Cellular and Molecular Response of Macrophages THP-1 during Co-Culture with Inactive Trichophyton rubrum Conidia
Abstract
:1. Introduction
2. Materials and Methods
2.1. Trichophyton Rubrum Strain, Media and Growth Conditions
2.2. Human THP-1-Derived Macrophages, Media and Growth Conditions
2.3. Co-Culture Assay Conditions
2.4. Cell Viability
2.5. Cytokine Quantification
2.6. Determination of Reactive Oxygen Species
2.7. RNA Isolation and Integrity Analysis
2.8. MiSeq
2.9. Sequence Data Analysis
2.10. qRT-PCR Validation
2.11. In Silico Analysis
3. Results
3.1. Quantification of Interleukins in Co-Cultures of Trichophyton Rubrum with Human THP-1 Macrophages
3.2. Cell Viability
3.3. Evaluation of Reactive Oxygen Species Production
3.4. Differentially Expressed MicroRNAs
3.5. Validation of MicroRNAs by RT-PCR
3.6. In Silico Analysis of Significantly Modulated MicroRNAs
4. Discussion
5. Conclusions
Author Contributions
Funding
Conflicts of Interest
References
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Expression | microRNA | Log2 Fold Change | p-Value | Expression | microRNA | Log2 Fold Change | p-Value |
---|---|---|---|---|---|---|---|
Upregulated | hsa-miR-1244 | 4.58 | 0.012 | Downregulated | hsa-let-7g-5p | −0.04 | 0.017 |
hsa-miR-3202 | 4.37 | 0.006 | hsa-let-7i-5p | −0.04 | 0.010 | ||
hsa-miR-4751 | 4.28 | 0.006 | hsa-miR-148a-3p | −0.06 | 0.000 | ||
hsa-miR-23c | 4.07 | 0.018 | hsa-miR-450b-5p | −0.16 | 0.042 | ||
hsa-miR-3680-5p | 3.78 | 0.026 | hsa-miR-19a-3p | −0.29 | 0.000 | ||
hsa-miR-3129-3p | 3.77 | 0.027 | hsa-miR-10395-3p | −0.34 | 0.041 | ||
hsa-miR-153-5p | 3.72 | 0.029 | hsa-miR-582-5p | −0.37 | 0.021 | ||
hsa-miR-5696 | 3.70 | 0.029 | hsa-miR-331-3p | −0.39 | 0.000 | ||
hsa-miR-4523 | 3.43 | 0.049 | hsa-miR-210-3p | −0.51 | 0.009 | ||
hsa-miR-3691-3p | 3.42 | 0.050 | hsa-miR-195-5p | −0.52 | 0.037 | ||
hsa-miR-4507 | 3.42 | 0.050 | hsa-miR-218-5p | −0.67 | 0.050 | ||
hsa-miR-1292-5p | 2.57 | 0.019 | hsa-miR-34b-3p | −0.67 | 0.036 | ||
hsa-miR-16-1-3p | 2.37 | 0.009 | hsa-miR-3135b | −0.69 | 0.042 | ||
hsa-miR-6810-5p | 2.21 | 0.027 | hsa-miR-1246 | −0.85 | 0.033 | ||
hsa-miR-1291 | 1.62 | 0.037 | hsa-miR-96-5p | −0.86 | 0.030 | ||
hsa-miR-378h | 1.49 | 0.035 | hsa-miR-769-3p | −0.88 | 0.010 | ||
hsa-miR-4767 | 1.46 | 0.003 | hsa-miR-33b-3p | −0.89 | 0.046 | ||
hsa-miR-9901 | 1.46 | 0.018 | hsa-miR-6793-3p | −1.05 | 0.021 | ||
hsa-miR-885-5p | 1.04 | 0.032 | hsa-miR-6747-3p | −1.33 | 0.033 | ||
hsa-miR-3188 | 0.97 | 0.041 | hsa-miR-1908-3p | −1.37 | 0.006 | ||
hsa-miR-590-5p | 0.84 | 0.041 | hsa-miR-548f-3p | −1.40 | 0.000 | ||
hsa-miR-627-3p | 0.82 | 0.016 | hsa-miR-3619-3p | −1.49 | 0.033 | ||
hsa-miR-133b | 0.77 | 0.007 | hsa-miR-3187-3p | −1.58 | 0.048 | ||
hsa-miR-133a-3p | 0.74 | 0.004 | hsa-miR-4786-5p | −1.78 | 0.040 | ||
hsa-miR-212-5p | 0.69 | 0.000 | hsa-miR-3189-3p | −1.79 | 0.033 | ||
hsa-miR-1343-3p | 0.65 | 0.028 | hsa-miR-4485-3p | −2.17 | 0.000 | ||
hsa-miR-224-5p | 0.65 | 0.035 | hsa-miR-10395-5p | −2.22 | 0.000 | ||
hsa-miR-106a-5p | 0.57 | 0.044 | hsa-miR-548ai | −3.65 | 0.023 | ||
hsa-miR-193a-3p | 0.46 | 0.003 | hsa-miR-3663-3p | −3.66 | 0.019 | ||
hsa-miR-501-3p | 0.42 | 0.009 | hsa-miR-5187-3p | −3.87 | 0.024 | ||
hsa-miR-6511a-3p | 0.34 | 0.043 | hsa-miR-3682-3p | −3.90 | 0.012 | ||
hsa-miR-1976 | 0.34 | 0.044 | hsa-miR-6876-5p | −4.11 | 0.005 | ||
hsa-miR-1249-3p | 0.32 | 0.003 | hsa-miR-144-3p | −4.28 | 0.010 | ||
hsa-miR-23a-5p | 0.28 | 0.001 | |||||
hsa-miR-29b-3p | 0.27 | 0.001 | |||||
hsa-miR-100-5p | 0.26 | 0.017 | |||||
hsa-miR-124-3p | 0.26 | 0.026 | |||||
hsa-miR-181c-3p | 0.25 | 0.034 | |||||
hsa-miR-326 | 0.24 | 0.004 | |||||
hsa-miR-2116-3p | 0.24 | 0.004 | |||||
hsa-miR-1301-3p | 0.22 | 0.007 | |||||
hsa-miR-378c | 0.17 | 0.001 | |||||
hsa-miR-378d | 0.16 | 0.000 | |||||
hsa-miR-378a-3p | 0.15 | 0.000 | |||||
hsa-miR-941 | 0.14 | 0.000 | |||||
hsa-miR-221-3p | 0.11 | 0.001 | |||||
hsa-miR-30e-3p | 0.08 | 0.008 | |||||
hsa-miR-30a-3p | 0.08 | 0.007 |
miRNA | Target Genes | Pathways Involved |
---|---|---|
hsa-miR-1244 | MAPK1-CSNK1A1-ACER2-AVPR1A1-TDGF1P3-HSP90AA1-SMAD7-ABHD2-RAB10-TMEM161B-HSBP1-UQCRB-AKR1B10 | Beta cells activation; cytokine- and chemokine-mediated inflammation; integrity signaling; T cell activation; immune system; stimulus response |
hsa-miR-3202 | VAMP3-PLCG2-CACNB1-SDK1-UBE25-TRAF6-MYH2-ARRB2-SMARCD1-TNFSF15-FPR1-SESN2-HSPA6-CCL16-SXT7-NR1H2-PKM-MAG-JUNB-UBE4B-RNF185 | 5HT1, 5HT2, 5HT3, 5HT4 receptors; Beta cells activation; β1, β2 and β3 adrenergic receptors, release of corticotropin, histamine; ubiquitin; P38 MAPK; WNT; immune system; stimulus response |
hsa-miR-1291 | SPINT3-CHRNB2-ERN1-TAPBP-LIMD1- HO-1 | Stimulus response |
miRNA | Target Genes | Pathways Involved |
---|---|---|
hsa-miR-6747 | PRKX-GNB5-SYK-ITPR2-IL6R-SPIB-FOXO3-SPIC-SRF-UBE2B-TXR-HMGB1-GBP4-TLR10-SLFN13-FPR1-TLR7-BMPR1A-UGGT2-SIGLEC9-DENNDSB-GSR-PAQR7-SGTB-F2-SSR1-RBM43-FCAR-CCS-KCNMB1- | 5HT1, 5HT2, 5HT3, 5HT4 receptors; β cell activation; interleukin, corticotropin release; ubiquitin; P38 MAPK; immune system; stimulus response |
hsa-miR-3682-3p | MYLK-UBA6-TXLNG-SRRT-IL7R | Cytokine-mediated inflammation; ubiquitin; immune system; stimulus response |
hsa-miR-144-3p | CPS1-RAC1-MAP3K4-GNG12-UBE2A-FZD6-SMARCAS-SMAD4-FBXW7-ARIDIA-ARID1B-MYCN-WNT7A-MAP3K4-PTGS2-GNG12-DAB2-ACSL4-PTGS2-DENNDSB-HSPA13-YOD1-TGFB1-IRS1-LEFTY1 | Arginine biosynthesis; β cell activation; stress response; T cell activation; cytokine receptor-mediated signaling; ubiquitin; WNT; P38 MAPK; Toll receptor; MYO signaling, histamine H1 and H2; immune response; stimulus response |
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Gonzalez Segura, G.; Cantelli, B.A.; Peronni, K.; Rodrigo Sanches, P.; Komoto, T.T.; Rizzi, E.; Beleboni, R.O.; da Silva Junior, W.A.; Martinez-Rossi, N.M.; Marins, M.; et al. Cellular and Molecular Response of Macrophages THP-1 during Co-Culture with Inactive Trichophyton rubrum Conidia. J. Fungi 2020, 6, 363. https://doi.org/10.3390/jof6040363
Gonzalez Segura G, Cantelli BA, Peronni K, Rodrigo Sanches P, Komoto TT, Rizzi E, Beleboni RO, da Silva Junior WA, Martinez-Rossi NM, Marins M, et al. Cellular and Molecular Response of Macrophages THP-1 during Co-Culture with Inactive Trichophyton rubrum Conidia. Journal of Fungi. 2020; 6(4):363. https://doi.org/10.3390/jof6040363
Chicago/Turabian StyleGonzalez Segura, Gabriela, Bruna Aline Cantelli, Kamila Peronni, Pablo Rodrigo Sanches, Tatiana Takahasi Komoto, Elen Rizzi, Rene Oliveira Beleboni, Wilson Araújo da Silva Junior, Nilce Maria Martinez-Rossi, Mozart Marins, and et al. 2020. "Cellular and Molecular Response of Macrophages THP-1 during Co-Culture with Inactive Trichophyton rubrum Conidia" Journal of Fungi 6, no. 4: 363. https://doi.org/10.3390/jof6040363