Pathogenic E. coli in the Food Chain across the Arab Countries: A Descriptive Review
Abstract
:1. Introduction
2. Epidemiology of Pathogenic E. coli Groups
2.1. Epidemiology of Enteropathogenic E. coli (EPEC)
2.2. Epidemiology of Enteroinvasive E. coli (EIEC)
2.3. Epidemiology of Enterotoxigenic E. coli (ETEC)
2.4. Epidemiology of Enterohemorrhagic E. coli (EHEC)
2.5. Epidemiology of Shiga Toxin-Producing E. coli (STEC)
2.6. Epidemiology of Enteroaggregative E. coli (EAEC)
Country | Tested Food Samples (Total Number) | % of E. coli-Positive Samples or Isolates No. | Virulence Genes (%) (Out of Total Number) of E. coli-Positive Samples | References |
---|---|---|---|---|
Algeria | Sheep carcasses (n = 363) | ND | eaeA (9.92) | [31] |
Bovine carcasses (n = 230) | 66 | eaeA (21.2); stx1 (10.6); stx2 (12.1); eaeA, stx (4.5) | [33] | |
Sardines (n = 100) | 32 | eaeA (14.3); eae, stx1 (14.3); stx2 (42.9); stx1, stx2 (14.3) | [35] | |
Shrimps (n = 50) | 66 | eaeA (33.3); stx1, stx2 (16.7); stx2 (16.7) | ||
Chicken samples (n = 32) | 56.3 | stx2 (5.6); eaeA (0); rfbE (0); fliC (0) | [36] | |
Retail chicken meat (n = 33) | 87.8 | stx1 (6.9); stx2 (3.4); ehxA (3.4) | [37] | |
Frozen beef liver (n = ND) | 92 isolates | iss (85.9); hylF (82.6); ompT (80.4); iroN (87); fimC (70.7); iutA (90.2); elt (5.4); stx (2.2); ipaH (2.2); eaeA (0); aggR (0) | [34] | |
Chicken samples (n = ND) | 17 isolates | iss (82.4); hlyF (52.9) ompT (76.5); iroN (52.9); iutA (52.9); fimC (88.2) | [83] | |
Frozen bovine meat (n = 756) | Five E. coli O157:H7 isolates | stx1 (20); stx2 (100); eae (80); ehxA (100) | [75] | |
Ovine carcasses (n = 151) | 13 E. coli O157:H7 isolates | eae (69.2); stx1 (7.7); stx2 (76.9) | [32] | |
Egypt | Fresh fishes (n = 45) | 15.6 | eaeA (57.1); stx1 (42.9); stx2 (0); hylaA (57.1); sta (57.1); Stb (42.8) | [38] |
Drinking water (n = 46) | 91 | stx1 (24.4); stx2 (2.4); eae (0); hly (4.8); fliCh7 (0) | [84] | |
Freshwater canal (n = ND) | 49 isolates | eae (2); stx1 (2); stx2 (0); hlyA (0); hly (0) | ||
Broiler meats (n = ND) | 11 isolates | iroN (90.9); ompA (81.8); iss (100); tsh (81.8); papC (81.8) | [85] | |
Karish cheese (n = 55) | 74.5 | stx (2.3); eaeA (0); astA (4.5); ehaA (34.8); lpfA (33.7); (3.4); iha (2.3); hlyA (0); cdt cnf (0) | [86] | |
Ras cheese (n = 60) | 21.7 | stx (0); eaeA (0); astA (9.1); ehaA (36.4); lpfA (45.5); (0); iha (0); hlyA (4.6); cdt cnf (4.6) | ||
Raw milk (n = 120) | 19.1 | stx1(21.7); stx2 (34.8); eaeA (17.3); ehxA (17.3) | [40] | |
Fresh beef (n = 27) | 100 | eae (18); ipaH (18); stx1 (18); stx2 (10) | [41] | |
Beef meat products (n = 218) | 18.3 | eae (30); ipaH (18); stx1(18); stx2 (18); eltB (8); estA (8); ial (2) | ||
Nile tilapia (Oreochromis niloticus) (n = ND) | Six isolates | eaeA (83.3); stx2 (50); aadA2 (50) | [39] | |
Minced meat (n = 50) | Eight | eaeA (12.5); stx1 (25); stx2 (12.5) | [42] | |
Luncheon (n = 50) | Four | eaeA (0); stx1 (0); stx2 (0) | ||
Beef burgers (n = 50) | Two | eaeA (100); stx1 (0); stx2 (0) | ||
Sausage (n = 50) | 10 | eaeA (0); stx1 (20); stx2 (0) | ||
Karish cheese (n = 60) | 3.3 | eaeA (50); stx1 (0); stx2 (50) | ||
Raw bovine milk (n = 121) | 13.2 | stx1 (12.5); stx2 (18.8); Sta (12.5); lt (0) | [87] | |
Meat products (n = 100) | 32 | lt (15.6); eae (12.5); stx1 (6.3); stx2 (9.4); bfpA (3.1); ipaH (3.1) | [71] | |
Drinking water (n = 300) | 5.3 | lt (25); st (12.5); stx1 (18.8); stx2 (6.3); eaeA (31.3) | [88] | |
Raw beef (n = 100) | ND | stx1 (6); stx2 (6) | [89] | |
Raw milk (n = 100) | ND | stx1 (7); stx2 (7) | ||
Sausages (n = 8) | 25 | eae (0); stx1 (50); stx2 (0); hlyA (50); hly (0) | [43] | |
Kofta (n = 6) | 33.3 | eae (0); stx1 (50); stx2 (50) hlyA (50); hly (0) | ||
Luncheon (n = 8) | 50 | eae (0); stx1 (0); stx2 (0); hlyA (0); hly (0) | ||
Chicken livers (n = 6) | 50 | eae (0); stx1 (0); stx2 (0); hlyA (0); hly (0) | ||
Oysters (n = 9) | 77.8 | eae (0); stx1 (0); stx2 (0); hlyA (0); hly (0) | ||
Calamari (n = 7) | 57.1 | eae (0); stx1 (0); stx2 (0); hlyA (0); hly (0) | ||
Bivalves (n = 7) | 100 | eae (0); stx1 (0); stx2 (0); hlyA (0); hly (0) | ||
Raw milk (n = 6) | 66.7 | eae (0); stx1 (0); stx2 (0); hlyA (0); hly (0) | ||
Yogurt (n = 4) | 100 | eae (0); stx1 (0); stx2 (0); hlyA (0); hly (0) | ||
Cheese (n = 4) | 75 | eae (0); stx1 (0); stx2 (0); hlyA (0); hly (0) | ||
Cheese (n = 4) | 75 | eae (0); stx1 (0); stx2 (0); hlyA (0); hly (0) | ||
Iraq | Beef carcasses (n = 120) | 50 (41.6) | eae (30.7); elt (34.6); esth (34.6); estp (34.6); stx1 (53.8); stx2 (53.8); aggR (0) | [44] |
Imported chicken carcasses (n = 120) | 52 (43.3) | eae (8.6); elt (91.3); esth (91.3); estp (91.3); stx1 (0); stx2 (0); aggR (8.6) | ||
Fish surfaces (n= 120) | 47 (39.1) | eae (0); elt (100); esth (100); sstp (100); stx1 (0); stx2 (0); aggR (0) | ||
Imported and local raw burgers (n = 120) | 45 (37.5) | eae (0); elt (71.4); esth (71.4); estp (71.4); stx1 (28.5); stx2 (28.5); aggR (0) | ||
Local raw ground meat (n = 120) | 46 (38.3) | eae (0); slt (100); ssth (100); sstp (100); stx1 (0); stx2 (0); aggR (0) | ||
Local raw milk (n = 120) | 43 (35.8) | eae (0); elt (0); esth (0); estp (0); stx1 (0); stx2 (0); aggR (0) | ||
Fish (n = 78) | 35.9 | stx1 (89.3); stx1 (85.7); rfb (0) | [90] | |
Camel meat (n = 50) | 14 | sta (100); uspA (42); stb (0); stb (0) | [72] | |
Frozen burger (n = 50) | 7 | sta (100); uspA (42); stb (0); lt (0) | [91] | |
Frozen chicken (n = 50) | 8 | sta (62.5); uspA (12.5); stb (0); lt (0) | ||
Frozen fish (n = 50) | 10 | sta (40); uspA (10); stb (0); lt (0) | ||
Jordan | Drinking water (n = ND) | 109 isolates | aat (12.8); aaic (2.8); eae (2.8); ipaH (1.8); stx1(0.9); stx2 (0) | [45] |
Lebanon | Shankleesh (dairy products) (n = 340) | 28.5 | eaeA (13.5); ehly (8.1); stx1 (13.5); stx2 (13.5) | [47] |
Baladi (dairy products) (n = 340) | 66.4 | eaeA (2.7); ehly (5.4); stx1 (37.8); stx1 (37.8); | ||
Kishk (dairy products) (n = 340) | 7.2 | eaeA (0); ehly (0); stx1 (10.8); stx1 (10.8); | ||
Raw vegetables (n = ND) | 60 isolates | stx1 (0); stx2 (0) | [92] | |
Morocco | Ground beef (n = 140) | 45 | eaeA (12.5); aggA (0); stx1 (4.7); stx2; (3.1); lt (0); St (0); hlyA (4.7); Saa (1.6); astA (4.7); Ial (0); ipaH (0); iucD (6.3); cnf1 (0); afa (0); sfa (1.6) | [48] |
Sausages (n = 120) | 30 | eaeA (2.8); aggA (0); stx1 (2.8); stx2 (0); Lt (5.6); St (0); hlyA (0); saa (0); astA (27.8); Ial (0); ipaH (0); iucD (16.7); cnf1 (0); afa (0); pap (5.6); sfa (0) | ||
Turkey (n = 200) | 35.5 | eaeA (2.8); aggA (0); stx1 (0); stx2 (0); lt (0); st (1.4); hlyA (2.8); saa (0); astA (19.7); ial (0); ipaH (8.5); iucD (33.8); cnf1 (0); afa (0); pap (2.8); sfa (0) | ||
Well water (n = 50) | 48 | eaeA (0); aggA (0); stx1 (0); stx2 (0); lt (0); st (4.2); hlyA (4.4); saa (0); astA (0); Ial (0); ipaH (0); iucD (4.2); cnf1 (0); afa (4.2); pap (0); sfa (0) | ||
Shellfish (n = 82) | 6.3 | eaeA (0);stx1 (100); stx2 (60) | [93] | |
Food products (n = 7200) | 3.4 | hlyA (4.3); pap (17.1); sfa (2.9); stx1 (10); stx2 (4.3); eae (4.3) | [94] | |
Ground beef (n = 140) | 2.1 | stx1 (100); stx2 (66.7); eaeA (66.7); hlyA (100) | [95] | |
Sausage (n = 120) | 0.8 | stx1 (100); stx2 (0); eaeA (0); hlyA (0) | ||
Libya | Raw cow’s milk (n = 28) | 10.7 | vt (33.3); eaeA (33.3) | [49] |
Raw camel’s milk (n = 9) | 33.3 | vt (0); eaeA (0) | ||
Raw goat’s milk (n = 7) | 28.6 | vt (100); eaeA (100) | ||
Fermented cow’s milk (n = 28) | 25 | vt (75.7); eaeA (75.7) | ||
Maasora cheese (n = 21) | 42.9 | vt (22.2); eaeA (22.2) | ||
Ricotta cheese (n = 10) | 30 | vt (0); eaeA (0) | ||
Palestine | Raw beef (n = 300) | 44 STEC isolates | stx1 (68); stx2 (63) | [96] |
Chicken meat (n = 15) | 100 | vt (0); eaeA (0); bfpA (0); aggR (6.6); daaE (0); lT (13.3); sT (46.6) | [50] | |
Turkey (n = 10) | 100 | vt (0); eaeA (0); bfpA (0); aggR (0); daaE (0); lT (0); sT (20) | ||
Qatar | Chickens (n = 158) | 65 APEC | ompT (69), hlyF (69%), iroN (68%); tsh (54%); vat (4%); iss (70%); cvi/cva (59%); iucD (65%) | [52] |
Saudi Arabia | Raw beef (n = 100) | Two E. coli O157:H7 isolates | stx1 (100); stx2 (100); eae (50); hlyA (0) | [54] |
Raw mutton (n = 40) | One E. coli O157:H7 isolate | stx1 (100); stx2 (100); eae (100); hlyA (0) | ||
Raw chicken (n = 40) | One E. coli O157:H7 isolate | stx1 (100); stx2 (100); eae (100); hlyA (0) | ||
Ground beef (n = 80) | Four E. coli O157:H7 isolates | stx1 (75); stx2 (75); eae (0); hlyA (25) | ||
Beef burger (n = 20) | Two E. coli O157:H7 isolates | stx1 (50); stx2 (0); eae (0); hlyA (50) | ||
Ground chicken (n = 20) | One E. coli O157:H7 isolate | stx1 (100); stx2 (100); eae (0); hlyA (0) | ||
Milk (n = 540) | 15.93 | eaeA (44.2); stx2 (67.4) | [53] | |
Raw meat (n = 150) | 11.3 | eaeA (58.8); stx2 (94.1) | ||
Fresh vegetables and fruits (n = ND) | 16 E. coli isolates | eae (0); stx1 (0); stx2 (0) | [55] | |
Sudan | Drinking water (n = 184) | 46 | IPaH (12.7); stx (6.5); AggR (6.5); eae (0) | [97] |
United Arab Emirates | Camel meat (n = 140) | 4.3 (E. coli O157) | rfbE (100); flicH7 (58.3); hlyA (75); uidA (0); eaeA (91.7); stx2 (100); stx1 (0) | [56] |
Goat (n = 150) | Two (E. coli O157) | rfbE (100); flicH7 (0); hlyA (50); uidA (0); eaeA (100); stx2 (100); stx1 (0) | ||
Cattle (n = 137) | 1.5 (E. coli O157) | rfbE (100); flicH7 (0); hlyA (60); uidA (0); eaeA (60); stx2 (100); stx1 (0) |
3. Pathogenic Antibiotic Resistance in E. coli
4. Conclusions
Author Contributions
Funding
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Mohamed, M.-Y.I.; Habib, I. Pathogenic E. coli in the Food Chain across the Arab Countries: A Descriptive Review. Foods 2023, 12, 3726. https://doi.org/10.3390/foods12203726
Mohamed M-YI, Habib I. Pathogenic E. coli in the Food Chain across the Arab Countries: A Descriptive Review. Foods. 2023; 12(20):3726. https://doi.org/10.3390/foods12203726
Chicago/Turabian StyleMohamed, Mohamed-Yousif Ibrahim, and Ihab Habib. 2023. "Pathogenic E. coli in the Food Chain across the Arab Countries: A Descriptive Review" Foods 12, no. 20: 3726. https://doi.org/10.3390/foods12203726
APA StyleMohamed, M. -Y. I., & Habib, I. (2023). Pathogenic E. coli in the Food Chain across the Arab Countries: A Descriptive Review. Foods, 12(20), 3726. https://doi.org/10.3390/foods12203726