Role of Single Nucleotide Variants in the YAP1 Gene in Adolescents with Polycystic Ovary Syndrome
Abstract
:1. Introduction
2. Materials and Methods
2.1. Participants
2.2. Examination
2.3. SNV Selection
2.4. SNV Genotyping
2.5. Statistical Analysis
3. Results
4. Discussion
5. Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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SNV | MAF in Europe a | HGVS Nomenclature (Reference Sequence: NM_001130145.2) | Published Association [12] | Population |
---|---|---|---|---|
rs11225138 | 0.08 | c.572+8773G > C | Higher LH level in PCOS group | Han Chinese, adults |
rs11225161 | 0.08 | c.803-6130C > T | Difference in PCOS and control group, additionally association with glucose level in OGTT | Han Chinese, adults |
rs11225166 | 0.09 | c.1033-3886G > T | Association with glucose level in OGTT | Han Chinese, adults |
rs3858420 | 0.33 | c.1276+42= | NR | NR |
rs79981660 | 0.04 | c.985-20G > A | NR | NR |
Variable | PCOS Group (n = 61) | Risk Group (n = 22) | Control Group (n = 66) | p-Value |
---|---|---|---|---|
Chronological age, median years (IQR) | 16 (2.0) | 15 (2.0) | 17 (1.0) | <0.001 |
Gynaecological age, median years (IQR) † | 4.0 (3.0) | 3.5 (2.0) | 4.0 (2.0) | 0.258 |
BMI, median percentile (IQR) | 83.7 (50.4) | 75.4 (42.1) | 45.0 (46.6) | <0.001 |
Individuals with BMI above the 85th percentile, n (%) | 30 (53.6) | 6 (27.3) | 9 (14.1) | <0.001 |
Waist–hip ratio, median (IQR) | 0.82 (0.12) | 0.80 (0.06) | 0.76 (0.06) | 0.001 |
mFG score, median (IQR) | 9.0 (6.0) | 8.0 (4.5) | 2.0 (2.0) | <0.001 |
GAGS score, mean (SD) | 14.4 (9.2) | 10.9 (8.8) | 6.9 (6.0) | <0.001 |
No acne, n (%) | 1 (1.9) | 2 (10.0) | 6 (15.0) | |
Mild acne, n (%) | 34 (65.4) | 13 (65.0) | 31 (77.5) | 0.149 |
Moderate acne, n (%) | 15 (28.8) | 4 (20.0) | 3 (7.5) | 0.003 |
Severe acne, n (%) | 2 (3.8) | 1 (5.0) | 0 (0) | 0.091 |
Polycystic ovary morphology on ultrasound, n (%) | 21 (34.4) | 3 (13.6) | 5 (7.6) | 0.001 |
SNV/ Genotype c | PCOS Group (n = 61) | Risk Group (n = 22) | Control Group (n = 66) | MAF | p-Value | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
HH n (%) | Hh n (%) | hh n (%) | MAF a | HH n (%) | Hh n (%) | hh n (%) | MAF b | HH n (%) | Hh n (%) | hh n (%) | MAF | ||
YAP1 rs79981660 | 57 (96.6) | 2 (3.4) | 0 (0) | 0.017 | 20 (95.2) | 1 (4.8) | 0 (0) | 0.024 | 60 (95.2) | 3 (4.8) | 0 (0) | 0.024 | 1.00 |
YAP1 rs11225138 | 52 (85.2) | 8 (13.1) | 1 (1.6) | 0.082 | 18 (81.8) | 4 (18.2) | 0 (0) | 0.091 | 56 (84.8) | 10 (15.2) | 0 (0) | 0.076 | 0.81 |
YAP1 rs11225161 | 49 (81.7) | 10 (16.7) | 1 (1.7) | 0.100 | 15 (75.0) | 5 (25.0) | 0 (0) | 0.125 | 49 (79.0) | 13 (21.0) | 0 (0) | 0.105 | 0.71 |
YAP1 rs11225166 | 46 (79.3) | 11 (19.0) | 1 (1.7) | 0.112 | 17 (77.3) | 5 (22.7) | 0 (0) | 0.114 | 47 (75.8) | 15 (24.2) | 0 (0) | 0.121 | 0.83 |
YAP1 rs3858420 | 27 (46.6) | 29 (50.0) | 2 (3.4) | 0.284 | 11 (50.0) | 7 (31.8) | 4 (18.2) | 0.341 | 35 (55.6) | 22 (34.9) | 6 (9.5) | 0.270 | 0.14 |
SNV | Modified Ferriman-Gallwey Score, Median (IQR) | BMI, Median Percentile (IQR) | Waist–Hip Ratio, Median (IQR) | Total Testosterone Level, Median (IQR) | LH, Mean (SD) | FSH, Median (IQR) | Estradiol, Median (IQR) | PCO Morphology on Ultrasound, n (%) | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
MAC (HH) | MiAC (Hh, hh) | p | MAC (HH) | MiAC (Hh, hh) | p | MAC (HH) | MiAC (Hh, hh) | p | MAC (HH) | MiAC (Hh, hh) | p | MAC (HH) | MiAC (Hh, hh) | p | MAC (HH) | MiAC (Hh, hh) | p | MAC (HH) | MiAC (Hh, hh) | p | MAC (HH) | MiAC (Hh, hh) | p | |
YAP1 rs79981660 | 9.0 (6.0) | 13.5 | 0.15 | 83.7 (51.5) | 86.4 | 0.73 | 0.82 (0.12) | 0.84 | 0.70 | 0.40 (0.40) | 0.62 | 0.48 | 8.1 (5.1) | 7.5 (5.6) | 0.87 | 5.5 (2.5) | 5.7 | 0.76 | 44.9 (24.9) | 36.2 | 0.54 | 19 (35.8) | 1 (50.0) | 1.00 |
YAP1 rs11225138 | 10.0 (6.0) | 8.5 (5.8) | 0.43 | 89.0 (56.6) | 71.6 (33.3) | 0.90 | 0.82 (0.11) | 0.83 (0.25) | 0.73 | 0.39 (0.40) | 0.56 (0.38) | 0.50 | 8.4 (5.2) | 6.1 (4.4) | 0.31 | 5.5 (2.5) | 6.3 (4.1) | 0.20 | 44.2 (23.2) | 34.4 (27.1) | 0.44 | 20 (40.8) | 1 (12.5) | 0.12 |
YAP1 rs11225161 | 10.0 (6.0) | 9.0 (6.0) | 0.82 | 83.7 (58.0) | 85.5 (33.0) | 0.47 | 0.82 (0.11) | 0.86 (0.22) | 0.49 | 0.38 (0.41) | 0.63 (0.36) | 0.16 | 8.2 (5.2) | 7.0 (4.9) | 0.55 | 5.4 (2.5) | 6.6 (2.8) | 0.09 | 44.9 (23.7) | 38.9 (20.9) | 0.48 | 19 (41.3) | 2 (20.0) | 0.21 |
YAP1 rs11225166 | 10.0 (6.0) | 10.0 (5.5) | 0.81 | 83.7 (58.0) | 85.5 (33.0) | 0.45 | 0.82 (0.11) | 0.86 (0.22) | 0.83 | 0.37 (0.40) | 0.64 (0.38) | 0.08 | 8.1 (5.1) | 7.9 (5.3) | 0.95 | 5.4 (2.4) | 6.3 (2.5) | 0.12 | 43.1 (23.2) | 41.2 (29.5) | 0.81 | 19 (43.2) | 2 (18.2) | 0.13 |
YAP1 rs3858420 | 8.5 (6.5) | 11.0 (5.8) | 0.17 | 78.4 (64.0) | 89.0 (47.0) | 0.66 | 0.83 (0.11) | 0.82 (0.13) | 0.42 | 0.41 (0.42) | 0.41 (0.38) | 0.89 | 7.4 (4.9) | 8.6 (5.3) | 0.46 | 5.5 (2.8) | 5.6 (2.2) | 0.25 | 45.0 (32.2) | 37.5 (21.0) | 0.14 | 11 (44.0) | 10 (33.3) | 0.42 |
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Lidaka, L.; Bekere, L.; Lazdane, G.; Lazovska, M.; Dzivite-Krisane, I.; Gailite, L. Role of Single Nucleotide Variants in the YAP1 Gene in Adolescents with Polycystic Ovary Syndrome. Biomedicines 2022, 10, 1688. https://doi.org/10.3390/biomedicines10071688
Lidaka L, Bekere L, Lazdane G, Lazovska M, Dzivite-Krisane I, Gailite L. Role of Single Nucleotide Variants in the YAP1 Gene in Adolescents with Polycystic Ovary Syndrome. Biomedicines. 2022; 10(7):1688. https://doi.org/10.3390/biomedicines10071688
Chicago/Turabian StyleLidaka, Lasma, Laine Bekere, Gunta Lazdane, Marija Lazovska, Iveta Dzivite-Krisane, and Linda Gailite. 2022. "Role of Single Nucleotide Variants in the YAP1 Gene in Adolescents with Polycystic Ovary Syndrome" Biomedicines 10, no. 7: 1688. https://doi.org/10.3390/biomedicines10071688
APA StyleLidaka, L., Bekere, L., Lazdane, G., Lazovska, M., Dzivite-Krisane, I., & Gailite, L. (2022). Role of Single Nucleotide Variants in the YAP1 Gene in Adolescents with Polycystic Ovary Syndrome. Biomedicines, 10(7), 1688. https://doi.org/10.3390/biomedicines10071688