A New Record and Three Redescriptions of Rissoinidae from China’s Hainan Island, with the First Presentation of Two Mitochondrial Genomes in the Family Rissoinidae
Abstract
:1. Introduction
2. Materials and Methods
2.1. Taxon Sampling and Processing
2.2. Sequencing, Assembly, and Annotation
2.3. Phylogenetic and Genetic Divergence Analysis
3. Results and Discussion
3.1. Systematics
3.2. Mitogenome Architecture Genome
3.3. Phylogenetic and Genetic Diversity Analysis
4. Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Family | Species | Genbank |
---|---|---|
Rissoinidae | Phosinella seguenziana (Issel, 1869) | PQ767087 |
Rissoina ambigua (A. Gould, 1849) | MW277843 | |
Rissoina cardinalis Brazier, 1877 | PQ767088 | |
Rissoina sp._PNG1679 | MZ539691 | |
Rissoina sp._USNM_1466845 | MZ559526 | |
Pandalosia subulata Laseron, 1956 | AB930474 | |
Stosicia annulata (Dunker, 1860) | AB930480 | |
Barleeiidae | Ansola angustata (Pilsbry, 1901) | AB930479 |
Genes or Regions | Size | Nucleotide Composition | A + T | AT Skew | GC Skew | |||
---|---|---|---|---|---|---|---|---|
T | C | A | G | (%) | ||||
Complete mitogenome | 17,321 | 39.26 | 12.34 | 26.63 | 21.76 | 65.89 | −0.19 | 0.27 |
PCGs | 11,310 | 40.91 | 13.48 | 22.81 | 22.79 | 63.72 | −0.28 | 0.25 |
tRNA genes | 1541 | 34.52 | 13.82 | 32.64 | 19.01 | 67.16 | −0.03 | 0.16 |
rRNA genes | 2761 | 34.77 | 10.54 | 34.08 | 20.61 | 68.85 | −0.01 | 0.32 |
lrRNA | 1562 | 35.85 | 10.50 | 32.71 | 20.93 | 68.56 | −0.05 | 0.33 |
SrRNA | 1199 | 33.36 | 10.59 | 35.86 | 20.18 | 69.22 | 0.04 | 0.31 |
A + T-rich region | 605 | 40.56 | 6.71 | 38.38 | 14.35 | 78.94 | −0.03 | 0.36 |
Genes or Regions | Size | Nucleotide Composition | A + T | AT Skew | GC Skew | |||
---|---|---|---|---|---|---|---|---|
T | C | A | G | (%) | ||||
Complete mitogenome | 17,221 | 37.88 | 12.89 | 27.25 | 21.98 | 65.13 | −0.16 | 0.26 |
PCGs | 11,403 | 40.26 | 13.83 | 23.31 | 22.6 | 63.57 | −0.27 | 0.24 |
tRNA genes | 1545 | 33.01 | 14.37 | 33.33 | 19.29 | 66.34 | 0.005 | 0.15 |
rRNA genes | 2770 | 33.03 | 11.19 | 34.04 | 21.73 | 67.07 | 0.015 | 0.32 |
lrRNA | 1635 | 34.37 | 10.64 | 34.25 | 20.73 | 67.62 | −0.002 | 0.32 |
SrRNA | 1135 | 31.10 | 11.98 | 33.74 | 23.17 | 64.84 | 0.04 | 0.32 |
A + T-rich region | 666 | 34.49 | 8.7 | 38.99 | 17.83 | 73.48 | 0.06 | 0.34 |
Gene | Direction | Position | Size | Intergenic | Condon | Anti-Codon | ||
---|---|---|---|---|---|---|---|---|
From | TO | Nucleotides | Start | Stop | ||||
cox1 | F | 1 | 1536 | 1536 | — | ATG | TAG | — |
cox2 | F | 1552 | 2238 | 687 | 15 | ATG | — | TTT |
atp8 | F | 2330 | 2485 | 156 | 91 | ATG | — | TGG |
trnD | F | 2533 | 2604 | 72 | 47 | — | — | TCG |
atp6 | F | 2618 | 3313 | 696 | 13 | ATG | — | GTT |
trnG | R | 3420 | 3490 | 71 | 106 | — | — | GAT |
trnQ | R | 3527 | 3604 | 78 | 36 | — | TAG | — |
trnC | R | 3620 | 3685 | 66 | 15 | — | — | GCT |
trnW | R | 3707 | 3776 | 70 | 21 | — | TAG | — |
trnY | R | 3812 | 3879 | 68 | 35 | — | TAG | — |
trnM | R | 3932 | 4004 | 73 | 52 | — | TAA | — |
trnE | R | 4009 | 4076 | 68 | 4 | — | TAG | — |
rrnS | F | 4077 | 5275 | 1199 | 0 | — | — | GTC |
trnV | F | 5276 | 5344 | 69 | 0 | — | TAG | — |
rrnL | F | 5345 | 6906 | 1562 | 0 | — | — | TCC |
trnL2 | F | 6907 | 6976 | 70 | 0 | — | — | TTG |
trnL1 | F | 7008 | 7075 | 68 | 31 | — | — | GCA |
nad1 | F | 7076 | 8020 | 945 | 0 | ATG | — | TCA |
trnP | F | 8108 | 8175 | 68 | 87 | — | — | GTA |
nad6 | F | 8179 | 8697 | 519 | 3 | ATG | — | CAT |
cob | F | 8752 | 9891 | 1140 | 54 | ATG | — | TTC |
trnS2 | F | 9894 | 9960 | 67 | 2 | — | — | — |
trnF | F | 9976 | 10045 | 70 | 15 | — | — | TAC |
trnT | R | 10084 | 10152 | 69 | 38 | — | — | — |
nad4l | F | 10220 | 10498 | 279 | 67 | ATG | — | TAA |
nad4 | F | 10507 | 11877 | 1371 | 8 | ATA | — | TAG |
trnH | F | 11958 | 12025 | 68 | 80 | — | TAA | — |
nad5 | F | 12027 | 13745 | 1719 | 1 | ATG | — | TGG |
cox3 | F | 14351 | 15133 | 783 | 605 | ATG | TAA | — |
trnK | F | 15191 | 15260 | 70 | 57 | — | TAG | — |
trnA | F | 15290 | 15357 | 68 | 29 | — | — | TGA |
trnR | F | 15416 | 15493 | 78 | 58 | — | — | GAA |
trnN | F | 15540 | 15608 | 69 | 46 | — | — | TGT |
trnI | F | 15620 | 15690 | 71 | 11 | — | TAA | — |
nad3 | F | 15716 | 16045 | 330 | 25 | ATG | TAG | — |
trns1 | F | 16063 | 16132 | 70 | 17 | — | — | GTG |
nad2 | F | 16136 | 17284 | 1149 | 3 | ATG | TAA | — |
Gene | Direction | Position | Size | Intergenic | Condon | Anti-Codon | ||
---|---|---|---|---|---|---|---|---|
From | To | Nucleotides | Start | Stop | ||||
cox1 | F | 1 | 1554 | 1554 | — | ATG | 883 | — |
cox2 | F | 1588 | 2277 | 690 | 33 | ATG | — | TTT |
atp8 | F | 2364 | 2519 | 156 | 86 | ATG | — | TGG |
trnD | F | 2545 | 2616 | 72 | 25 | — | — | TCG |
atp6 | F | 2659 | 3393 | 735 | 40 | ATG | — | GTT |
trnY | R | 3460 | 3526 | 67 | 66 | — | — | GAT |
trnC | R | 3528 | 3598 | 71 | 1 | — | TAA | — |
trnW | R | 3616 | 3687 | 72 | 17 | — | — | GCT |
trnQ | R | 3716 | 3781 | 66 | 28 | — | TAA | — |
trnG | R | 3838 | 3906 | 69 | 56 | — | TAA | — |
trnM | R | 3948 | 4016 | 69 | 41 | — | TAG | — |
trnE | R | 4032 | 4102 | 71 | 15 | — | TAA | — |
rrnS | F | 4103 | 5237 | 1135 | 0 | — | — | GTC |
trnV | F | 5238 | 5307 | 70 | 0 | — | TAG | — |
rrnL | F | 5308 | 6942 | 1635 | 0 | — | — | GTA |
trnL2 | F | 6943 | 7020 | 78 | 0 | — | — | GCA |
trnL1 | F | 7120 | 7185 | 66 | 99 | — | — | TCA |
nad1 | F | 7190 | 8134 | 945 | 4 | ATG | — | TTG |
trnP | F | 8177 | 8247 | 71 | 42 | — | — | TCC |
nad6 | F | 8256 | 8768 | 513 | 8 | ATG | — | CAT |
cob | F | 8791 | 9930 | 1140 | 22 | ATG | — | TTC |
trnS2 | F | 9930 | 9995 | 66 | −1 | — | — | — |
trnF | F | 10002 | 10084 | 83 | 6 | — | — | TAC |
trnT | R | 10090 | 10153 | 64 | 5 | — | — | — |
nad4l | F | 10189 | 10479 | 291 | 35 | ATG | — | TAA |
nad4 | F | 10482 | 11855 | 1374 | 2 | TTA | — | TAG |
trnH | F | 11866 | 11932 | 67 | 10 | — | TAA | — |
nad5 | F | 11936 | 13663 | 1728 | 3 | ATG | — | TGG |
cox3 | F | 14330 | 15133 | 804 | 666 | ATA | TAA | — |
trnK | F | 15183 | 15258 | 76 | 49 | — | TAA | — |
trnA | F | 15266 | 15332 | 67 | 7 | — | — | TGA |
trnR | F | 15344 | 15414 | 71 | 11 | — | — | GAA |
trnN | F | 15428 | 15495 | 68 | 13 | — | — | TGT |
trnI | F | 15515 | 15585 | 71 | 19 | — | TAG | — |
nad3 | F | 15589 | 15942 | 354 | 3 | ATG | TAA | — |
trns1 | F | 15959 | 16028 | 70 | 16 | — | — | GTG |
nad2 | F | 16064 | 17182 | 1119 | 35 | ATA | TAA | — |
Species | 1 | 2 | 3 | 4 | 5 | 6 |
---|---|---|---|---|---|---|
Phosinella seguenziana | - | |||||
Rissoina ambigua | 16.1 | - | ||||
Rissoina cardinalis | 21.5 | 19.7 | - | |||
Rissoina sp._PNG1679 | 17.7 | 17.2 | 22.8 | - | ||
Rissoina sp._USNM_1466845 | 17.2 | 16.9 | 22.9 | 2.9 | - | |
Pandalosia subulata | 32.1 | 31.0 | 33.4 | 30.4 | 31.5 | - |
Stosicia annulata | 28.1 | 25.6 | 29.7 | 28.8 | 27.7 | 29.9 |
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Qi, L.; Kong, L.; Ma, Z. A New Record and Three Redescriptions of Rissoinidae from China’s Hainan Island, with the First Presentation of Two Mitochondrial Genomes in the Family Rissoinidae. Fishes 2025, 10, 191. https://doi.org/10.3390/fishes10050191
Qi L, Kong L, Ma Z. A New Record and Three Redescriptions of Rissoinidae from China’s Hainan Island, with the First Presentation of Two Mitochondrial Genomes in the Family Rissoinidae. Fishes. 2025; 10(5):191. https://doi.org/10.3390/fishes10050191
Chicago/Turabian StyleQi, Lu, Lingfeng Kong, and Zhenhua Ma. 2025. "A New Record and Three Redescriptions of Rissoinidae from China’s Hainan Island, with the First Presentation of Two Mitochondrial Genomes in the Family Rissoinidae" Fishes 10, no. 5: 191. https://doi.org/10.3390/fishes10050191
APA StyleQi, L., Kong, L., & Ma, Z. (2025). A New Record and Three Redescriptions of Rissoinidae from China’s Hainan Island, with the First Presentation of Two Mitochondrial Genomes in the Family Rissoinidae. Fishes, 10(5), 191. https://doi.org/10.3390/fishes10050191