Identification of QTLs for Morpho-Physiological Traits under Saline Stress in Indica MAGIC Rice Population †
Abstract
:1. Introduction
2. Material and Methods
3. Results and Discussion
4. Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Sr. No | Trait | QTL | Chromosome | Position | p Value | LOD | Locus ID | Gene Annotation |
---|---|---|---|---|---|---|---|---|
1 | Shoot length | Sal_SL 7.1 | 7 | 28443952 | 2.096 × 10−6 | 5.68 | LOC_Os07g47560 | Expressed protein |
2 | Root length | Sal_RL 1.1 | 1 | 32773208 | 2.647 × 10−6 | 5.58 | LOC_Os01g56790 | Expressed protein |
3 | Sal_RL 3.1 | 3 | 6323650 | 1.206 × 10−5 | 4.92 | LOC_Os03g12050 | Expressed protein | |
4 | Sal_RL 6.1 | 6 | 29408939 | 8.851 × 10−8 | 7.05 | LOC_Os06g48610 | CCT motif protein | |
5 | Sal_RL 8.1 | 8 | 1122340 | 6.223 × 10−5 | 4.21 | LOC_Os08g02690 | MA3 domain | |
6 | Sal_RL 12.1 | 12 | 7176380 | 2.351 × 10−6 | 5.63 | LOC_Os12g12950 | Expressed protein | |
7 | Na+ | Sal_Na 1.1 | 1 | 954124 | 1.509 × 10−5 | 4.82 | LOC_Os01g02750 | LRk-type protein |
8 | K+ | Sal_K 6.1 | 6 | 1590002 | 1.548 × 10−5 | 4.81 | LOC_Os06g03940 | Spastin, putative |
9 | Ca2+ | Sal_Ca 5.1 | 5 | 4870881 | 9.084 × 10−5 | 4.04 | ||
10 | 5 | 4877897 | 9.084 × 10−5 | 4.04 | LOC_Os05g08840 | DnaK family protein | ||
11 | 5 | 4878113 | 9.084 × 10−5 | 4.04 | ||||
12 | 5 | 4878119 | 9.084 × 10−5 | 4.04 | ||||
13 | 5 | 4878122 | 9.084 × 10−5 | 4.04 | ||||
14 | Mg2+ | Sal_Mg 2.1 | 2 | 3204128 | 1.407 × 10−6 | 5.85 | LOC_Os02g06410 | CBS domain |
15 | K+/Na+ | Sal_K/Na 1.1 | 1 | 11703845 | 2.617 × 10−6 | 5.58 | LOC_Os01g20950 | Sulfotransferase domain |
16 | Sal_K/Na 4.1 | 4 | 24365577 | 9.658 × 10−5 | 4.02 | |||
17 | 4 | 24387802 | 9.658 × 10−5 | 4.02 | ||||
18 | 4 | 24408803 | 9.658 × 10−5 | 4.02 | ||||
19 | 4 | 24415765 | 4.248 × 10−5 | 4.37 | ||||
20 | 4 | 24454895 | 8.873 × 10−5 | 4.05 | ||||
21 | 4 | 24466526 | 8.873 × 10−5 | 4.05 | LOC_Os04g41229 | bHLH domain | ||
22 | 4 | 24471326 | 8.873 × 10−5 | 4.05 | ||||
23 | 4 | 24471339 | 8.873 × 10−5 | 4.05 | ||||
24 | 4 | 24497553 | 8.873 × 10−5 | 4.05 | ||||
25 | Sal_K/Na5.1 | 5 | 1480306 | 4.36 × 10−6 | 5.36 | LOC_Os05g03500 | Expressed protein | |
26 | Sal_K/Na 7.1 | 7 | 21655201 | 5.235 × 10−6 | 5.28 | LOC_Os07g36230 | BTB domain | |
27 | Sal_K/Na 10.1 | 10 | 23089194 | 3.406 × 10−6 | 5.47 | LOC_Os10g42820 | Early-responsive dehydration protein |
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Lokeshkumar, B.M.; Krishnamurthy, S.L.; Rathor, S.; Warraich, A.S.; Yadav, S.; Sharma, P.C.; Singh, R.K. Identification of QTLs for Morpho-Physiological Traits under Saline Stress in Indica MAGIC Rice Population. Environ. Sci. Proc. 2022, 16, 29. https://doi.org/10.3390/environsciproc2022016029
Lokeshkumar BM, Krishnamurthy SL, Rathor S, Warraich AS, Yadav S, Sharma PC, Singh RK. Identification of QTLs for Morpho-Physiological Traits under Saline Stress in Indica MAGIC Rice Population. Environmental Sciences Proceedings. 2022; 16(1):29. https://doi.org/10.3390/environsciproc2022016029
Chicago/Turabian StyleLokeshkumar, Bayragondlu M., Saraswathipura L. Krishnamurthy, Suman Rathor, Arvinder S. Warraich, Satyendra Yadav, Parbodh C. Sharma, and Rakesh Kumar Singh. 2022. "Identification of QTLs for Morpho-Physiological Traits under Saline Stress in Indica MAGIC Rice Population" Environmental Sciences Proceedings 16, no. 1: 29. https://doi.org/10.3390/environsciproc2022016029