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Abstract

Untargeted Proteomics Approach to Study Congenital Hearing Loss Cases †

by
Lucky Thakkar
1,
Manjunath Dandinarasaiah
2 and
Suresh B. Arakera
1,*
1
Molecular Medicine and Microbial Genetics Laboratory, Department of Applied Genetics, Karnatak University, Dharwad 580003, India
2
Department of ENT, Karnataka Institute of Medical Sciences, Vidya Nagar, Hubballi 580002, India
*
Author to whom correspondence should be addressed.
Presented at the 3rd International Electronic Conference on Biomolecules, 23–25 April 2024; Available online: https://sciforum.net/event/IECBM2024.
Proceedings 2024, 103(1), 79; https://doi.org/10.3390/proceedings2024103079
Published: 12 April 2024
(This article belongs to the Proceedings of The 3rd International Electronic Conference on Biomolecules)
Introduction: Congenital Hearing Loss (CHL) is considered the most prevalent chronic condition among children. Biomarker studies of CHL are the need of the hour for the early diagnosis of the disease. Among the biomarkers of hearing loss, extracellular biomarkers of ear disorders are considered potential diagnostic tools. Protein biomarkers are considered crucial in early-stage diagnosis of CHL cases. Methods: A total of 72 samples were collected and grouped into an Experimental (n = 36) and Control (n = 36) group. This study was approved by the Institutional Ethics Committee of Karnataka Institute of Medical Sciences, Hubballi, India. After obtaining informed consent from the participants, 5 mL blood samples were collected and serum samples were separated by centrifugation at 4000 rpm for 5 min and stored at 80 °C until further analysis. Pooled samples were processed for reduction, alkylation, and trypsin digestion before undergoing Liquid Chromatography Mass Spectrometry-Quadrupole Time of Flight (LCMS Q-TOF) analysis. Mascot search analysis was performed to identify peptide sequences and STRING software was used for network analysis of selected proteins. Results: Significant proteins were identified among the study subjects. These comprised Guanine nucleotide protein, Glutamate receptor ionotropic protein, Complement C3, Putative transmembrane protein, Zinc finger protein, Alpha 2 glycoprotein, E3 ubiquitin protein, Cadherin, Alpha Tectorin, Myosin, etc. All these proteins are associated with Congenital Hearing Loss and are involved in the mechano-transduction of soundwaves inside the cochlea. Conclusions: In this study, proteins associated with CHL have been identified among human subjects. The validation of these protein markers in serum samples using ELISA test will confirm the findings. Our panel of protein biomarkers may help in studying the underlying causes of the disease, which may direct us to its early diagnosis.

Author Contributions

Conceptualization, L.T. and S.B.A.; methodology, L.T. and M.D.; software, L.T.; validation, L.T., S.B.A. and M.D.; formal analysis, L.T.; investigation, S.B.A.; resources, M.D.; data curation, L.T.; writing, L.T. and S.B.A.; visualization, S.B.A.; supervision, M.D. and S.B.A.; project administration, S.B.A. All authors have read and agreed to the published version of the manuscript.

Funding

This research received no external funding.

Institutional Review Board Statement

The study was conducted in accordance with the Declaration of Helsinki, and approved by the Ethics Committee of Karnataka Institute of Medical Sciences, Hubballi, Karnataka (Ref No. KIMS: ETHCS COMM: 35/2022-23 dt. 11 August 2022) for studies involving humans.

Informed Consent Statement

Informed consent was obtained from all subjects or their parents involved in the study. Written informed consent has been obtained from the subjects/parents to publish this paper.

Data Availability Statement

All the data associated with the article were presented at the conference. The raw data supporting the conclusions of this article will be made available by the authors on request.

Conflicts of Interest

The authors declare no conflict of interest.
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Share and Cite

MDPI and ACS Style

Thakkar, L.; Dandinarasaiah, M.; Arakera, S.B. Untargeted Proteomics Approach to Study Congenital Hearing Loss Cases. Proceedings 2024, 103, 79. https://doi.org/10.3390/proceedings2024103079

AMA Style

Thakkar L, Dandinarasaiah M, Arakera SB. Untargeted Proteomics Approach to Study Congenital Hearing Loss Cases. Proceedings. 2024; 103(1):79. https://doi.org/10.3390/proceedings2024103079

Chicago/Turabian Style

Thakkar, Lucky, Manjunath Dandinarasaiah, and Suresh B. Arakera. 2024. "Untargeted Proteomics Approach to Study Congenital Hearing Loss Cases" Proceedings 103, no. 1: 79. https://doi.org/10.3390/proceedings2024103079

APA Style

Thakkar, L., Dandinarasaiah, M., & Arakera, S. B. (2024). Untargeted Proteomics Approach to Study Congenital Hearing Loss Cases. Proceedings, 103(1), 79. https://doi.org/10.3390/proceedings2024103079

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