable, in which order context these comparisons over random variables can be conducted and in which mechanism the pairwise comparisons of the involved paired sets of random variables is conducted.

1.4. Study Outline

This study offers an estimation of the SSRT distribution given the relaxed assumption of equal impact of the preceding trial type (go/stop) on the current stop trial SSRT distribution. It uses the notion of two-state mixtures [31] and proposes parametric mixture Bayesian modelling on the entire SST data set (Figure 2 (path 2-2)). The study’s outline is as follows: First, as in [15] for each participant, the overall empirical SST data is partitioned into type-A cluster SST data and type-B cluster SST data. Using the IBPA method, the fitted SSRT ex-Gaussian parameters are calculated for the cluster type SSRT distributions and the single SSRT distribution. The study’s empirical data provide an example of the violated assumption. Second, a mixture SSRT random variable is introduced as a natural generalisation of two cases: (i) its constant index S S R T W e i g h t e d c counterpart in Equation (3) and (ii) its Bayesian parametric form under the ex-Gaussian distributional assumption. Then, considering the mean of posterior parameters as their point estimations, the key descriptive and shape statistics of the mixture SSRT ( S S R T M i x t u r e ) are compared with those of type-A SSRT ( S S R T A ) , type-B SSRT ( S S R T B ) and the single SSRT ( S S R T S i n g l e ) . Third, we compare the involved pairs of distributions in usual stochastic order ( < s t ) at the individual and population level. The population-level comparisons use our proposed Two-Stage Bayesian Parametric Approach (TSBPA) and our proposed Paired Samples Parametric Distribution Test (PSPDT). Finally, the earlier comparisons are repeated and discussed in terms of the involved weights in the definition of proposed mixture SSRT ( S S R T M i x t u r e ) .

2. Materials and Methods

2.1. The Data and Study Design

This study’s data and design are previously described in [32]. The study included 16,099 participants aged 6 to 19 years old and was conducted at the Ontario Science Centre in Toronto, Canada, between June 2009 and September 2010. Each participant sat in front of a computer screen with a game pad device equipped with two buttons (X/O) in their hands. The trials were either go or stop. Every go trial began with a 500 ms fixation point followed by a stimulus: An O or X presented for 1000 ms in the centre of a computer screen. The participants were instructed to press the correct button as fast as possible and the computer program would record their reaction times. Every stop trial began as the go trial with one extra feature: With an initial stop signal delay T d of 250 ms after the go stimulus, each stop trial included an audio stop signal cue (i.e., saying “Stop !”) presented through headphones to the participant in the context of the tracking method. The participants were supposed not to press the button (X/O) on the game pad. In the case of failed inhibition, the computer program would record the participants’ signal respond reaction times (SRRT). The entire SST dataset of the trials (go/stop) was recorded in a longitudinal form (see Appendix A). In this study, each participant completed four blocks of 24 trials with a random 25% stop signal trials in each block. There were 96 trials in total (24 stop signals and 72 go trials).

2.2. The Sample and Variables

2.2.1. Cluster Type SST Data

In this study, four types of SST data clusters were identified as shown in Table 1 [15]:
1
Type-A SST data cluster: all trial preceded by go trials (See Appendix A)
2
Type-B SST data cluster: all trials preceded by stop trials (See Appendix A)
3
Type-S Single SST data cluster: all trials when considered for one single SSRT distribution
4
Type-M Mixture SST data cluster: all trials when considered for the mixture SSRT distribution.
A random sample of 44 participants was selected for further analysis. The entire stop signal task data for each participant was partitioned to type-A and type-B cluster types (see Appendix A). These participants each had a minimum of 10 type-B stop trials. For each participant, the above four types of SST data clusters were considered. Using IBPA, the corresponding ex-Gaussian SSRTs’ parameters θ = ( μ , σ , τ ) for type-A, type-B and type-S clusters were calculated as the means of posterior distribution estimation of the parameter in Equation (7) (see Appendix B).

2.2.2. Ex-Gaussian Random Variable

Heathcote (1996) [33] formulated the ex-Gaussian (ExG) distribution with parameters ( μ , σ , τ ) with density given by
f E x G ( t | μ , σ , τ ) = 1 τ e x p ( μ t τ + σ 2 2 τ 2 ) × Φ ( μ t σ σ τ ) : σ , τ > 0 , < t <
where Φ is the standard normal cumulative distribution function. The first four non-central moments are given by
E ( E x G ) = μ + τ , E ( E x G 2 ) = μ 2 + 2 μ τ + σ 2 + 2 τ 2 , E ( E x G 3 ) = μ 3 + 3 μ σ 2 + 6 μ τ 2 + 3 μ 2 τ + 3 σ 2 τ + 6 τ 3 , E ( E x G 4 ) = μ 4 + 4 μ 3 τ + 6 μ 2 σ 2 + 12 μ 2 τ 2 + 24 μ τ 3 + 12 μ σ 2 τ + 3 σ 4 + 12 σ 2 τ 2 + 24 τ 4 .
Finally, this random variable is right-skewed and leptokurtic with the following variance, skewness and kurtosis shape statistics:
V a r ( E x G ) = σ 2 + τ 2 γ E x G = 2 ( 1 + σ 2 τ 2 ) 3 2 κ E x G = 3 1 + 2 σ 2 τ 2 + 3 σ 4 τ 4 ( 1 + σ 2 τ 2 ) 2 .

2.2.3. Mixture SSRT Random Variable

Given single SSRT by S S R T S , type-A SSRT by S S R T A , type-B SSRT by S S R T B and W A B e r n o u l l i ( W A c ) where the type A trial type weight W A c is given by W A c = # Type A Stop / # Total Stop , W B c = 1 W A c , the Single SSRT and Mixture SSRT random variables were defined as follows (Note that with notation SSRT for random variable SSRT and S S R T c for constant SSRT estimated with frequentist methods, we have E ( S S R T ) = S S R T c . Consequently, definitions in Equation (11) are natural generalisations of constant SSRT estimations with frequentist methods [15] to general non-constant random variables. Here onward, W A given the context is either a Bernoulli random variable or a constant number W A c defined as above.):
S S R T S i n g l e = d S S R T S , S S R T M i x t u r e = d W A × S S R T A + W B × S S R T B .
In the Bayesian context and using IBPA and under Ex-Gaussian parametric assumption, we have S S R T S E x G ( θ S = ( μ S , σ S , τ S ) ) , S S R T A E x G ( θ A = ( μ A , σ A , τ A ) ) and S S R T B E x G ( θ B = ( μ B , σ B , τ B ) ) , where the parameter point estimations are the means of the associated posterior distributions in IBPA. The Bayesian Mixture Ex-Gaussian SSRT model can be formulated as follows. The priors in the IBPA have uninformative uniform distribution and their own chosen parameters ( α , β ) are based on the positive ranges of parameters ( μ , σ , τ ) of the associated ExG distribution. Figure 3 presents the model using plate notation. Here, we have the following:
  • K = 2 : Number of cluster types,
  • N = 96 : Number of trials in SST data,
  • θ i = ( μ i , σ i , τ i ) : Parameters of Ex-Gaussian SSRT distribution of the ith cluster ( i = 1 : A ; i = 2 : B ) ,
  • μ i U [ α 1 , β 1 ] , ( i = 1 : A ; i = 2 : B ) : Here: α 1 = 10 , β 1 = 2000 ,
  • σ i U [ α 2 , β 2 ] , ( i = 1 : A ; i = 2 : B ) : Here: α 2 = 10 , β 2 = 2000 ,
  • τ i U [ α 3 , β 3 ] , ( i = 1 : A ; i = 2 : B ) : Here: α 3 = 10 , β 3 = 2000 ,
  • ϕ = ( ϕ 1 , ϕ 2 ) : Prior Probability of clusters ( ϕ 1 = W A , ϕ 2 = W B ) ,
  • z i B e r n o u l l i ( W ) : W = W A ,
  • x i : ith SST trial,
  • x i | s t o p E x G ( μ z i , σ z i , τ z i ) .
The first four moments of the Mixture SSRT are as follows:
E ( S S R T M i x t u r e k ) = W A E ( S S R T A k ) + W B E ( S S R T B k ) : 1 k 4 .
Consequently, the variance, the skewness and the kurtosis of the Mixture SSRT are computed by
V a r ( S S R T M i x t u r e ) = W A E ( S S R T A 2 ) + ( 1 W A ) E ( S S R T B 2 ) ( W A E ( S S R T A ) + ( 1 W A ) E ( S S R T B ) ) 2 , γ S S R T M i x t u r e = 1 V a r 3 2 ( S S R T M i x t u r e ) ( E ( S S R T M i x t u r e 3 ) 3 E ( S S R T M i x t u r e ) E ( S S R T M i x t u r e 2 ) + 2 E 3 ( S S R T M i x t u r e ) ) , κ S S R T M i x t u r e = 1 V a r 2 ( S S R T M i x t u r e ) ( E ( S S R T M i x t u r e 4 ) 4 E ( S S R T M i x t u r e ) E ( S S R T M i x t u r e 3 ) + 6 E 2 ( S S R T M i x t u r e ) E ( S S R T M i x t u r e 2 ) 3 E 4 ( S S R T M i x t u r e ) ) .
Remark 1.
Using new Equation (11) for SSRT, Colonious’s proposed nonparametric method for retrieving the entire SSRT CDF for given type-A weight W A , type A delay T d A , type-A signal respond density f S R R T A , type-A GORT density f G O R T A , type-A probability of successful inhibition P ( S I | T d A ) and the corresponding type B information yields the following mixture form:
F S S R T ( t ) = 1 W A ( 1 P ( S I | T d A ) ) × ( f S R R T ( t + T d A | T d A ) f G O R T ( t + T d A ) ) W B ( 1 P ( S I | T d B ) ) × ( f S R R T ( t + T d B | T d B ) f G O R T ( t + T d B ) ) , 0 < t , T d A , T d B < .
Remark 2.
The mixture modelling for SSRT proposed here can be applied with other non-Ex-Gaussian parametric RT distributions such as Ex-Wald, Wald, [34] Gamma, Weibull and Lognormal [35,36] with the required modifications in estimations.

2.3. Statistical Analysis

For each participant IBPA under Ex-Gaussian parametric distribution was run three times: one for its associated cluster type-A, cluster type-B and single type-S SST data (a total of 132 times). We then calculated the mean posterior estimates of θ S = ( μ S , σ S , τ S ) , θ A = ( μ A , σ A , τ A ) , and θ B = ( μ B , σ B , τ B ) . Then, the parameters, the descriptive statistics and the shape statistics for type-A SSRT ( S S R T A ) , type-B SSRT ( S S R T B ) , type-S single SSRT ( S S R T S i n g l e ) and type-M Mixture SSRT ( S S R T M i x t u r e ) were calculated. The next steps of the analysis depended to the context and procedure described in the following.

2.3.1. Comparisons Context: Real Numbers and Random Variables

Two sets of comparisons were conducted: (i) within a real numbers contexts and (ii) within a real-valued random variables context. For the first set of comparisons, paired t-test (PROC TTEST, ‘SAS/STAT’ software version 9.4 [37]) were conducted. These comparisons were made for the Ex-Gaussian distribution’s fitted parameters, the descriptive summary statistics and the shape statistics in the usual real numbers order ( < ) across cluster types. For the second set of comparisons, the two samples Kolmogorov–Smirnov (KS) tests (ks.test package stats, ‘R’ software version R.3.4.3 [38]) were conducted. These tests were conducted under the assumption of 96 points for the involved random variables CDFs to compare the SSRT random variables in usual stochastic order ( < s t ) across cluster types. Such test at the individual is
H 0 : S S R T S i n g l e ( θ S ) = s t S S R T M i x t u r e ( θ M ) , H 1 : S S R T S i n g l e ( θ S ) s t S S R T M i x t u r e . ( θ M )

2.3.2. Comparisons Procedure: Random Variables

Given two sets of stop signal reaction times distributions { S S R T S i n g l e ( θ S k ) } k = 1 44 and { S S R T M i x t u r e ( θ M k ) } k = 1 44 , our problem of interest was an overall comparison between these two groups of distributions in usual stochastic order < s t [39]. Our proposed problem was dealt with in two steps as follows:
Step (1): Two-Stage Bayesian Parametric Approach (TSBPA)
This proposed analysis is neither completely hierarchical Bayesian analysis nor completely conventional meta-analysis. It has components of both methods. On the one hand, it has two separates one-stage Bayesian analyses. On the other hand, it calculates overall population-level estimates in the second analysis with consideration of non-zero correlations. Referring to Equation (11), we define overall SSRT distributions per single S cluster type and mixture M cluster type as the following:
S S R T O . S i n g l e ( θ S ) = S S R T S i n g l e ( θ S ¯ ) , S S R T O . M i x t u r e ( θ M ) = S S R T M i x t u r e ( θ M ¯ ) .
where θ S = θ S ¯ = θ T ¯ = ( μ T ¯ , σ T ¯ , τ T ¯ ) and θ M = θ M ¯ = ( W A ¯ , θ A ¯ , θ B ¯ ) with W A ¯ = k = 1 44 W A k / 44 and θ A ¯ = ( μ A ¯ , σ A ¯ , τ A ¯ ) , θ B ¯ = ( μ B ¯ , σ B ¯ , τ B ¯ ) being computed by a Two-Stage Bayesian Parametric Approach (TSBPA) method described as follows.
In the TSBPA (See Figure 4), the data, the priors and the posterior estimations are considered as below [40,41,42]. We conduct the first stage with 3 chains, 5000 burn in out of 20,000 simulations in BEESTS 2.0 software. Then, we consider the mean of posterior estimates μ s t o p , σ s t o p , τ s t o p as their point estimates E ( μ s t o p | x ) μ s t o p , E ( σ s t o p | x ) σ s t o p , E ( τ s t o p | x ) τ s t o p in the second stage of meta-analysis. We conduct this stage with 3 chains with 5000 burn in out of 100,000 simulations in WINBUGS1.4 software [43]. Finally, we consider the mean of posterior estimates μ μ s t o p , μ σ s t o p , μ τ s t o p in the second stage as estimates of θ S = θ S ¯ = θ T ¯ = ( μ T ¯ , σ T ¯ , τ T ¯ ) , respectively, for the case of overall data S. We repeat this process for the case of type A SST data and type B SST data for estimation of θ A ¯ = ( μ A ¯ , σ A ¯ , τ A ¯ ) , θ B ¯ = ( μ B ¯ , σ B ¯ , τ B ¯ ) , respectively.
Stage (1)
DataIndividual Priors
G O R T E x G ( μ g o , σ g o , τ g o )
S R R T E x G ( μ g o , σ g o , τ g o , μ s t o p , σ s t o p , τ s t o p , S S D ) I [ 1 , 1000 ] +     μ g o , σ g o , τ g o U [ 10 , 2000 ]
S S R T E x G ( μ g o , σ g o , τ g o , μ s t o p , σ s t o p , τ s t o p , S S D ) I [ 1 , 1000 ] + μ s t o p , σ s t o p , τ s t o p U [ 10 , 2000 ]
Stage (2)
DataPriors
( μ s t o p , σ s t o p , τ s t o p ) M V N ( M 3 × 1 , 3 × 3 )    ρ μ , σ , ρ μ , τ , ρ σ , τ U [ 0.99 , + 0.99 ]
μ s t o p N ( μ μ s t o p , σ μ s t o p 2 ) μ μ s t o p , β 20 , β 30 N ( 0 , 1000 )
σ s t o p | μ s t o p N ( μ σ s t o p , σ σ s t o p 2 ) σ μ s t o p , σ σ s t o p , σ τ s t o p N ( 0 , 10 ) I [ 0 , 1000 ] +
τ s t o p | ( μ s t o p , σ s t o p ) N ( μ τ s t o p , σ τ s t o p 2 )
μ σ s t o p i = β 20 + β 21 . μ s t o p i
μ τ s t o p i = β 30 + β 31 . μ s t o p i + β 32 . σ s t o p i
Step (2): Paired Samples Parametric Distribution Test (PSPDT)
This proposed test can be considered as a distributional counterpart of the paired z-test in the real numbers. Using overall estimates in Step (1), we then conduct the following paired samples parametric distribution test hypothesis testing for K = 44 at the 5% significance level:
H 0 : S S R T O . S i n g l e ( θ S ) = s t S S R T O . M i x t u r e ( θ M ) , H 1 : S S R T O . S i n g l e ( θ S ) < s t S S R T O . M i x t u r e ( θ M ) .
where the Two-Sample Kolmogorov–Smirnov Statistics D ( n , m k ) for the kth ( 1 k K ) comparisons of the simulated distributions in (17), the following average two-samples KS statistics were considered as the test statistics for the comparison of distributions in the test of (17):
D n , m ¯ = 1 K k = 1 K D n , m k
We reject the null hypothesis H 0 in favour of alternative hypothesis H 1 at given α -level (e.g., 0.05) whenever
D n , m ¯ > c ( α ) 1 m + 1 n : c ( α ) = 1 2 l n ( 1 2 ) , α = 0.05 , n = m = 96 .
The Two-Sample K–S test analysis was conducted with R3.4.3 software as before. The hypothesis testing in (17) were repeated for other comparisons between cluster type SSRT indices including S S R T A vs. S S R T S i n g l e , S S R T B vs. S S R T S i n g l e and S S R T B vs. S S R T A .
Remark 3.
The test (17) with < s t replaced by s t for the degenerate case of K = 1 reduces to the usual two samples K-S test at the individual level (15).

3. Results

The results are divided into three subsections. In Section 3.1, we calculated the posterior mean ex-Gaussian parameter estimations of cluster type-A, cluster type-B, single and mixture SSRT distribution. Then, using them we compared the descriptive and shape statistics, including skewness and kurtosis across cluster type indices. Next, in Section 3.2, we compared single SSRT and mixture SSRT distributions in stochastic order at two levels: (i) the individual level and (ii) the population level. For the individual level, we applied IBPA, and for the population level, we used TSBPA. Finally, in Section 3.3, we compare the comparison results for the descriptive statistics and the entire SSRT distribution in terms of the cluster weights ( W A ).

3.1. Descriptive and Shape Statistics

This section includes two sets of descriptive results: First, the results for cluster-type related mean and standard deviation of the Ex-Gaussian SSRT. Second, the results for cluster-type-related shape statistics skewness and kurtosis of the involved random variables. Throughout these results, as it is shown in Figure 4, the parameters ( μ , σ , τ ) refer to the mean posterior estimates of the random variables ( μ , σ , τ ) in the first stage of TSBPA, respectively (see Appendix B). The descriptive and shape statistics were calculated using these quantities and Equations (9) and (10).
Table 2 presents the descriptive results for the type-A, type-B, single and mixture fitted SSRT Ex-Gaussian random variable using IBPA (See Appendix B for three pramaeter estimates across three clusters). As it is shown, there is no significant difference between mean and standard deviation between cluster type SSRTs(type-B vs. type-A). However, the mentioned list of both cluster types of SSRTs is significantly larger than the single SSRT. Therefore, we conclude at this stage that the mean of mixture SSRT is significantly larger than the one of single SSRT. This result is consistent with the frequentist approach [15]. However, it is observed that the variance has significantly increased, and consequently, the precision has significantly decreased. We remind the reader that there are two evidences for violation of the assumption of equal impact of the preceding trial type (go/stop) on the current stop trial SSRT: First, despite the non-significant results presented in Table 2 (Panel (b): Type B vs. Type A) the mean type-B SSRT has a non-identity linear relationship with mean type-A SSRT ( m e a n . S S R T B i = β 0 + β 1 . m e a n . S S R T A i + ϵ i : ϵ i N ( 0 , σ e 2 ) , β 0 = 96.2 , ( 95 % C I = ( 4.0 , 188.4 ) ) ; β 1 = 0.53 ( 95 % C I = ( 0.06 , 1.0 ) ) ). Otherwise, such a relationship must be identity linear (i.e., β 0 = 0 , β 1 = 1 ). Second, the mean and standard deviation of type-A SSRT and type-B SSRT are significantly different from those of single SSRT. Otherwise, all these descriptive statistics would have been equal across type-A, type-B and type-S single SST clusters.
Figure 5 shows the difference between skewness and kurtosis of fitted IBPA Ex-Gaussian SSRT random variables by cluster type. As shown in Figure 5a, while each of Mixture SSRT components has smaller or equal skewness versus the Single SSRT, upon combination into Mixture SSRT, the resultant Mixture SSRT has significantly larger skewness compared to the Single SSRT. Similar results hold for the case of kurtosis as shown in Figure 5b.
Given summary statistics and shape statistics comparison results between single SSRT and mixture SSRT, one naturally considers comparing their associated distributions. In the next section, we deal with this topic.

3.2. Bayesian Mixture SSRT Estimation and Comparisons

This section deals with individual and overall level estimations of Single SSRT and Mixture SSRT and their usual stochastic order comparisons.
Table 3 presents the results of the two-sample KS hypothesis test at the individual level given by (15) by direction and p-values for the sample of 44 subjects based on IBPA. Similar hypothesis testing is conducted replacing ≠ with < and > in an alternative test. With two participants exception (case 34 case 37), the result shows that controlling for Family-Wise Error Rate(FWER) with Bonferroni’s correction (p-value = 0.05/3 = 0.0166) the single SSRT is smaller than the mixture SSRT in stochastic order. This result is consistent with the direction of constant index SSRT results [15].
We test the hypothesis (17) from TSBPA given uninformative priors for an overall conclusion using a paired samples parametric distribution test. The choice of TSBPA rather than HBPA was out of consideration for pairwise non-zero correlations in the second stage of the analysis. One key missing characteristic in the HBPA is the relaxing assumption of zero correlation of mean posterior parameters at the individual level. This assumption is violated given cluster-S SSRT mean posterior parameters Pearson correlations ρ μ σ = 0.20 , ρ μ τ = 0.64 , ρ σ τ = 0.66 ; cluster-A SSRT mean posterior parameters Pearson correlations ρ μ σ = 0.52 , ρ μ τ = 0.81 , ρ σ τ = 0.74 ; and, cluster-B SSRT mean posterior parameters Pearson correlations ρ μ σ = 0.69 , ρ μ τ = 0.95 , ρ σ τ = 0.80 . Table 4 presents the results of the paired samples parametric distribution test using TSBPA:
As we observe from Table 4, the results are conclusive. The single SSRT is (provisionally) smaller than cluster type-A SSRT, cluster type-B SSRT (p-value < 0.0562) and Mixture SSRT. Furthermore, given consideration of mean of SSRT distribution as its point index estimation, the result regarding the comparison of single SSRT versus Mixture SSRT is consistent with the direction of the frequentist results as
S S R T S i n g l e c = E ( S S R T S i n g l e ) = 151.5 < 195.2 = E ( S S R T M i x t u r e ) = S S R T W e i g h t e d c .
Figure 6 shows the plot of the overall density and cumulative distribution function of cluster type SSRTs with overall TSBPA parameter estimates given in Table 4. As it is observed in Figure 6b, while there is no such distinction between cumulative distributions of cluster type-A SSRT, cluster type-B SSRT, and Single SSRT, the cumulative distribution of single SSRT is clearly on the left side of that of Mixture SSRT.
In this and the previous section, we considered the cluster type weight ( W A ) in its fixed individual values. In the next section, we study its role in the comparison results as a critical variable on its own.

3.3. The Role of Cluster Type Weights in the Comparisons

This section compares the descriptive statistics of mean, variance and the entire distribution of SSRT indices in terms of individual optimal weights. By definition, the optimal weight W A is the most natural weight given the independence of assignment of stop or go process to the given trial [14]. The following proposition determines the values of the optimal weight [14]:
Proposition 1.
The weight W A = 0.75 ( W B = 0.25 ) is the optimal weight given independence of assignment of stop or go process to the given trial in the tracking SST data with proportion of 25% of stop trials.
Note that the fitted ExG parameters θ = ( μ , σ , τ ) in each cluster type SST data are independent of the weights W A . This result is because the fitted ExG parameters for the SSRT are independent of the stop trials’ proportion. Thus, from the weight W A (as the result of the equality in Proposition 1). Given this result, we discuss the impact of cluster type weights on average disparities of mean SSRT estimates and the variance SSRT estimates as follows.
First, to study the impact of individual weights on the disparities of the mean estimations across indices, we consider average differences of the new index S S R T M i x t u r e mean versus the established index S S R T S i n g l e mean in terms of the individual weights ( W A ) . The averages of the ExG parameters are taken over entire n = 44 participants. Considering W A as the main variable, it follows that
Δ E ( S S R T ) ¯ ( W A ) = E ( S S R T M i x t u r e ) ¯ E ( S S R T S i n g l e ) ¯ = E ( W A · S S R T A + ( 1 W A ) · S S R T B ) ¯ E ( S S R T S i n g l e ) ¯ = W A · E ( S S R T A ) ¯ + ( 1 W A ) · E ( S S R T B ) ¯ E ( S S R T S i n g l e ) ¯ = ( E ( S S R T A ) ¯ E ( S S R T B ) ¯ ) · W A + ( E ( S S R T B ) ¯ E ( S S R T S i n g l e ) ¯ = ( ( μ A ¯ + τ A ¯ ) ( μ B ¯ + τ B ¯ ) ) · W A + ( ( μ B ¯ + τ B ¯ ) ( μ S ¯ + τ S ¯ ) ) = 11.4 W A + 56.8 , ( 0 W A 1 ) .
Figure 7a presents the average disparities of mean mixture SSRT and mean single SSRT versus individual weights W A for the extrapolated range of [ 0 , 1 ] . As shown, the average difference between two index means is linear in terms of the individual weight W A with the minimum value of 56.8 ms (for minimum sample weight of 0.00) and maximum value of 68.2 ms (for maximum sample weight of 1.00). Furthermore, their corresponding averaged disparities equals 63.5 ms (at the overall sample weight of 0.59). Finally, the two index means’ disparities are maximised to 65.3 ms using the optimal weight of 0.75.
Second, to examine the impact of individual weights on the disparities of the variance estimations across indices, similar to the case in Section 3.2, we consider average differences of the new index S S R T M i x t u r e variance versus the established index S S R T S i n g l e variance in terms of the individual weights ( W A ) . The averages of the quadratic ExG parameters are taken over entire n = 44 participants. Considering W A as the primary variable, it follows that
Δ V a r ( S S R T ) ¯ ( W A ) = V a r ( S S R T M i x t u r e ) ¯ V a r ( S S R T S i n g l e ) ¯ = V a r ( W A · S S R T A + ( 1 W A ) · S S R T B ) ¯ V a r ( S S R T S i n g l e ) ¯ = ( E ( S S R T A ) E ( S S R T B ) ) 2 ¯ · W A 2 + ( ( E ( S S R T A ) E ( S S R T B ) ) 2 ¯ + ( V a r ( S S R T A ) V a r ( S S R T B ) ) ¯ ) · W A + V a r ( S S R T B ) V a r ( S S R T S i n g l e ) ¯ = ( μ A + τ A μ B τ B ) 2 ¯ · W A 2 + ( ( μ A + τ A μ B τ B ) 2 ¯ + ( σ A 2 + τ A 2 σ B 2 τ B 2 ) ¯ ) · W A σ B 2 + τ B 2 σ S 2 τ S 2 ¯ = 18885.9 W A 2 + 21106.8 W A + 20330.3 , ( 0 W A 1 ) .
In particular, the average variance differences attains its maximum value at
W A = ( μ A + τ A μ B τ B ) 2 ¯ + ( σ A 2 + τ A 2 σ B 2 τ B 2 ) ¯ 2 ( μ A + τ A μ B τ B ) 2 ¯ 0.56 .
Figure 7b presents the average disparities of mixture SSRT variance and single SSRT variance versus individual weights W A for the extrapolated range of [ 0 , 1 ] . As shown, the average difference between two indices variances follows a quadratic increasing–decreasing pattern in terms of the weights W A with maximum values attained closed to W A 0.56 . Next, the disparities for the optimal weight W A = 0.75 is smaller than that of population weight W A = 0.59 . However, across all weights spectrum, the average SSRT variance differences are positive, showing that the new mixture SSRT index has higher variance than the current single SSRT index. Consequently, its precision is smaller.
Finally, to explore the impact of cluster type weights ( W A ) on the overall SSRT distributions comparison results for the hypothesis testing (17), we considered the averaged two-sample KS test statistics S as a function S of weights S = S ( W A ) and calculated the corresponding p-values. Figure 8 presents the results in terms of the weights. As shown in Figure 8b, for almost all ranges of the weights W A , the single SSRT is significantly smaller than the mixture SSRT in stochastic order. Next, the disparity is the weakest when W A = 0 with the corresponding p-value = 0.0562, and it is the strongest when W A = 1 with the corresponding p-value = 0.0152. Finally, the disparity at the optimal weight W A = 0.75 is more potent than that of population weight W A = 0.59 with corresponding p-values of 0.0262 and 0.0312, respectively.

4. Discussion

4.1. Present Work

This study presented a mixture Bayesian parametric approach for a more illuminating SSRT distribution estimation by considering two subtype SST cluster information suggesting a new estimation of the SSRT distribution. Furthermore, it introduced two novel statistical methodologies accompanied by their empirical applications: TSBPA and PSPDT. It was hypothesised that considering cluster type information in the new mixture SSRT distribution calculations would impact the estimation of SSRT distribution. This yields to a distributional counterpart to the case of constant index SSRT [14,15].
The results confirmed the hypothesis through three observations:
  • The descriptive and shape statistics
  • The distributional comparisons at the individual level and the population level
  • With the validity of the results in the first two observations across the entire spectrum of the weights
Similar to the constant index SSRT [15], in most cases, the mixture SSRT is different from the single SSRT in shape statistics and the stochastic order. However, in two special distinct cases, they are the same: (i) type A cluster SST is empty ( W A = 0 ) and (ii) type B cluster SST is empty ( W A = 1 ) .
This study confirmed that SSRT depends on non-horse race-related factors in each round of SST experimental trial, such as memory aftereffects and proportion of cluster type stop trials. It has shed light on the preparation aspect of choice stop signal reaction times by treating the previous trial type’s aftereffects as memory in the two-state mixture model [31]. Besides, given that skewness of the RT distributions increases with memory involvement (versus a perceptual decision) [44], the increase in reported skewness in the mixture SSRT versus single SSRT confirms that the proposed mixture model successfully captures the memory involvement in the decision process [44]. Furthermore, as in the context of the horse race independent model, an increase in kurtosis of SSRT is proportional to more extreme values of the right tail of SSRT distribution. Therefore, this causes a higher probability of failed inhibition in the stop trials(and vice versa). Next, the increase in reported kurtosis in the mixture SSRT versus single SSRT gives evidence that the proposed mixture model optimally uses the information given by pre-pushed failed inhibitions in the stop trials in the estimation of SSRT distribution.
This study’s findings for the SSRT distribution were consistent with the constant index SSRT when considering the impact of sub-cluster types in the estimations [14,15]. In detail, there were consistent results between the usual comparison of the single SSRT and weighted SSRT (as constant indices) and the stochastic comparison of the single SSRT and mixture SSRT (as non-constant random variables). Indeed, we found that
S S R T S i n g l e c < S S R T W e i g h t e d c ,
S S R T S i n g l e < s t S S R T M i x t u r e .
On the one hand, if we look at the two sides of the Equation (22) as degenerate random variables, we are led to Equation (23). On the other hand, if we take expectations from both sides of Equation (23), we are led to Equation (22).
This study’s novel statistical methodological contributions involved the Two-Stage Bayesian Parametric Approach (TSBPA) and the Paired Samples Parametric Distribution Test (PSPDT). TSBPA’s advantage was that it considers the underlying non-zero correlation between estimated mean posterior parameters at the first stage in the second stage’s final calculations. This feature is neglected in HBPA. PSPDT offered a novel method to compare paired sets of parametric random variables using the two-samples KS test. An application of both proposed methods was provided in this study.
There are limitations in the current study. First, the sample size was relatively small ( n = 44 ) . To show more precise comparisons, larger sample size is needed. Second, the TSBPA assumes a multivariate normal distribution form for the mean posterior parameters at the second stage, which may not hold. Third, in TSBPA, when comparing overall Mixture SSRT and overall Single SSRT, there is no specific restriction on the simulation sample sizes in Equation (18). Here, while we set the sample sizes to n = m = 96 (the SST data trials size), there could be other choices. Fourth, the two-sample Kolmogorov–Smirnov test has low sensitivity in the tail of the distributions when comparing them. One may consider other metrics for comparison purposes [45]. Finally, given the structure of the equations for the shape statistics (skewness and kurtosis) in terms of the cluster weights ( W A ) , unlike the descriptive statistics in Section 3.3, there was no simple closed form for the averaged differences of the new index S S R T M i x t u r e skewness (or kurtosis) versus the established index S S R T S i n g l e skewness (or kurtosis) in terms of the individual weights ( W A ) . Similar to the descriptive statistics, the existence of such a simple closed formula would shed more light on the average disparities of skewness and kurtosis of the two indices across a spectrum of the individual weights.

4.2. Future Work

The proposed approach in modelling the SSRT distribution in this study should be replicated in future research in several different directions. This further work may shed light on further unknown corners. New work includes (i) considering the larger number of SST trials, (ii) examining the order of trials, (iii) expanding these methods to other clinical populations, (iv) considering trigger failures in the modelling, (v) interpreting the shape statistics and (vi) estimating signal respond reaction times (SRRT).
First, research has recommended that reliable estimates of SSRT for adults requires 200 SST trials with 50 stops [16]. Therefore, the current work’s approach needs to be replicated for SST data with 400 trials, including sub-cluster types of 200 trials with 50 stops for confirmation and generalisation purposes.
Second, additional research to this study must address the presumption of equal impact in the order of trials for the same cluster type weights W A . For example, for the case of W A = 1 , one may consider two schemes within the study of 96 SST trials: In the first scheme, trials numbered 2 k ( 1 k 25 ) are stop trials. In the second scheme, trials numbered 98 2 k ( 1 k 25 ) are the stop trials. There is no known study investigating if, in the same participant, these schemes lead to the same S S R T M i x t u r e or not.
Third, after this study, the work should apply the proposed S S R T M i x t u r e to study the inhibitory deficiency in different clinical groups such as ADHD, OCD, autism and schizophrenia. The application is in terms of descriptive statistics, shape statistics and the differential disparities across these clinical groups.
Fourth, there are trigger failures that impact the estimations [27]. Given the probability of trigger failures (TF) of P T ( T F ) , P A ( T F ) and P B ( T F ) for the overall SST data, cluster-A SST data and cluster-B SST data, respectively, there remains an open question on their relationships and the impact of the cluster type trigger failures in the estimations of the S S R T M i x t u r e and on the above results. The results of such consideration generalise this study’s findings in terms of trigger failures and control them in order to eliminate a potential confounding variable, trigger failure status.
Fifth, this study merely reported and compared the shape statistics for skewness and kurtosis across the cluster type SSRTs, single SSRT and the mixture SSRT distributions. There is a need to investigate these shape statistics’ psychiatric and psychopathological interpretations given the ex-Gaussian parametric distribution assumption.
Finally, this study and the earlier study in [15] addressed the estimation of stop signal reaction times (SSRT) in the case of the violated assumption of similar aftereffects of the prior trial type. It is plausible to conduct a counterpart investigation on to the estimation of the signal respond reaction times (SRRT) constant index and distribution.

4.3. Conclusions

There has been a great deal of interest in the aftereffects of inhibition on the estimation of SSRT in the SST literature from the early 1990s. This study addressed the problem in part and presented a two-state mixture model of SSRT distribution by considering the prior trial type with results consistent with the constant SSRT index results in the literature [15]. The results were consistent across constant index and non-constant random variable contexts in terms of the algebraic directions of the comparisons. Moreover, more information was used from the same SST data in the newly proposed mixture estimation method versus the current single estimation method. The vital assumption introduced in this work was relaxed in the newly proposed mixture estimation method. Given these advantages, we recommended considering mixture SSRT distribution ( S S R T M i x t u r e ) as the most informative estimation of the latency of stopping.

Author Contributions

Conceptualisation, M.S. and M.E.; methodology, M.S. and M.E.; software, M.S.; validation, M.E.; formal analysis, M.S.; investigation, M.S.; resources, M.S. and R.S.; data curation, R.S.; writing—original draft preparation, M.S.; writing—review and editing, M.S., A.D. and R.S.; visualisation, M.S. and A.D.; supervision, M.E. and A.D.; project administration, R.S.; funding acquisition, M.E. and R.S. All authors have read and agreed to the published version of the manuscript.

Funding

This work has been funded by University of Toronto’s Queen Elizabeth II (QEII) graduate scholarship in Science and Technology 2017–2018 and, by Canadian Institute of Health Research (CIHR) operating grant (PIs: Russell Schachar: MOP-93696; Paul Arnold: MOP-106573).

Institutional Review Board Statement

Not applicable.

Informed Consent Statement

Informed consent was obtained from all subjects involved in the study.

Data Availability Statement

Not applicable.

Acknowledgments

The authors are grateful to journal reviewers for offering constructive comments and suggestions on the first draft of the manuscript.

Conflicts of Interest

The authors declare no conflict of interest.

Abbreviations

The following abbreviations are used in this manuscript:
ADHDAttention Deficit Hyperactivity Disorder
BEESTSBayesian Ex-Gaussian Estimation of Stop Signal RT distributions
BPABayesian Parametric Approach
ExGEx-Gaussian distribution
FWERFamily-Wise Error Rate
GORTReaction Time in a go trial
GORTAReaction Time in a type A go trial
GORTBReaction Time in a type B go trial
HBPAHierarchical Bayesian Parametric Approach
IBPAIndividual Bayesian Parametric Approach
MCMCMarco Chain Monte Carlo
OCDObsessive Compulsive Disorder
PSPDTPaired Samples Parametric Distribution Test
SSDStop Signal Delay
SRRTReaction Time in a failed stop trial
SRRTAReaction Time in a failed type A stop trial
SRRTBReaction Time in a failed type B stop trial
SSRTStop Signal Reaction Times in a stop trial
SSRTAStop Signal Reaction Times in a type A stop trial
SSRTBStop Signal Reaction Times in a type B stop trial
SSTStop Signal Task
TFTrigger Failure
TSBPATwo-Stage Bayesian Parametric Approach

Appendix A. Sample SST Data and Its Clusters

This section presents a sample SST dataset of 48 trials with 36 go trials and 12 stop trials with initial SSD = 200 ms. The GORT and SRRT have ex-Gaussian distributions (values: −999: missing value; NA: not applicable; 0: failed inhibition; 1: successful inhibition).
BlockTrialGORT (ms)SRRT (ms)SSD (ms)TrialInhibitionCluster
11356.4−999−999GoNAA
12426.5−999−999GoNAA
13−999380350Stop0A
14397.2−999−999GoNAB
15−999−999200Stop1A
16−999−999100Stop1B
17283.6−999−999GoNAB
18457.3−999−999GoNAA
19361.9−999−999GoNAA
110375.7−999−999GoNAA
111478.5−999−999GoNAA
112355.9−999−999GoNAA
113−999−999150Stop1A
114300.5−999−999GoNAB
115347−999−999GoNAA
116390.3−999−999GoNAA
117327.2−999−999GoNAA
118300.4−999−999GoNAA
119382.2−999−999GoNAA
120326.9−999−999GoNAA
121−999389.8200Stop0A
122−999445.4200Stop0B
123352.4−999−999GoNAB
124403.1−999−999GoNAA
21256.4−999−999GoNAA
22426.5−999−999GoNAA
23−999360350Stop0A
24353.2−999−999GoNAB
25−999−999200Stop1A
26−999−999100Stop1B
27253.6−999−999GoNAB
28427.3−999−999GoNAA
29351.9−999−999GoNAA
210355.7−999−999GoNAA
211455.5−999−999GoNAA
212335.9−999−999GoNAA
213−999−999150Stop1A
214321.5−999−999GoNAB
215322−999−999GoNAA
216340.5−999−999GoNAA
217317.2−999−999GoNAA
218303.1−999−999GoNAA
219322.9−999−999GoNAA
220316.5−999−999GoNAA
221−999368.7200Stop0A
222−999435.2200Stop0B
223342.3−999−999GoNAB
224413.5−999−999GoNAA

Appendix B. SSRT ExG Cluster Type Parameter Estimations

This section presents the data of mean posterior ex-Gaussian parameters estimations across trial types by IBPA given by Equation (7) and denoted by E ( μ s t o p | x ) μ s t o p , E ( σ s t o p | x ) σ s t o p , E ( τ s t o p | x ) τ s t o p in Figure 4, (n = 44).
μ Parameter σ Parameter τ Parameter
# μ S μ A μ B σ S σ A σ B τ S τ A τ B
 1  67.899  110.575  74.101  92.015  174.890  128.896  118.238  180.543  96.303 
280.776134.30274.966115.760161.009114.07698.747164.48172.904
3101.21473.414240.51069.94686.953246.68662.30858.302224.543
476.125101.21481.14870.31497.988161.32860.001103.90487.476
5107.774115.981144.308133.990216.231136.901137.250175.537120.983
682.18972.291116.64180.937104.697152.13966.66982.550129.349
791.065102.59598.26298.313187.322160.17361.743107.83196.720
8104.330104.326161.787132.146119.162217.623109.687102.335167.392
965.59579.870102.94890.731166.297139.20954.41892.445102.436
1051.84157.038118.292138.91690.925244.03887.25257.347163.274
1168.697101.93387.97096.996180.128120.07469.633123.46989.641
1246.706104.36858.037163.780185.456139.64659.603140.53462.199
1368.347132.87374.025153.626245.102144.62078.252175.63980.781
1497.39496.609227.966173.632130.787247.703130.17298.451205.539
1582.55972.106129.96577.780126.941142.63067.08182.437139.205
16117.957171.52695.17595.554171.345104.171128.851214.71498.275
1764.79494.75476.374114.202123.549203.17658.881107.58489.813
1887.286193.774120.393155.274209.582184.60596.340200.869122.920
1994.714125.22181.660111.226168.084136.60599.098159.208100.093
2075.24581.478141.65697.756118.291181.230104.026110.761160.693
2171.06295.74764.56458.011118.150173.81752.313105.00985.212
2281.872127.91360.12678.948113.331121.58466.274135.34872.943
23107.98796.020111.41850.664115.317166.39351.215103.610124.598
24101.584209.62787.178171.609218.032183.082131.537222.475103.681
2552.79477.214101.70367.324186.747175.45946.073100.695123.011
2695.81685.851194.075189.521246.825184.251123.096127.805176.595
27117.658153.63493.75762.032131.224163.68162.041145.738105.041
2874.982101.042118.134162.917169.631223.536100.496128.872147.351
2988.30995.600161.360149.086179.344203.212147.284164.919178.930
30110.214112.539114.24762.896123.664159.48659.637119.830122.869
3169.559113.79384.797105.813162.989163.88766.243144.13798.274
3286.656106.062121.578141.479182.938190.266137.950147.733174.887
3391.48698.925138.757153.716194.385186.988136.731153.773160.485
34117.334332.09482.688173.864291.66698.011266.191267.13779.306
35211.322298.325263.992174.198177.075239.405249.031201.246236.296
36169.964205.776200.058118.306193.870168.009151.777198.589177.212
37107.486113.820264.434173.840134.020256.407221.662114.100258.968
3882.22296.709101.94694.497150.815139.69288.207126.417121.590
3971.434100.44095.85184.124181.053121.111113.964168.324102.433
40121.865147.288131.37058.999108.255161.30276.354130.551135.443
41173.617177.401234.773154.409229.659178.450210.027234.848194.605
4292.570127.033128.485120.396180.311143.743113.738158.973126.733
4375.441110.67165.551144.454217.324111.05580.645138.96371.760
4492.572148.911124.38598.960160.314171.51659.378123.322116.718
Notes: μS, σS, τS: ExG SSRT parameters for single cluster SST data; μA, σA, τA: ExG SSRT parameters for type-A cluster SST data; μB, σB, τB: ExG SSRT parameters for type-B cluster SST data; IBPA: #Chains = 3; Simulations = 20,000; Burn-in = 5000 (for both single and mixture parameters).

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Figure 1. Graphical representation of the complete horse race model: GORT: go reaction times, SRRT: Signal respond reaction times, SSRT: Stop Signal reaction times, T d : stop signal delay (SSD).
Figure 1. Graphical representation of the complete horse race model: GORT: go reaction times, SRRT: Signal respond reaction times, SSRT: Stop Signal reaction times, T d : stop signal delay (SSD).
Brainsci 11 01102 g001
Figure 2. SSRT estimation in terms of context (constant/distribution) and components (single/mixture): current literature (path 1-1,1-2,2-1); this study (path 2-2).
Figure 2. SSRT estimation in terms of context (constant/distribution) and components (single/mixture): current literature (path 1-1,1-2,2-1); this study (path 2-2).
Brainsci 11 01102 g002
Figure 3. Bayesian Mixture Ex-Gaussian SSRT model using plate notation. Filled in shapes indicate known values.
Figure 3. Bayesian Mixture Ex-Gaussian SSRT model using plate notation. Filled in shapes indicate known values.
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Figure 4. Two -Stage Bayesian Parametric Approach (TSBPA) with ex-Gaussian distributional assumption framework. Filled in shapes indicate known values.
Figure 4. Two -Stage Bayesian Parametric Approach (TSBPA) with ex-Gaussian distributional assumption framework. Filled in shapes indicate known values.
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Figure 5. Plot of statistics difference of fitted IBPA ex-Gaussian SSRT random variable by cluster type (n = 44): (a) skewness and (b) kurtosis.
Figure 5. Plot of statistics difference of fitted IBPA ex-Gaussian SSRT random variable by cluster type (n = 44): (a) skewness and (b) kurtosis.
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Figure 6. The density and cumulative distribution function (CDF) of overall sample cluster type SSRT, single SSRT and mixture SSRT with Ex-Gaussian parametric distribution: (a) density and (b) cumulative distribution function.
Figure 6. The density and cumulative distribution function (CDF) of overall sample cluster type SSRT, single SSRT and mixture SSRT with Ex-Gaussian parametric distribution: (a) density and (b) cumulative distribution function.
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Figure 7. Plot of difference of SSRT index statistics ( S S R T M i x t u r e vs. S S R T S i n g l e ) by weight W A ( n = 44 ) : (a) means and (b) variances.
Figure 7. Plot of difference of SSRT index statistics ( S S R T M i x t u r e vs. S S R T S i n g l e ) by weight W A ( n = 44 ) : (a) means and (b) variances.
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Figure 8. Plot of overall test results of single SSRT versus mixture SSRT: (a) Two-sample KS test statistics and (b) cut-off point of the test p-value.
Figure 8. Plot of overall test results of single SSRT versus mixture SSRT: (a) Two-sample KS test statistics and (b) cut-off point of the test p-value.
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Table 1. Partition of stop task (SST) data to Type A SST data and Type B SST data given previous trial type (go/stop) [15].
Table 1. Partition of stop task (SST) data to Type A SST data and Type B SST data given previous trial type (go/stop) [15].
Data Previous Trial
GoStop
Current TrialGo G o A G o B
Stop S t o p A S t o p B
Table 2. Descriptive results for mean and standard deviation of fitted IBPA ex-Gaussian distribution to SSRT given cluster type (n = 44).
Table 2. Descriptive results for mean and standard deviation of fitted IBPA ex-Gaussian distribution to SSRT given cluster type (n = 44).
(a) Descriptive Results
Statistics (Mean (95%CI))
Cluster TypeMeanSt.d
Type S196.8157.8
(173.5, 220.1)(139.4, 176.2)
Type A265.0217.7
(235.8, 294.2)(199.1, 236.2)
Type B253.6213.2
(222.9, 284.2)(195.7, 231.0)
(b) Two Samplettest
Statistics (Mean (95% CI))
ComparisonMeanSt.d
Type B vs. Type A−11.4−4.4
(−53.5, 30.7)(−33.5, 24.7)
Type B vs. Type S56.8 ***55.5 ***
(32.2, 81.4)(35.4, 75.7)
Type A vs. Type S68.2 ***59.9 ***
(48.3, 88.1)(44.4, 75.4)
Type M vs. Type S63.7 ***71.4 ***
(57.2, 70.1)(62.5, 80.3)
Notes: W A ¯ = 0.59 , *** p-value < 0.0005 .
Table 3. Two-sample Kolmogorov–Smirnov test results for the Single SSRT distribution versus Mixture posterior SSRT distribution (n = 44).
Table 3. Two-sample Kolmogorov–Smirnov test results for the Single SSRT distribution versus Mixture posterior SSRT distribution (n = 44).
Alternative Hypothesis
Unequal Greater Less
#Statisticsp-ValueStatisticsp-ValueStatisticsp-Value
10.27080.00170.04170.84650.27080.0009
20.26040.00290.02080.95920.26040.0015
30.33330.00010.07290.60020.33330.0001
40.34380.00010.04170.84650.34380.0001
50.23960.00790.03120.91050.23960.0040
60.28120.00090.04170.84650.28120.0005
70.30210.00030.07290.60020.30210.0002
80.21880.02000.03120.91050.21880.0101
90.36460.00010.05210.77070.36460.0001
100.23960.00790.03120.91050.23960.0040
110.32290.00010.04170.84650.32290.0001
120.32290.00010.00001.00000.32290.0001
130.30210.00030.02080.95920.30210.0002
140.23960.00790.01040.98960.23960.0040
150.32290.00010.06250.68730.32290.0001
160.25000.00480.03120.91050.25000.0025
170.32290.00010.04170.84650.32290.0001
180.35420.00010.00001.00000.35420.0001
190.26040.00290.04170.84650.26040.0015
200.26040.00290.03120.91050.26040.0015
210.38540.00010.10420.35290.38540.0001
220.34380.00010.04170.84650.34380.0001
230.36460.00010.11460.28350.36460.0001
240.30210.00030.01040.98960.30210.0002
250.48960.00010.08330.51340.48960.0001
260.26040.00290.01040.98960.26040.0015
270.39580.00010.07290.60020.39580.0001
280.27080.00170.02080.95920.27080.0009
290.23960.00790.01040.98960.23960.0040
300.37500.00010.07290.60020.37500.0001
310.40620.00010.03120.91050.40620.0001
320.25000.00480.02080.95920.25000.0025
330.25000.00480.02080.95920.25000.0025
340.15620.19230.00001.00000.15620.0960 *
350.25000.00480.01040.98960.25000.0025
360.30210.00030.03120.91050.30210.0002
370.19790.04630.01040.98960.19790.0233 *
380.31250.00020.03120.91050.31250.0001
390.29170.00050.06250.68730.29170.0003
400.37500.00010.05210.77070.37500.0001
410.21880.02000.04170.84650.21880.0101
420.30210.00030.02080.95920.30210.0002
430.21880.02000.01040.98960.21880.0101
440.40620.00010.03120.91050.40620.0001
Notes: IBPA: #Chains = 3; Simulations = 20,000; Burn-in = 5000 (for both single and mixture parameters); The sample size for K-S test for each distribution was n = m = 96; *: Exceptional case.
Table 4. Two-sample Kolmogorov–Smirnov test results for the cluster type SSRT distributions in the hypothesis test (17) (n = 44).
Table 4. Two-sample Kolmogorov–Smirnov test results for the cluster type SSRT distributions in the hypothesis test (17) (n = 44).
ComparisonStatisticsp-Value
S S R T S i n g l e vs. S S R T M i x t u r e 0.2095<0.0312
S S R T S i n g l e vs. S S R T B 0.1984<0.0562
S S R T S i n g l e vs. S S R T A 0.2256<0.0152
S S R T B vs. S S R T A 0.0653>0.9999
Note: The sample sizes for K-S test for both distributions were n = m = 96 . θ S = ( μ T ¯ , σ T ¯ , τ T ¯ ) = ( 78.4 , 93.9 , 73.1 ) , θ A = ( μ A ¯ , σ A ¯ , τ A ¯ ) = ( 94.0 , 134.5 , 104.8 ) , θ B = ( μ B ¯ , σ B ¯ , τ B ¯ ) = ( 90.9 , 142.3 , 99.0 ) and θ M = ( W A ¯ , θ A , θ B ) , with W A ¯ = 0.59 .
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Soltanifar, M.; Escobar, M.; Dupuis, A.; Schachar, R. A Bayesian Mixture Modelling of Stop Signal Reaction Time Distributions: The Second Contextual Solution for the Problem of Aftereffects of Inhibition on SSRT Estimations. Brain Sci. 2021, 11, 1102. https://doi.org/10.3390/brainsci11081102

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Soltanifar M, Escobar M, Dupuis A, Schachar R. A Bayesian Mixture Modelling of Stop Signal Reaction Time Distributions: The Second Contextual Solution for the Problem of Aftereffects of Inhibition on SSRT Estimations. Brain Sciences. 2021; 11(8):1102. https://doi.org/10.3390/brainsci11081102

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Soltanifar, Mohsen, Michael Escobar, Annie Dupuis, and Russell Schachar. 2021. "A Bayesian Mixture Modelling of Stop Signal Reaction Time Distributions: The Second Contextual Solution for the Problem of Aftereffects of Inhibition on SSRT Estimations" Brain Sciences 11, no. 8: 1102. https://doi.org/10.3390/brainsci11081102

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