Laminin-5, Fibronectin, and Type IV Collagen as Potential Biomarkers of Brain Glioma Malignancy
Abstract
:1. Introduction
2. Materials and Methods
2.1. Reagents
2.2. Biological Material
2.3. Procedure for Quantifying LN-5, FN, COL IV
2.4. SPRi Measurements
2.5. Methods Calibration and Quantitative Determinations
3. Results
3.1. Statistical Analysis
3.2. ROC Analysis
4. Discussion and Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
Appendix A
Paramete/ Biomarker | LN-5 [ng/mL] | FN [µg/mL] | COL IV [ng/mL] | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
K | G1 | G2 | G3 | G4 | K | G1 | G2 | G3 | G4 | K | G1 | G2 | G3 | G4 | |
Median | 27.89 | 21.52 | 28.15 | 48.04 | 69.75 | 351.41 | 432.36 | 334.71 | 628.92 | 803.34 | 334.35 | 394.37 | 304.09 | 795.19 | 912.39 |
Q1 | 32.25 | 28.79 | 30.91 | 53.19 | 73.00 | 396.47 | 438.62 | 395.04 | 777.51 | 908.45 | 398.82 | 397.09 | 310.09 | 829.04 | 958.91 |
Q3 | 23.57 | 19.57 | 24.32 | 45.70 | 60.11 | 292.16 | 352.09 | 297.42 | 613.45 | 698.63 | 288.69 | 338.79 | 297.35 | 708.64 | 889.69 |
MIN | 10.04 | 18.10 | 22.20 | 39.37 | 44.20 | 184.14 | 271.82 | 183.04 | 549.54 | 266.40 | 205.61 | 283.21 | 239.64 | 601.92 | 789.65 |
MAX | 52.23 | 36.58 | 37.00 | 63.36 | 81.00 | 484.18 | 444.98 | 443.27 | 912.20 | 994.07 | 449.87 | 399.81 | 312.69 | 874.64 | 997.64 |
Age—FN | |||||
---|---|---|---|---|---|
G1 | G2 | G3 | G4 | All samples | |
RSpearman | −1 | 0.29 | −0.27 | 0.02 | 0.42 |
p | - | >0.05 | >0.05 | >0.05 | <0.05 |
Age—LN-5 | |||||
G1 | G2 | G3 | G4 | All samples | |
RSpearman | 1 | −0.13 | −0.17 | 0.01 | 0.49 |
p | - | >0.05 | >0.05 | >0.05 | <0.05 |
Age—COL IV | |||||
G1 | G2 | G3 | G4 | All samples | |
RSpearman | −0.5 | −0.48 | 0.45 | −0.05 | 0.47 |
p | >0.05 | >0.05 | >0.05 | >0.05 | <0.05 |
Tumour size—FN | |||||
G1 | G2 | G3 | G4 | All samples | |
RSpearman | - | −0.6 | 0 | −0.04 | −0.01 |
p | - | >0.05 | >0.05 | >0.05 | >0.05 |
Tumour size—LN-5 | |||||
G1 | G2 | G3 | G4 | All samples | |
RSpearman | - | −0.4 | −0.2 | 0.2 | 0.16 |
p | - | >0.05 | >0.05 | >0.35 | >0.05 |
Tumour size–COL IV | |||||
G1 | G2 | G3 | G4 | All samples | |
RSpearman | - | −0.4 | 0.8 | −0.46 | −0.19 |
p | - | >0.05 | >0.05 | <0.05 | >0.05 |
G1 | |||
---|---|---|---|
FN—LN5 | FN—COL4 | LN-5 COL4 | |
RSpearman | −1 | 0.5 | −0.5 |
p | >0.05 | >0.05 | >0.05 |
G2 | |||
FN—LN5 | FN—COL4 | LN-5 COL4 | |
RSpearman | −0.16 | −0.37 | 0.018 |
p | >0.05 | >0.05 | >0.05 |
G3 | |||
FN—LN5 | FN—COL4 | LN-5 COL4 | |
RSpearman | −0.50 | 0.57 | −0.72 |
p | >0.05 | >0.05 | >0.05 |
G4 | |||
FN—LN5 | FN—COL4 | LN-5 COL4 | |
RSpearman | 0.03 | 0.16 | −0.02 |
p | >0.05 | >0.05 | >0.05 |
All samples | |||
FN—LN5 | FN—COL4 | LN-5 COL4 | |
RSpearman | 0.56 | 0.65 | 0.64 |
p | <<0.01 | <<0.01 | <<0.01 |
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Variable | Range | Number of Patients |
---|---|---|
Age [years] | <50 | 16 |
>50 | 40 | |
Gender | male | 34 |
female | 22 | |
Tumour grade | G1 | 3 |
G2 | 10 | |
G3 | 7 | |
G4 | 36 | |
Tumour size [cm2] | <15 | 15 |
>15 | 15 | |
The presence of other neoplasms in the immediate family | yes | 26 |
no | 30 | |
Concomitant non-cancerous diseases | yes | 28 |
no | 28 |
Analytical Characteristics of the Methods Used | Characteristics of the Quantification Procedure Used | |||||
---|---|---|---|---|---|---|
Biomarker | Method | Analytical Characteristic | References | Biological Material | Dilution | pH |
LN-5 | SPRi biosensor [non fluidic] | Cantibody = 5 ng/mL LOD = 4 pg/mL LOQ = 14 pg/mL pH = 7.40 LR: 0.01–0.075 ng/mL | [18] | Blood plasma (blood centrifuged at 3000 rpm for 15 min then stored at −80 °C) | K G1 x1000 G2 G3 x1200 G4 | 7.40 |
FN | SPRi biosensor [non fluidic] | Cantibody = 4 µg/mL LOD = 1.5 ng/mL LOQ = 5 ng/mL pH = 7.40 LR: 5–100 µg/mL | [26] | K G1 x5 G2 G3 x10 G4 | ||
COL IV | SPRi biosensor [non fluidic] | Cantibody = 6 µg/mL LOD = 2.4 ng/mL LOQ = 8 ng/mL pH = 7.40 LR: 10–150 ng/mL | [27] | K G1 x5 G2 G3 x10 G4 |
Parameter | LN-5 concentration [ng/mL] | FN concentration [µg/mL] | COL IV concentration [ng/mL] | ||||||
---|---|---|---|---|---|---|---|---|---|
Range | Median | p-Value | Range | Median | p-Value | Range | Median | p-Value | |
Tumour grade (G1–G2 vs. G3–G4) | |||||||||
G1 (3) | 18.13–36.58 | 21.08 | <0.01 | 271.82–444.88 | 432.36 | <0.01 | 283.21–399.81 | 394.37 | <0.01 |
G2 (10) | 22.26–37.00 | 28.15 | 183.04–443.27 | 334.70 | 239.64–312.69 | 304.10 | |||
G3 (7) | 39.37–63.36 | 48.51 | 549.54–912.20 | 628.92 | 601.92–874.64 | 795.19 | |||
G4 (36) | 44.20–81.02 | 69.23 | 266.40–994.07 | 803.34 | 789.65–997.64 | 912.39 | |||
Tumour size [cm2] | |||||||||
<15 (15) | 21.05–73.40 | 60.11 | 0.37 (NS) | 329.36–994.07 | 651.40 | 0.74 (NS) | 239.64–994.64 | 894.97 | 0.26 (NS) |
>15 (15) | 18.13–79.52 | 64.25 | 183.04–964.44 | 771.84 | 297.44–973.23 | 829.64 | |||
The presence of other neoplasms in the family | |||||||||
YES (26) | 18.13–81.37 | 58.80 | 0.76 (NS) | 266.40–994.07 | 747.56 | 0.77 (NS) | 269.36–997.64 | 890.40 | 0.98 (NS) |
NO (30) | 22.26–81.42 | 61.04 | 183.04–978.62 | 651.40 | 239.64–973.23 | 879.48 | |||
Concomitant non-cancerous diseases | |||||||||
YES (28) | 22.26–80.02 | 64.86 | 0.31 (NS) | 271.82–946.79 | 763.37 | 0.43 (NS) | 239.64–997.64 | 892.27 | 0.20 (NS) |
NO (28) | 18.13–81.42 | 59.71 | 183.04–994.07 | 719.45 | 269.36–994.64 | 871.97 |
AUC | p-Value | PPV [%] | NPV [%] | Sensitivity [%] | Specificity [%] | Cut-Off Point | |
---|---|---|---|---|---|---|---|
LN-5 | 0.87 | <<0.01 | 93.5 | 76.3 | 75.4 | 93.8 | 43.39 |
FN | 0.87 | <<0.01 | 100 | 76.2 | 73.7 | 100 | 532.95 |
COL IV | 0.85 | <<0.01 | 100 | 78.7 | 77.2 | 100 | 601.92 |
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Oldak, L.; Chludzinska-Kasperuk, S.; Milewska, P.; Grubczak, K.; Reszec, J.; Gorodkiewicz, E. Laminin-5, Fibronectin, and Type IV Collagen as Potential Biomarkers of Brain Glioma Malignancy. Biomedicines 2022, 10, 2290. https://doi.org/10.3390/biomedicines10092290
Oldak L, Chludzinska-Kasperuk S, Milewska P, Grubczak K, Reszec J, Gorodkiewicz E. Laminin-5, Fibronectin, and Type IV Collagen as Potential Biomarkers of Brain Glioma Malignancy. Biomedicines. 2022; 10(9):2290. https://doi.org/10.3390/biomedicines10092290
Chicago/Turabian StyleOldak, Lukasz, Sylwia Chludzinska-Kasperuk, Patrycja Milewska, Kamil Grubczak, Joanna Reszec, and Ewa Gorodkiewicz. 2022. "Laminin-5, Fibronectin, and Type IV Collagen as Potential Biomarkers of Brain Glioma Malignancy" Biomedicines 10, no. 9: 2290. https://doi.org/10.3390/biomedicines10092290