Aquaculture expansion to meet global protein demand has intensified concerns over nutrient pollution and greenhouse gas (GHG) emissions. While floating treatment wetlands (FTWs) are proven for water quality improvement, their potential to mitigate GHG emissions in marine aquaculture remains poorly understood. This study quantitatively evaluated the dual capacity of Sesuvium portulacastrum FTWs to (a) regulate dissolved inorganic nitrogen (DIN) and (b) reduce CO
2/N
2O emissions in grouper aquaculture systems. DIN speciation (NH
4+, NO
2−, NO
3−) and CO
2/N
2O fluxes of six controlled ponds (three FTW and three control) were monitored for 44 days. DIN in the FTW group was approximately 90 μmol/L lower than that in the control group, and the water in the plant group was more “oxidative” than that in the control group. The former groups were dominated by NO
3−, with lower dissolved inorganic carbon (DIC) and N
2O concentrations, whereas the latter were dominated by NH
4+ during the first 20 days of the experiment and by NO
2− at the end of the experiment, with higher DIC and N
2O concentrations on average. Higher primary production may be the reason that the DIC concentration was lower in the plant group than in the control group, whereas efficient nitrification and uptake by plants reduced the availability of NH
4+ in the plant group, thereby reducing the production of N
2O. A comparison of the CO
2 and N
2O flux potentials in the plant group and control group revealed that, in the presence of FTWs, the CO
2 and N
2O emissions decreased by 14% and 36%, respectively. This showed that
S. portulacastrum FTWs effectively couple DIN removal with GHG mitigation, offering a nature-based solution for sustainable aquaculture. Their low biomass requirement enhances practical scalability.
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