A Noninvasive Risk Stratification Tool Build Using an Artificial Intelligence Approach for Colorectal Polyps Based on Annual Checkup Data
Abstract
:1. Introduction
2. Materials and Methods
2.1. Study Participants
2.2. Colonoscopy Procedure and Abdominal Ultrasonography
2.3. Risk Stratification Tool Building
- Step 1:
- Collect data from annual health check-ups. All risk factors are indexed from i = 1…N, the value of the risk factor is xi, where there are N risk factors in total.
- Step 2:
- Pre-screen with a z-test for two sample proportions with a significance level equal to 0.05 is applied to select potential risk factors. Where the two sample proportions are calculated asFor all risk factor i,
- phi = the proportion of patients who has colorectal polyps for patients with risk factor xi = h − 1.
That is,- p1i = the proportion of patients who has colorectal polyps for patients with risk factor xi = 0.
- p2i = the proportion of patients who has colorectal polyps for patients with risk factor xi = 1.
- Step 3:
- The null and alternative hypothesis is stated as below:Null Hypothesis: p1i = p2i = …. phi
- We record all risk factors which has a significantly different sample proportion between patients with and without colorectal polyps.
- Step 4:
- Logistics regression is applied for each risk factor to calculate the discriminability for each risk factor. Based on the logistic regression, we identified the demographic risk factors which can segregate patients into different sub-groups for the machine learning process.
- Step 5:
- Machine learning is applied to each sub-group to construct the risk stratification tool.
- Step 6:
- We output the system of models which consisted of multiple random forest models.
- Step 7:
- Output our four-fold-cross validation.
2.4. Statistical Analyses
2.5. Machine Learning Algorithm
- Step 1:
- Input all risk factors as vector X = <x1……xh> and the y = 1 if a patient is diagnosed with colorectal polyps, and zero otherwise. Moreover, input the demographic factors for aggregating patients into subgroups. Go to Step 2.
- Step 2:
- Segregate all patients into subgroups. Index subgroups as k = 1…N for N groups in total. Let k =1 and go to Step 3.
- Step 3:
- Input all risk factors X and y in the kth sub-group. Go to Step 4.
- Step 4:
- Input all data in with path_name = group k, with the following specification of random foreackage in python. We selected the four-fold validation, thus 75% of data will be randomly selected for modeling building and 25% will be reserved for validation. For each run, the random forest will repeat four times for validation. Output the model and go to Step 5.Branch criterion: gini indexNumber of estimators (number of decision trees): 1000Min_samples_leaf = 5Class weight: balancedValidation: Four-foldCalculate the following statistics:Specificity = True negative/(true negative + false positive)Sensitivity = True positive/(true positive + false negative)Area Under Curve (AUC)
- Step 5:
- Collected the outputted model and check if k = N, if not let k = k + 1 and go to Step 3, otherwise end the algorithm.
3. Results
3.1. Statistical Analysis
3.2. Noninvasive Diagnostics Tool with Random Forests
4. Discussion
5. Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
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Total Number | n, % | 20,129 |
---|---|---|
Gender | Ratio of male to female (n/n) | 11,570:8559 |
Polyp | ||
Colorectal polyp (n, %) | 5450, 27.08% | |
Gallbladder polyps (n, %) | 2188, 10.87% | |
Gallbladder stone (n, %) | 1106, 5.49% | |
Gallbladder problem | 3191, 15.85% | |
Hypertension | (n, %) | 1684, 8.37% |
Helicobacter pylori infection | (n, %) | 751, 3.73% |
Tooth disease | 15,346, 76.24% | |
Periodontal disease (n, %) | 8917, 44.30% | |
Chronic gingivitis (n, %) | 4168, 20.71% | |
Chronic periodontitis (n, %) | 11,655, 57.90% | |
BMI | ||
Underweight (n, %) | 805, 4% | |
Normal (n, %) | 9090, 45.16% | |
Overweight (n, %) | 6046, 30.04% | |
Obesity (n, %) | 4188, 20.81% | |
Age | Median (range) | 50 (18–96) years |
Total cholesterol | 2818, 14% | |
HDL | 2617, 13% | |
Triglycerides | 3452, 17% |
Regardless of Gender | Male | Female | |||||
---|---|---|---|---|---|---|---|
Parameters | p-Value | AUC | p-Value | AUC | p-Value | AUC | |
Age | (>50 years = 1) | <0.0001 | 0.5847 | <0.0001 | 0.5906 | <0.0001 | 0.5900 |
Helicobacter pylori | (Yes = 1) | <0.0001 | 0.5113 | <0.0001 | 0.5104 | <0.0001 | 0.5092 |
Hypertension | (Yes = 1) | <0.0001 | 0.5142 | 0.0029 | 0.5084 | <0.0001 | 0.5240 |
Tooth disease | Total | 0.3734 | 0.503 | 0.0053 | 0.5118 | 0.1041 | 0.5086 |
Gallbladder | (Yes = 1) | <0.0001 | 0.514 | 0.002 | 0.5119 | 0.0185 | 0.5105 |
BMI | |||||||
Underweight = 0 | <0.0001 | 0.5604 | 0.0012 | 0.5389 | <0.0001 | 0.5709 | |
Normal = 1 | 0.0055 | 0.1301 | 0.0341 | ||||
Overweight = 2 | <0.0001 | 0.0017 | 0.008 | ||||
Obesity = 3 |
Gender | Age | BMI | Sensitivity | Specificity | AUC |
---|---|---|---|---|---|
Female | <50 years old | Normal | 0.22 | 0.74 | 0.61 |
Overweight | 0.09 | 0.83 | 0.76 | ||
Obese | 0.14 | 0.79 | 0.91 | ||
Underweight | 0.55 | 0.50 | 0.66 | ||
≥50 years old | Normal | 0.35 | 0.66 | 0.68 | |
Overweight | 0.27 | 0.74 | 0.68 | ||
Obese | 0.34 | 0.74 | 0.85 | ||
Underweight | 0.05 | 0.67 | 0.79 | ||
Male | <50 years old | Normal | 0.38 | 0.68 | 0.63 |
Overweight | 0.39 | 0.59 | 0.68 | ||
Obese | 0.29 | 0.67 | 0.83 | ||
Underweight | 0.11 | 0.72 | 0.75 | ||
≥50 years old | Normal | 0.56 | 0.47 | 0.67 | |
Overweight | 0.47 | 0.52 | 0.70 | ||
Obese | 0.43 | 0.57 | 0.87 | ||
Underweight | 0.28 | 0.65 | 0.80 |
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Lee, C.; Lin, T.-H.; Lin, C.-J.; Kuo, C.-F.; Pai, B.C.-J.; Cheng, H.-T.; Lai, C.-C.; Chen, T.-H. A Noninvasive Risk Stratification Tool Build Using an Artificial Intelligence Approach for Colorectal Polyps Based on Annual Checkup Data. Healthcare 2022, 10, 169. https://doi.org/10.3390/healthcare10010169
Lee C, Lin T-H, Lin C-J, Kuo C-F, Pai BC-J, Cheng H-T, Lai C-C, Chen T-H. A Noninvasive Risk Stratification Tool Build Using an Artificial Intelligence Approach for Colorectal Polyps Based on Annual Checkup Data. Healthcare. 2022; 10(1):169. https://doi.org/10.3390/healthcare10010169
Chicago/Turabian StyleLee, Chieh, Tsung-Hsing Lin, Chen-Ju Lin, Chang-Fu Kuo, Betty Chien-Jung Pai, Hao-Tsai Cheng, Cheng-Chou Lai, and Tsung-Hsing Chen. 2022. "A Noninvasive Risk Stratification Tool Build Using an Artificial Intelligence Approach for Colorectal Polyps Based on Annual Checkup Data" Healthcare 10, no. 1: 169. https://doi.org/10.3390/healthcare10010169