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Proteomes, Volume 8, Issue 4

2020 December - 11 articles

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Articles (11)

  • Article
  • Open Access
3 Citations
4,985 Views
14 Pages

2 December 2020

Proximity biotinylation was developed to detect physiologically relevant protein–protein interactions in living cells. In this method, the protein of interest is tagged with a promiscuous biotin ligase, such as BioID or BioID2, which produces a...

  • Communication
  • Open Access
8 Citations
5,323 Views
12 Pages

Discovery of Candidate Stool Biomarker Proteins for Biliary Atresia Using Proteome Analysis by Data-Independent Acquisition Mass Spectrometry

  • Eiichiro Watanabe,
  • Yusuke Kawashima,
  • Wataru Suda,
  • Tomo Kakihara,
  • Shinya Takazawa,
  • Daisuke Nakajima,
  • Ren Nakamura,
  • Akira Nishi,
  • Kan Suzuki and
  • Jun Fujishiro
  • + 1 author

27 November 2020

Biliary atresia (BA) is a destructive inflammatory obliterative cholangiopathy of the neonate that affects various parts of the bile duct. If early diagnosis followed by Kasai portoenterostomy is not performed, progressive liver cirrhosis frequently...

  • Commentary
  • Open Access
2 Citations
3,007 Views
6 Pages

23 November 2020

Peer review is the way in which we, as scientists, criticise, check, and confirm the findings of our colleagues. The process of peer review relies on individuals in all fields applying their particular expertise and determining if they agree with the...

  • Article
  • Open Access
13 Citations
5,618 Views
18 Pages

The Constitutive Proteome of Human Aqueous Humor and Race Specific Alterations

  • Sai Karthik Kodeboyina,
  • Tae Jin Lee,
  • Lara Churchwell,
  • Lane Ulrich,
  • Kathryn Bollinger,
  • David Bogorad,
  • Amy Estes,
  • Wenbo Zhi,
  • Shruti Sharma and
  • Ashok Sharma

18 November 2020

Aqueous humor (AH) is the fluid in the anterior and posterior chambers of the eye that contains proteins regulating ocular homeostasis. Analysis of aqueous humor proteome is challenging, mainly due to low sample volume and protein concentration. In t...

  • Article
  • Open Access
10 Citations
4,019 Views
9 Pages

Quantitative Proteomic Analysis of Biogenesis-Based Classification for Extracellular Vesicles

  • Linwen Zhang,
  • Jeremie Parot,
  • Vincent A. Hackley and
  • Illarion V. Turko

6 November 2020

Extracellular vesicles (EVs) are traditionally divided into two major groups: (i) large vesicles originating from plasma membrane and called microvesicles, and (ii) small vesicles originating from the endoplasmic membrane and called exosomes. However...

  • Article
  • Open Access
8 Citations
3,301 Views
8 Pages

Ovarian Cancer: Tumor-Specific Urinary Micro-Peptides Profiling as Potential Biomarkers for Early Diagnosis

  • Sulafa S. Murgan,
  • Faisal J. Abd Elaziz,
  • Abubakr M. A. Nasr,
  • Mona E. E. Elfaki and
  • Eltahir A. G. Khalil

29 October 2020

Ovarian cancer is the second major lethal gynecologic malignancy in developing countries. This study aimed to characterize urinary micro-peptides as potential diagnostic biomarkers for ovarian cancer. In a prospective, longitudinal and case-controlle...

  • Article
  • Open Access
8 Citations
4,110 Views
14 Pages

28 October 2020

PromarkerD is a proteomics derived test for predicting diabetic kidney disease that measures the concentrations of three plasma protein biomarkers, APOA4, CD5L and IBP3. Antibodies against these proteins were developed and applied to a multiplexed im...

  • Article
  • Open Access
23 Citations
5,203 Views
17 Pages

Radiation Response of Human Cardiac Endothelial Cells Reveals a Central Role of the cGAS-STING Pathway in the Development of Inflammation

  • Jos Philipp,
  • Ronan Le Gleut,
  • Christine von Toerne,
  • Prabal Subedi,
  • Omid Azimzadeh,
  • Michael J. Atkinson and
  • Soile Tapio

26 October 2020

Radiation-induced inflammation leading to the permeability of the endothelial barrier may increase the risk of cardiovascular disease. The aim of this study was to investigate potential mechanisms in vitro at the level of the proteome in human corona...

  • Article
  • Open Access
29 Citations
4,200 Views
19 Pages

Heat Stress Triggers Differential Protein Accumulation in the Extracellular Matrix of Sorghum Cell Suspension Cultures

  • Mamosa G. Ngcala,
  • Tatenda Goche,
  • Adrian P. Brown,
  • Stephen Chivasa and
  • Rudo Ngara

22 October 2020

Plants reprogram gene expression as an adaptive response to survive high temperatures. While the identity and functions of intracellular heat stress-responsive proteins have been extensively studied, the heat response of proteins secreted to the extr...

  • Article
  • Open Access
29 Citations
5,803 Views
17 Pages

Short-Chain Fatty Acids Modulate Metabolic Pathways and Membrane Lipids in Prevotella bryantii B14

  • Andrej Trautmann,
  • Lena Schleicher,
  • Simon Deusch,
  • Jochem Gätgens,
  • Julia Steuber and
  • Jana Seifert

16 October 2020

Short-chain fatty acids (SCFAs) are bacterial products that are known to be used as energy sources in eukaryotic hosts, whereas their role in the metabolism of intestinal microbes is rarely explored. In the present study, acetic, propionic, butyric,...

  • Article
  • Open Access
7 Citations
6,225 Views
18 Pages

Differential Protein Expression in Striatal D1- and D2-Dopamine Receptor-Expressing Medium Spiny Neurons

  • M. Shahid Mansuri,
  • Gang Peng,
  • Rashaun S. Wilson,
  • TuKiet T. Lam,
  • Hongyu Zhao,
  • Kenneth R. Williams and
  • Angus C. Nairn

13 October 2020

Many neurological disorders and diseases including drug addiction are associated with specific neuronal cell types in the brain. The striatum, a region that plays a critically important role in the development of addictive drug-related behavior, prov...

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Proteomes - ISSN 2227-7382