Skip to Content
  • 4.3
    Impact Factor
  • 8.7
    CiteScore
  • 19 days
    Submission to First Decision
  • 3 days
    Acceptance to Publication

Journal of Fungi

Journal of Fungi is an international, peer-reviewed, open access journal of mycology published monthly online by MDPI. The Medical Mycological Society of the Americas (MMSA) and Spanish Phytopathological Society (SEF) are affiliated with the Journal of Fungi, and their members receive discounts on the article processing charges.

Get Alerted

Add your email address to receive forthcoming issues of this journal.

All Articles (6,964)

  • Article
  • Open Access

To enable the rapid and accurate acquisition of phenotypic parameters during distinctness, uniformity, and stability (DUS) testing of edible mushroom varieties, and to address the low efficiency, strong subjectivity, and insufficient standardization of conventional manual measurement methods, this study used the fruiting bodies of Oudemansiella raphanipes as the research object and proposed an automatic phenotypic parameter extraction method based on deep learning instance segmentation. An instance-segmentation dataset containing 473 O. raphanipes images and 1419 annotated objects was constructed, and the YOLOv11s-seg model was improved by introducing the lightweight feature-extraction network StarNet_s050 to construct the YOLOv11s-star-seg model, thereby improving model inference efficiency and meeting practical application requirements. Under standardized imaging conditions, pileus and stipe regions were obtained from the instance-segmentation results, and image-scale calibration was combined to automatically extract DUS phenotypic parameters, including pileus diameter, pileus context thickness, stipe length, and stipe diameter, while quantitatively describing stipe shape. The experimental results showed that the YOLOv11s-star-seg model performed well in the instance segmentation of O. raphanipes, achieving an mAP50 of 99.1%, an F1 value of 98.9%, and an mIoU of 97.86%; compared with the YOLOv11s-seg model, the number of parameters was reduced by 39% and the inference time was reduced by 27%, thereby achieving model lightweighting while maintaining high segmentation accuracy. The automatically extracted results showed high consistency with the manual measurements; the coefficients of determination (R2) from linear regression fitting for stipe length, stipe diameter, and pileus diameter all exceeded 0.96, indicating that the method can effectively replace part of the manual measurement process. The results can provide technical support for the digitalization of DUS testing of O. raphanipes, intelligent breeding of edible mushrooms, and accurate phenotypic identification.

J. Fungi

16 October 2026

Data annotation image.
  • Review
  • Open Access

A Review of Biotechnological Applications of Glomeromycota: Inoculum Production, Plant Performance, Environmental Management, and Metabolites

  • Cícero Pinheiro Inácio,
  • Greicilene Maria Rodrigues Albuquerque and
  • Rejane Pereira Neves
  • + 4 authors

Arbuscular mycorrhizal fungi (Glomeromycota) offer routes to inoculum production, crop management, phytomanagement of contaminated soils, and modulation of plant metabolites. This critical narrative review integrates 102 selected original studies, including genomic, physiological, transcriptomic, cultivation, and field research. Evidence is interpreted by fungal strain, host genotype, tissue, environment, and application-specific endpoint. Host-lipid transfer and asymbiotic propagation inform inoculum manufacture, but spore production remains distinct from infective potency, storage stability, and economic feasibility. Receptor signaling and functional nutrient-transport studies connect symbiotic establishment to resource exchange; stress experiments reveal context-dependent changes in water transport, ion homeostasis, photosynthesis, and oxidative regulation. Commercial-product variability, resident microbiota, pesticide exposure, and ecological responses constrain translation. Metal localization and transport studies distinguish retention, mobilization, and tolerance from contaminant removal. Plant-metabolite experiments demonstrate chemical modulation rather than direct fungal biosynthesis or therapeutic efficacy. Soil carbon and hydraulic responses further show that ecological benefits cannot be generalized across communities or substrates. Development should prioritize verified inocula, defined host × fungal strain × environment combinations, relevant controls, and repeatable field outcomes. The narrative design and author-proposed assessment framework covers a deployment protocol.

J. Fungi

16 October 2026

Application–mechanism–endpoint map constructed from the selected original studies. Supporting studies address inoculum production [3,4,5,21], crop performance [2,7,8,9,10,11,12,23,24,25,27], contaminated soils [13,14,15], and plant metabolites [16,17,18,19,20]. M denotes mechanistic evidence, C controlled proof of concept, and F field observations; these categories describe study setting and scope, not a formal risk-of-bias grade. The figure does not pool effect sizes or imply equivalent support across domains.
  • Article
  • Open Access

Background: Mucormycosis is a rapidly progressive and often fatal invasive fungal infection caused by moulds in the order, Mucorales. Early diagnosis is essential for effective clinical management; however, conventional diagnostic approaches such as culture and histopathology are slow, insensitive, and require specialist mycological expertise. Although molecular methods are available for disease detection, they are not widely accessible. At present, no enzyme immunoassay (EIA) exists for the detection of mucormycosis. Methods: A murine IgG1 monoclonal antibody (mAb), FH12, was generated against extracellular polysaccharides (EPSs) produced by Mucorales pathogens during active growth. The antibody was characterised for specificity, epitope stability, and antigen localisation using ELISA, immunoblotting, and immunofluorescence techniques. The mAb was incorporated into a sandwich ELISA and evaluated using culture filtrates, purified EPSs spiked into human serum, and tissue homogenates from a patient with cutaneous mucormycosis caused by Lichtheimia ramosa. Results: mAb FH12 demonstrated pan-Mucorales specificity and no cross-reactivity with other clinically relevant yeasts and moulds. The epitope recognised by FH12 is periodate-insensitive and moderately heat-stable. The sandwich ELISA detected EPS antigens in human serum with limits of detection ranging from pg/mL to low ng/mL levels, and successfully identified the EPS biomarker in patient tissue homogenates. Conclusion: The FH12-based sandwich ELISA shows high sensitivity and specificity, and has the potential to be used as a laboratory-based adjunct diagnostic test for the detection of mucormycosis in humans.

J. Fungi

15 October 2026

(A) Diseases caused by Mucorales fungi. The predominant disease in humans is rhino–orbital–cerebral mucormycosis (ROCM) involving the nose, eye and brain, and is typically reported in the settings of poorly controlled diabetes and haematological malignancy. A surge of ROCM was reported during the second wave of the coronavirus pandemic, especially in diabetic patients and/or those receiving corticosteroids for COVID-19 infection. Pulmonary mucormycosis is most commonly seen in haematological malignancy and transplant patients, and is related to desferrioxamine therapy with renal impairment. Cutaneous (skin and soft tissue) mucormycosis can occur in burn wounds, and following contaminated traumatic injury, including tornado-type and combat-related injuries. Less common manifestations include gastro-intestinal and disseminated mucormycosis. (B) Sandwich ELISA protocol. Step 1: Wells of microtiter plates coated with 50 μL of protein A-purified mAb FH12 (4 μg/mL) are blocked for 15 min with 100 μL of PBS containing 1.0% (w/v) BSA, and then incubated at 23 °C for 1 h with 50 µL of antigen solution. Step 2: After washing, the wells are incubated for 50 min at 23 °C with FH12-HRP conjugate diluted 1 in 10,000 (v/v) in PBST containing 0.25% (w/v) BSA. Step 3: After washing, the wells are incubated with substrate solution for 15 min and the absorbance values determined at 450 nm. (C) Procedure for heat treatment of human serum. Step 1: Human serum is mixed 1:2 (v/v) with PBS buffer containing Na2EDTA, and then heated for 3 min at 100 °C in a boiling water bath. Step 2: The heated serum is centrifuged at 16,000× g for 5 min to pellet insoluble serum proteins. Step 3: Following centrifugation, the clear supernatant is mixed 1:1 (v/v) with running buffer (RB) and 50 μL assayed by sandwich ELISA. Figure 1 was created with BioRender.com.
  • Article
  • Open Access

A comprehensive virulence survey of Puccinia triticina collections was conducted in 2025 across four regions of Asian Russia and northern Kazakhstan to analyze the extent of differentiation among the regional pathogen populations. Leaves with uredinia were collected on a standardized set of spring wheat genotypes from the Kazakhstan–Siberia Network (KASIB-26). A total of 195 single-pustule isolates (34 from Chelyabinsk, 24 from Kurgan, 52 from Tyumen, 43 from Omsk, and 42 from northern Kazakhstan) were tested for the infection type on the standard set of twenty Thatcher near-isogenic wheat lines. None of the 20 Lr-genes represented in the differential lines proved to be highly effective. New virulences to Lr24 and to the gene combination Lr9 + Lr26 were first revealed in the studied area. In total, 22 races were identified. Two races were identified across all five regions, one in three regions, and four in two regions. Alongside traditional races in the northwesternmost wheat-growing territories in Asia, new races with previously absent virulences were detected in 2025. Distinct pathogen groups were identified within the Omsk and Tyumen regions, and a highly unique race was found in Kazakhstan. Nevertheless, the overall population structure remained stable during the last decade, with a predominant combination of highly virulent races persisting across the whole territory.

J. Fungi

15 October 2026

Collection sites of P. triticina in Russia and Kazakhstan.

Highly Accessed Articles

News & Conferences

Latest Issues

Open for Submission

Journal Sections

Plant Pathogens and Mycotoxins
Reprint

Plant Pathogens and Mycotoxins

Editors: Martín Gustavo Theumer, José Sebastián Dambolena
XFacebookLinkedIn
J. Fungi - ISSN 2309-608X