Analysis of Genetic Determinants Encoding Resistance to Heavy Metals and Disinfectants in Listeria monocytogenes
Abstract
:1. Introduction
2. Materials and Methods
2.1. L. monocytogenes Strains
2.2. DNA Isolation
2.3. Whole Genome Sequencing (WGS)
2.4. Genome Assembly and WGS Quality Control
2.5. MLST, cgMLST
2.6. SNP Analysis
2.7. In Silico Detection of Heavy Metals and Disinfectant Resistance Genes
3. Results and Discussion
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
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Strain ID | Lineage | Serogrup | Genes | Localization | Sequence Type | Clonal Complex | MST Cluster | Year of Isolation | Food Type | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
bcrABC | emrE | qacH | cadA1cadC1 | cadA2cadC2 | cadA3cadC3 | cadA4cadC4 | arsD1A1R1D2R2A2B1B2 | arsCBADR | |||||||||
3074 | I | IVb | - | - | - | - | - | - | + | + | - | chromosome—Genomic Island LGI2 | ST2 | CC2 | 2016 | raw cabbage salad | |
3115 | - | - | - | - | - | - | + | + | - | chromosome—Genomic Island LGI2 | ST145 | CC2 | 1 | 2018 | vegetable salad | ||
3262 | - | - | - | - | - | - | + | + | - | chromosome—Genomic Island LGI2 | ST145 | CC2 | 1 | 2017 | dumplings with cottage cheese | ||
3269 | - | - | - | - | - | - | + | + | - | chromosome—Genomic Island LGI2 | ST145 | CC2 | 1 | 2017 | pastries | ||
3400 | - | - | - | - | - | - | - | - | - | ST145 | CC2 | 1 | 2017 | strawberry sorbet | |||
3458 | - | - | - | - | - | - | + | + | - | chromosome—Genomic Island LGI2 | ST2 | CC2 | 2017 | dumplings with potato and cheese | |||
3490 | - | - | - | - | - | - | - | - | - | ST2 | CC2 | 2018 | milk ice cream | ||||
3542 | - | - | - | - | - | - | - | - | - | ST2 | CC2 | 4 | 2018 | fruity cake | |||
3543 | - | - | - | - | - | - | - | - | - | ST2 | CC2 | 4 | 2018 | fruity cake | |||
3569 | - | - | - | - | - | - | - | - | - | ST6 | CC6 | 2017 | frozen corn | ||||
4133 | - | - | - | - | - | - | - | - | - | ST6 | CC6 | 2018 | tartare | ||||
4247 | - | - | - | - | - | - | + | + | - | chromosome—Genomic Island LGI2 | ST145 | CC2 | 1 | 2018 | smoked salmon | ||
4260 | - | - | - | - | - | - | + | + | - | chromosome—Genomic Island LGI2 | ST145 | CC2 | 1 | 2018 | pastries | ||
4314 | - | - | - | - | - | - | - | - | - | ST6 | CC6 | 2 | 2018 | smoked mackerel | |||
4315 | + | - | - | - | + | - | - | - | - | plasmid pLM80-like | ST6 | CC6 | 2018 | smoked salmon | |||
4353 | - | - | - | - | - | - | + | + | - | chromosome—Genomic Island LGI2 | ST145 | CC2 | 1 | 2019 | dumplings with meat | ||
4416 | - | - | - | - | - | - | + | + | - | chromosome—Genomic Island LGI2 | ST2 | CC2 | 2019 | pastries | |||
4563 | - | - | - | - | - | - | - | - | - | ST6 | CC6 | 2 | 2019 | trout fillet | |||
3318 | IIb | - | - | - | - | - | - | - | - | - | ST2 | CC2 | 2017 | cake | |||
3340 | - | - | - | - | - | - | + | + | - | chromosome—Genomic Island LGI2 | ST3 | CC3 | 2017 | cake | |||
3054 | II | IIa | - | - | - | - | - | - | - | - | - | ST8 | CC8 | 2016 | broccoli pasta salad | ||
3187 | - | - | - | - | - | - | + | + | - | chromosome—Genomic Island LGI2 | ST451 | CC11 | 2017 | tartar label | |||
3355 | - | - | - | - | - | - | - | - | - | ST37 | CC37 | 2017 | smoked mackerel paste | ||||
3394 | - | - | - | - | - | - | - | - | - | ST121 | CC121 | 2017 | smoked salmon | ||||
3395 | - | - | - | - | - | - | - | - | - | ST91 | CC14 | 2017 | white turnip salad | ||||
3460 | - | - | - | - | - | - | - | - | - | ST37 | CC37 | 3 | 2017 | dumplings with meat | |||
3480 | - | - | - | - | - | - | - | - | - | ST121 | CC121 | 2017 | smoked salmon | ||||
3862 | - | - | - | - | - | - | - | - | - | ST124 | - | 5 | 2018 | vegetable mix | |||
3863 | - | - | - | - | - | - | - | - | - | ST124 | - | 5 | 2018 | vegetable mix | |||
3880 | - | - | - | - | - | - | - | - | - | ST394 | CC415 | 2018 | vegetables for frying | ||||
3881 | - | - | - | - | - | - | - | - | - | ST101 | CC101 | 2018 | frozen corn | ||||
3883 | - | - | - | - | - | - | - | - | - | ST155 | CC155 | 2018 | frozen stir fry vegetable | ||||
3941 | - | - | - | - | - | - | - | - | - | ST155 | CC155 | 2018 | vegetable salad | ||||
4059 | - | - | - | - | - | - | - | - | - | ST155 | CC155 | 2018 | ice cream | ||||
4072 | - | - | - | - | - | - | - | - | - | ST121 | CC121 | 2018 | smoked salmon | ||||
4082 | - | - | - | - | - | - | - | - | - | ST8 | CC8 | 2018 | pork sausages | ||||
4099 | - | - | - | - | - | - | - | - | - | ST20 | CC20 | 2018 | smoked salmon | ||||
4198 | - | - | - | - | - | - | - | - | - | ST37 | CC37 | 3 | 2018 | chicken fillet | |||
4199 | - | - | - | - | - | - | - | - | - | ST16 | CC8 | 2018 | cabbage salad | ||||
4313 | - | - | - | - | - | - | - | - | - | ST193 | CC193 | 2018 | smoked mackerel | ||||
4561 | - | - | - | - | - | - | - | - | - | ST10 | CC101 | 2019 | trout fillet | ||||
4574 | - | - | - | - | - | - | - | - | - | ST412 | CC412 | 2019 | frozen red pepper | ||||
3421 | IIc | - | - | - | - | - | - | - | - | - | ST9 | CC9 | 2017 | raw sausage | |||
3855 | + | - | - | - | + | - | - | - | - | plasmid pLM80-like | ST9 | CC9 | 2018 | chicken sausages | |||
3928 | - | - | - | - | - | - | - | - | - | plasmid pLM80-like | ST9 | CC9 | 2018 | ice cream |
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Maćkiw, E.; Kowalska, J.; Korsak, D.; Postupolski, J. Analysis of Genetic Determinants Encoding Resistance to Heavy Metals and Disinfectants in Listeria monocytogenes. Foods 2024, 13, 3936. https://doi.org/10.3390/foods13233936
Maćkiw E, Kowalska J, Korsak D, Postupolski J. Analysis of Genetic Determinants Encoding Resistance to Heavy Metals and Disinfectants in Listeria monocytogenes. Foods. 2024; 13(23):3936. https://doi.org/10.3390/foods13233936
Chicago/Turabian StyleMaćkiw, Elżbieta, Joanna Kowalska, Dorota Korsak, and Jacek Postupolski. 2024. "Analysis of Genetic Determinants Encoding Resistance to Heavy Metals and Disinfectants in Listeria monocytogenes" Foods 13, no. 23: 3936. https://doi.org/10.3390/foods13233936
APA StyleMaćkiw, E., Kowalska, J., Korsak, D., & Postupolski, J. (2024). Analysis of Genetic Determinants Encoding Resistance to Heavy Metals and Disinfectants in Listeria monocytogenes. Foods, 13(23), 3936. https://doi.org/10.3390/foods13233936