1. Introduction
Squid is a prominent species of marine cephalopod, possessing a number of advantageous biological characteristics. These include a brief life cycle, rapid growth rates, high energy conversion efficiency, and robust reproductive capacity [
1]. Its stock biomass accounts for approximately 36% of the total global marine organisms [
2], and the annual average catch in the last decade reached 4.3 million tons, accounting for 5% of the total global fish and cephalopod catch, occupying an important position in the marine fishery economy [
3]. However, the environmental challenges associated with the squid processing industry are increasingly evident. The processing of squid generates approximately 40–50% of by-products, primarily comprising the head, fins, feet, viscera, and underutilized outer coat and cartilage tissues. These by-products are currently primarily utilized as low-value feedstuffs, and their efficient utilization has not been achieved, resulting in significant organic pollution and the wastage of high-quality biomass resources [
4]. It is important to note that squid cartilage, as a typical processing by-product, is rich in collagen, chondroitin sulfate and other bioactive components, despite accounting for only 2% of the total mass of the raw material [
5]. The prevailing processing system predominantly treats it as a by-product, and this rudimentary disposal method not only exacerbates environmental concerns but also results in a substantial loss of valuable biological resources.
In recent years, major breakthroughs in biotechnological extraction techniques have advanced the utilization of high-value squid cartilage resources, demonstrating the material’s immense potential: For example, Leng, Wang [
4] confirmed that type II collagen derived from squid laryngeal cartilage promotes healing of osteoporotic fractures. Tan’s team [
6] used wet spinning technology to turn cartilage chitin into absorbable surgical sutures, and Zhao, Li [
7] further elucidated the efficacy of type II collagen peptides in alleviating osteoarthritis. However, these applications are limited by characteristic fishy residues, such as thiols, unsaturated aldehydes, and pyrazine compounds, which form stable complexes with collagen matrices via hydrophobic interactions and disulfide bonds [
8]. The root cause of this issue lies in the unique nature of squid cartilage extracts. Studies have confirmed their strong, characteristic fishy odor, which is primarily attributed to residual lipids and trimethylamine oxide (TMAO) degradation products. The issue of a fishy odor in aquatic collagen is particularly pronounced in cephalopod cartilage [
9], and squid by-products have a significantly stronger fishy odor than fish because they are rich in phospholipids and TMAO, which makes them harder to eliminate [
10]. Therefore, developing efficient deodorization technology is essential for converting squid cartilage into a valuable resource.
Currently, fishy flavor removal techniques for aquatic products are mainly divided into three categories: physical, chemical and biological methods [
11]. Physical methods such as activated carbon adsorption or β-cyclodextrin embedding are easy to operate and have no chemical residues, but the removal rate of bound fishy components is low, and it is easy to damage the texture of the product [
12]; chemical methods such as acid and alkali treatment or oxidant deodorization can improve the efficiency, but there is a risk of protein denaturation, flavor deterioration, and the retention of harmful by-products [
13,
14]. In comparison with conventional methodologies, the biocatalytic conversion mechanism of biotechnology exhibits distinctive advantages in the removal of fishy odors. Pan, Jia [
15] discovered that the fermentation process of
S. cerevisiae can enhance the off-flavor of pufferfish skin gel and mitigate the intensity of fishy odors. As indicated in the study by Li’s team [
12],
S. cerevisiae fermentation has been demonstrated to be an effective method for the removal of fishy odors from tilapia enzymatic hydrolysates. Ma, Liang [
16] further elucidated the effect of
L. plantarum deodorization metabolic mechanism in tuna and found that microbial fermentation produced pleasant flavor substances while removing unpleasant odors. Therefore, the bio-deodorization technique, which specifically degrades fishy precursor substances by microbial or enzymatic agents, not only has a higher deodorization rate, but also improves the flavor profile [
16,
17].
This study aims to compare the effectiveness of S. cerevisiae and L. plantarum in removing fishy odors. In this study, squid cartilage was utilized as the raw material, and was separately inoculated with S. cerevisiae and L. plantarum for fermentation. Using sensory evaluation as the standard, the fermentation process conditions (i.e., fermentation time, fermentation temperature, and inoculum size) were optimized. Subsequently, the squid cartilage was fermented using the optimal fermentation process conditions for the two strains. The volatile flavor compounds in the fermentation products were analyzed using electronic nose technology and headspace solid-phase microextraction gas chromatography-mass spectrometry (HS-SPME-GC-MS). Finally, by comparing the abundance differences in volatile flavor compounds, key fishy odor compounds were identified, and conclusions were drawn regarding the fishy odor removal effects of S. cerevisiae and L. plantarum.
2. Materials and Methods
2.1. Materials
Squid cartilage obtained from Fuzhou Hongdong Food Co., Ltd. (Fuzhou, China). The commercial baker’s yeast (S. cerevisiae) was purchased from Angel Yeast Co., Ltd. (Yichang, China). L. plantarum was obtained from China Industrial Microbial Strain Preservation and Management Centre (Beijing, China), strain no.: CICC 10345. MRS medium and MRS broth medium were purchased from Huasheng Chemical Reagent Co., Ltd. (Tianjin, China). NaCl and sucrose are both food grade and come from Fujian Salt Industry Group Co., Ltd. (Fuzhou, China) and Xiamen Gulong Food Co., Ltd. (Xiamen, China), respectively. Other chemical reagents are analytical grade or chromatographic grade.
2.2. Reactivation of S. cerevisiae and L. plantarum
Prior to inoculation for fermentation, 2%
S. cerevisiae was rehydrated in activation solution containing 4% sterilized sucrose at 37 °C for 30 min. Then, the rehydrated activation solution of
S. cerevisiae was added to the liquid medium containing 2.5% NaCl and 5% sucrose at 10% of the inoculation volume. Incubate the mixture on a shaking incubator at 180 rpm and 28 °C for 12 h to obtain activated
S. cerevisiae for later fermentation [
18]. After activation,
S. cerevisiae were collected by centrifugation (4000×
g, 10 min, 4 °C) and resuspended in sterile physiological saline (0.85% NaCl). Cell concentration was determined by measuring the optical density (OD
600) at 600 nm using a spectrophotometer, and calibrated using a standard curve of viable cell counts established by counting on YPD medium. The cell suspension was then adjusted to a final concentration of 1 × 10
8 CFU/mL using sterile physiological saline for fermentation experiments [
19]. All fermentation experiments were conducted in 250 mL Erlenmeyer Flask, each containing 100 mL of squid cartilage homogenate.
The method for reviving
L. plantarum was based on the method described in previous studies [
20]. In brief, 0.5 mL of sterile physiological saline was added to an ampoule containing dried
L. plantarum powder. The
L. plantarum solution was then transferred to sterile MRS medium. The mixture was cultured at 37 °C for 24 h to obtain the revived bacterial suspension. Take 100 μL of the revived bacterial suspension and inoculate it into 5 mL of MRS medium, incubating at 37 °C for 18 h. Finally, transfer the suspension at a 2% inoculum rate to 50 mL of MRS medium and incubate anaerobically at 37 °C for 12 h to obtain the activated
L. plantarum solution, which is used for subsequent fermentation. Activated
L. plantarum was collected by centrifugation (8000×
g, 10 min, 4 °C) and resuspended in sterile saline. The cell concentration was adjusted based on the optical density (OD
600) at 600 nm and verified by counting on MRS agar plates to obtain the standard suspension concentration of 1 × 10
9 CFU/mL required for fermentation experiments. All fermentation experiments were conducted in 250 mL Erlenmeyer Flask, each containing 100 mL of squid cartilage homogenate.
2.3. Single-Factor Experiment
Prior to statistical optimization, single-factor experiments were conducted to assess the individual effects of each variable (fermentation time, temperature, and addition amount) on deodorization effectiveness [
21]. The purpose of this preliminary study was to determine the appropriate range for each variable in subsequent response surface methodology studies.
After removing the squid meat, the squid cartilage is washed and drained. The squid cartilage was mixed with deionized water at a ratio of 1:10 (weight/volume) and homogenized for 1 min at a speed of 10,000 rpm. Add the standardized S. cerevisiae or L. plantarum cell suspension to the squid cartilage homogenate at the specified addition ratio (Note: The percentage here refers to the ratio of the volume of the standardized suspension added to 100 mL of homogenate. Sensory evaluation was used as the assessment criterion to evaluate the effects of fermentation time, fermentation temperature, and the addition ratio (volume ratio of microbial fermentation solution to squid cartilage homogenate) for each strain on the removal of fishy odor. The fermentation time for S. cerevisiae was set at 30, 60, 90, 120, and 150 min, and the fermentation temperature was set at 25, 30, 35, 40, and 45 °C. The addition ratios were set at 0.2%, 0.4%, 0.6%, 0.8%, and 1.0%. The fermentation products of S. cerevisiae were named the Y group. The fermentation time for L. plantarum was set at 30, 60, 90, 120, and 150 min, with fermentation temperatures of 25, 30, 35, 40, and 45 °C, respectively, and addition rates of 2%, 4%, 6%, 8%, and 10%, respectively. The fermentation products of L. plantarum were named the L group. The unfermented squid cartilage homogenate was named the CK group.
2.4. Response Surface Experiment
The subsequent single-factor experiment yielded the results that informed the selection of a response surface experiment. This experiment was designed using Design-Expert 13 software, version 13.0.5.0 (2021) (Stat-Ease Inc.,Minneapolis, MN, USA), which created a Box–Behnken design. The independent variables in the design were divided into three levels, coded as −1, 0, and 1, as illustrated in
Table 1 and
Table 2. The dependent variable that was the subject of measurement was the sensory score.
Table 3 and
Table 4 presents the levels of the independent variables and the design matrix. The experimental design comprised a total of 17 runs, including five replicates at the center point, and was conducted in a random order to minimize unpredictable variations. Finally, verification experiments were conducted.
2.5. Sensory Evaluation
As stated in the previous literature [
18], a group consisting of five males and five females underwent training over a two-month period to become acquainted with the odors of fishiness, floral, sweet, earthy, and fatty. The group members were randomly assigned to perform sensory evaluations of the fishiness of the fermented samples. Following each sniff, a 20-second interval was observed, during which the subject was exposed to fresh air. Each evaluator was tasked with the evaluation of each sample on three separate occasions. The intensity of the fishy odor was evaluated on a scale ranging from 0 to 5, where 0 indicated a strong fishy odor and 5 indicated an absence of fishy odor.
2.6. Electronic Nose Analysis
Electronic nose analysis was conducted referring to the methods as previously described with slight modification [
22]. The product sample (10 g) was placed within the headspace bottle, and sealed with a silica gel spacer. The bottle was left at room temperature for 2 h. Following this, the electronic nose sampling needle was inserted into the bottle, and the headspace air was extracted for analysis. The electronic nose determination parameters were as follows: a sampling time interval of 1 s, a pre-sampling time of 5 s, a self-cleaning time of 90 s, an inlet flow rate of 400 mL/min, and a sample determination time of 150 s. The data between 141 and 143 s after stabilization were selected for flavor component analysis.
Each sensor of electronic nose responds preferentially to specific organic compounds: W1C for aromatic benzene, W5S for nitrogen oxides, W3C for ammonia, W6S for hydrocarbons, W5C for short-chain alkanes, W1S for wide-chain alkanes, W1W for sulfur-inorganics, W2S for alcohols, aldehydes and ketones, W2W for aromatic compounds, W3S is for detection of long-chain alkanes.
2.7. HS-SPME-GC/MS Analysis
2.7.1. Sample Preparation and Extraction
The material was weighed post-harvest, immediately frozen in liquid nitrogen and stored at −80 °C until required. The samples were then ground to a powder in liquid nitrogen.
Thereafter, 0.2 g (0.2 mL of the powder was transferred into a 20 mL headspace vial (Agilent, Palo Alto, CA, USA) containing 0.2 g of NaCl powder to inhibit any enzymatic reaction. The vials were then sealed using a rolled-edge cap with a TFE silicone headspace septum (Agilent). Under constant temperature conditions of 60 °C, shake for 5 min, insert a 120 µm DVB/CWR/PDMS extraction head into the headspace vial of the sample, perform headspace extraction for 15 min, desorb at 250 °C for 5 min, and then perform GC-MS separation and identification. Prior to sampling, the extraction head is aged at 250 °C for 5 min in the Fiber Conditioning Station.
2.7.2. GC-MS Conditions
Following the sampling stage, the volatile organic compounds (VOCs) on the fiber coatings were desorbed at the inlet of a gas chromatograph (model 8890; Agilent) in splitless mode for a period of 5 min at a temperature of 250 °C. Identification and quantification of the VOCs was achieved through the utilization of an Agilent 8890 gas chromatograph, in conjunction with a 7000D mass spectrometer (Agilent), which was equipped with a 30 m × 0.25 mm × 0.25 μm DB-5MS (5% phenyl-polymethylsiloxane) capillary column. The carrier gas utilized was helium, with a linear velocity of 1.2 mL/min. The injector temperature was maintained at 250 °C. The oven temperature was initiated at 40 °C (3.5 min) and subsequently heated to 100 °C at a rate of 10 °C/min, 180 °C at 7 °C/min, and 280 °C at 25 °C/min for a duration of 5 min. The mass spectrum was recorded in 70 eV electron collision ionization mode. The temperatures of the quadrupole mass detector, the ion source and the transfer line were set to 150, 230 and 280 °C, respectively. The mass spectrum was subsequently utilized in selected ion monitoring (SIM) mode for the identification and quantification of the analytes. The internal standard is 3-Hexanone-2,2,4,4-d4, added at a concentration of 20 μL (10 μg/mL). The relative amount of volatile compounds in the sample (µg/g) was calculated using the following formula:
Xi is the amount of compound i in the sample to be tested (μg/mL); Vs is the volume of internal standard added (μL); Cs is the concentration of internal standard (μg/mL); V is the volume of the sample to be tested (mL); Is is the peak area of the internal standard; Ii is the peak area of compound i in the sample to be tested.
2.7.3. Temperament Data Analysis
Additionally, the volatile flavor compounds were analyzed using the MyviCloud platform (
https://cloud.metware.cn/, accessed on 26 August 2025). Unsupervised PCA (principal component analysis) was performed by the statistical function prcomp in R (
www.r-project.org, accessed on 20 July 2025). Prior to the unsupervised PCA analysis, the data were scaled by unit variance. In the context of two-group analyses, the determination of differential metabolites was conducted through the utilization of the variable importance in projection (VIP) metric, with a threshold value of 1, in conjunction with the absolute Log
2fold change (|Log
2FC| ≥ 1.0). In the context of multi-group analyses, differential metabolites were determined by VIP (VIP > 1) and
p-value (
p-value < 0.05, ANOVA). The VIP values were extracted from the OPLS-DA results using the R package MetaboAnalystR (version 4.1.2), which also contains score plots and permutation plots. Prior to the implementation of the OPLS-DA, the data underwent log-transformation (log
2) and mean centering. A permutation test (200 permutations) was performed to avoid overfitting.
2.8. ROAV Analysis
The relative odor activity value (ROAV) is a method for identifying the main flavor compounds in a food product by combining the sensory thresholds of the compounds. This method is utilized to elucidate the contribution of each flavor compound to the overall flavor profile of a given sample. Typically, an ROAV greater than 1 signifies that a compound exerts a direct influence on the flavor of a given sample [
23,
24]. The ROAV calculation of the odor compound was conducted using Equation (2):
where
ROAVi is the relative odor activity value of the odor compound
i,
Ci is the relative amount of the odor compound (μg/g or μg/mL), and
Ti is the threshold value of the odor compound (μg/g or μg/mL).
4. Conclusions
In conclusion, this study successfully determined the optimized parameters for the deodorizing fermentation of squid cartilage homogenate using S. cerevisiae and L. plantarum. The optimal fermentation conditions for S. cerevisiae were as follows: fermentation time of 105 min, temperature of 34 °C, and inoculum level of 0.85%. For L. plantarum, the optimal conditions were as follows: fermentation time of 79 min, temperature of 34.5 °C, and inoculum level of 4.5%. Electronic nose and HS-SPME-GC-MS analyses confirmed that S. cerevisiae demonstrated superior performance in eliminating key fishy odor compounds (particularly sulfur-containing compounds and aldehydes) while promoting the formation of desirable aroma compounds such as esters and ketones (e.g., carvone and δ-pentenol). Mechanistic analysis suggests that S. cerevisiae’s enhanced deodorization efficiency may stem from its multi-pathway synergistic metabolism, including enzymes such as dioxygenases and sulfide oxidases involved in aromatic compound degradation. These enzymatic reactions facilitate the conversion of malodorous substances into odorless or pleasant aromas.
This study has the following limitations: Research conducted under controlled laboratory conditions may face challenges in maintaining fermentation parameter stability when scaled up to industrial production. Furthermore, the precise enzymatic pathways and genetic regulatory mechanisms underlying the metabolic activities of S. cerevisiae and L. plantarum remain incompletely elucidated, necessitating proteomics and transcriptomics analyses. Simultaneously, the potential impact of fermentation on the final product’s texture and nutritional value requires in-depth investigation to ensure comprehensive application in food processing. Despite these limitations, this study establishes a valuable theoretical and practical foundation for the high-value utilization of squid processing by-products and offers a highly promising bio-deodorization strategy for aquatic products.