Search Results (204)

This study presents the first application of a deep-towed transmitter–receiver marine controlled-source electromagnetic (TTR-MCSEM) system for gas hydrate exploration in the Shenhu area of the South China Sea. High-resolution electromagnetic data were acquired along a 13 km transect using dynamic source–receiver offsets and a 500 A transmitter. The results reveal the following: (1) unprecedented near-seafloor resolution (20~100 m) for the precise delineation of hydrate-bearing caprock, surpassing conventional ocean-bottom electromagnetic systems; (2) laterally continuous high-resistivity anomalies (~10 Ω·m) extending from the base of the gas hydrate stability zone to the seafloor, which correlate with seismic bottom-simulating reflector (BSR) distributions and suggest heterogeneous hydrate saturation; and (3) fault-controlled fluid migration pathways that supply hydrate reservoirs and lead to seabed methane seepage at structural highs. Through 2D inversion, we show that the inverted resistivity values (~10 Ω·m) are slightly higher than those obtained from resistivity logs (~5 Ω·m). Saturation values derived from inverted resistivity exhibit remarkable consistency with well-log-based measurements. The high efficiency of the system confirms its potential for the transformative quantitative assessment of hydrate systems, seafloor massive sulfides, and marine geohazards. Full article

As a continuation of Schneider et al., Atoms 2022 10, 26, we report recent progress in the development and deployment of the interface between the computational codes B-Spline R-matrix (BSR) and R-Matrix with Time dependence (RMT). These advances have been achieved within the context of the $LS$-coupling scheme. In its current state, the interface handles atomic target states described by single configurations and supports the Fano–Racah phase convention, as required by RMT. As first example of an application, we use the interface to investigate multiphoton single ionization of helium exposed to a linearly polarized laser field with wavelengths between 280 and 316 nm and a peak intensity of $3\times {10}^{14}$ W/cm². As a second example, we consider high-order harmonic generation (HHG) in carbon, driven by an intense 30-cycle laser field at 800 nm and a peak intensity of $1\times {10}^{12}$ W/cm². Full article

Morkhor 60-3 is an upland rice variety primarily cultivated in northeastern Thailand. This glutinous rice is valued for its adaptability and rich aroma but remains susceptible to significant diseases, particularly blast and bacterial blight. Using resistant varieties represents the most cost-effective approach to address this limitation. This study incorporated the QTLs/genetic markers qBl1, qBl2, and xa5 from Morkhor 60-1 through marker-assisted backcrossing. From the BC₁F₃ population, ten lines were selected based on their parentage and evaluated for blast resistance using a spray inoculation method with 12 isolates of Pyricularia oryzae, and for bacterial blight (BB) resistance using a leaf-clipping method with nine isolates of Xanthomonas oryzae pv. oryzae. Broad-spectrum resistance (BSR) was also assessed in the lines for both diseases. Subsequently, BC₁F₄ lines were evaluated for field performance, including agronomic traits and aroma. Results identified three superior lines, BC₁F₄ 22-7-140-4, BC₁F₄ 22-7-322-5, and BC₁F₄ 22-7-311-9, that demonstrated resistance to both BB and blast pathogens with average BSR values of 0.61 and 1.00, 0.66 and 1.00, and 0.55 and 0.87, respectively. These lines also exhibited enhanced performance in flowering date, plant height, panicle number per plant, grain number per plant, and grain weight. These findings demonstrate the effectiveness of marker-assisted selection (MAS) for gene pyramiding in rice improvement. Full article

This study critically examines the early Cretaceous carbonate-hosted Zn-Pb (±Ba±Cu) deposits of the Malayer-Esfahan (MEMB) and Yazd-Anarak (YAMB) metallogenic belts in Iran, which have been inaccurately classified as Mississippi Valley type (MVT) deposits by Nejadhadad et al. (2025). Our findings reveal significant differences in mineralogy, fluid inclusion characteristics, and geochemical signatures compared to typical MVT deposits. These deposits are more akin to Irish-type Zn-Pb mineralization and formed in extensional and passive margin environments around the Nain–Baft back-arc basin. The normal faults in this back-arc rift can transform significantly during inversion and compressional tectonics, reactivating to behave as reverse faults and leading to new geological structures and landscapes. Our study highlights barite replacement as a crucial factor in forming sediment-hosted Zn-Pb (±Ba±Cu) and barite-sulfide deposits. Based on textural evidence, fluid inclusion data, and sulfur isotope analyses, we propose that barite plays a fundamental role in controlling subsequent Zn-Pb (±Ba±Cu) mineralization by serving as both a favorable host and a significant sulfur source. Furthermore, diagenetic barite may act as a precursor to diverse types of sediment-hosted Zn-Pb (±Ba±Cu) mineralization, refining genetic models for these deposits. Sulfur isotope analyses of Irish-type deposits show a broad δ³⁴S range (−28‰ to +5‰), indicative of bacterial sulfate reduction (BSR). Nevertheless, more positive δ³⁴S values (+1‰ to +36‰) and textural evidence in shale-hosted massive sulfide (SHMS) deposits suggest a greater role for thermochemical sulfate reduction (TSR) in sulfide mineralization. Full article

The bottom-simulating reflector (BSR) serves as an important seismic indicator for identifying gas hydrate-bearing sediments. This review synthesizes global BSR observations and demonstrates that spatial relationships among BSRs, free gas, and gas hydrates frequently deviate from one-to-one correspondence. Moreover, our analysis reveals that more than 35% of global BSRs occur shallower than the bases of gas hydrate stability zones, especially in deepwater regions, suggesting that the BSRs more accurately represent the interface between the gas hydrate occurrence zone and the underlying free gas zone. BSR morphology is influenced by geological settings, sediment properties, and seismic acquisition parameters. We find that ~70–80% of BSRs occur in fine-grained, grain-displacive sediments with hydrate lenses/nodules, while coarse-grained pore-filling sediments host <20%. BSR interpretation remains challenging due to limitations in traditional P-wave seismic profiles and conventional amplitude versus offset (AVO) analysis, which hinder accurate fluid identification. To address these gaps, future research should focus on frequency-dependent AVO inversion based on viscoelastic theory, multicomponent full-waveform inversion, improved anisotropy assessment, and quantitative links between rock microstructure and elastic properties. These innovations will shift BSR research from static feature mapping to dynamic process analysis, enhancing hydrate detection and our understanding of hydrate–environment interactions. Full article

A combination of microstructural, fluid inclusion, and in situ sulfur isotopic analyses of pyrite, along with major and trace element studies of the mineralization-hosting sandstone, reveals the complexity of its genesis from the Jurassic Toutunhe Formation in the Liuhuanggou sandstone-hosted uranium deposit, Southern Junggar Basin. Based on field geological investigations and the geochemical characteristics, it is concluded that the source of the ore-bearing sandstones originates from felsic igneous rocks in the Northern Tianshan and Central Tianshan regions. Through optical microscopy and scanning electron microscopy (SEM), three generations of pyrite were identified: framboidal pyrite, concentric overgrown pyrite, and sub-idiomorphic to idiomorphic cement pyrite. The sulfur isotopes of the pyrite were analyzed using laser ablation multi-collector inductively coupled plasma mass spectrometry (LA-MC-ICP-MS). The results indicate that each type of pyrite has distinct sulfur isotope compositions (the framboidal pyrite: −16.85‰ to +2.16‰, the concentric overgrown pyrite: −7.86‰ to +10.32‰, the sub-idiomorphic to idiomorphic cement pyrite: +9.16‰ to +16.77‰). The framboidal pyrite and the sub-idiomorphic to idiomorphic cement pyrite were formed through bacterial sulfate reduction (BSR), while the concentric overgrown pyrite was formed through thermochemical sulfate reduction (TSR) triggered by the upward migration of hydrocarbons. The discovery of hydrocarbon inclusions provides evidence for the involvement of deep-seated reducing fluids in uranium mineralization. Uranium mineralization occurred in two distinct stages: (1) The early stage involved the interaction of uranium-bearing fluids with reductants in the mineralization-hosting strata under the influence of groundwater dynamics, leading to initial uranium enrichment. (2) The later stage involved the upward migration of deep-seated hydrocarbons along faults, which enhanced the reducing capacity of the sandstone and resulted in further uranium enrichment and mineralization. Full article

The enrichment of organic matter in marine shale is a complex process involving tectonic–sedimentary interactions. The tectonic setting exerts critical control over sediment provenance, marine biota, and subaqueous environmental conditions in shale deposition. To unravel the mechanisms and differential controls of organic matter accumulation in marine shales across distinct tectonic regimes, this study systematically examines the Lower Cambrian Niutitang Formation and Lower Silurian Longmaxi Formation shales in the Upper Yangtze Block, SW China. Through comprehensive geochemical analyses encompassing total organic carbon (TOC) contents, as well as major and trace elements conducted on 31 shale samples from the Niutitang Formation and 30 samples from the Longmaxi Formation, we characterized their depositional environmental features and compared the distinctions between them. The results indicate that both the Cambrian Niutitang Formation and Silurian Longmaxi Formation shales exhibit high TOC contents, which range from 1.04% to 8.83% (average 4.73%) and from 0.29% to 6.14% (average 3.35%), respectively. Paleoenvironmental proxies demonstrate that the Cambrian Niutitang shales developed under suboxic–anoxic to even sulfidic conditions, with moderate water restriction and high paleoproductivity levels, while the Silurian Longmaxi Formation was deposited under suboxic–anoxic environments with strong water restriction and low-to-moderate paleoproductivity. Organic matter enrichment in the Cambrian Niutitang Formation followed a “productivity + preservation model”, whereas the Silurian Longmaxi Formation primarily adhered to a “preservation-dominated model”. The differentiation in organic enrichment mechanisms between these two marine sequences is attributed to the distinct tectonic settings during their deposition. During the Early Cambrian, the Upper Yangtze Block was in a rift trough tectonic setting influenced by upwelling currents, which triggered algal blooms and subsequent bacterial sulfate reduction (BSR) coupled with marine anoxia and sulfidation. In contrast, the Early Silurian period featured a semi-restricted marine basin with weaker upwelling activity, where organic matter enrichment was predominantly controlled by a restricted, reducing water column. Our findings demonstrate that tectonic settings exert fundamental controls on nutrient availability for algal communities and water column retention levels, serving as critical determinants for organic enrichment processes in marine shale systems. Full article

Toxoplasmosis is a widely spread zoonosis worldwide, considered one of the most important parasitic infections that affect global public health, and usually, it is not correctly diagnosed. Serological tests for the diagnosis of Toxoplasma gondii infection have limitations in differentiating acute from chronic infection, which is important to determine the appropriate clinical management and treatment, mainly in pregnant women and immunocompromised individuals infected by this parasite. The present study aimed to characterize immunogenic epitopes from T. gondii immunodominant antigens, as SAG1(SRS29B), SAG2A (SRS34A), GRA1, GRA2, GRA3, GRA5, GRA6, GRA7, MAG1, BSR4, and CCp5A, by investigating if these parasite components might emerge as alternatives to improve the diagnosis of toxoplasmosis. A detailed comparative in silico analysis was used for this purpose. Once the protein sequences were retrieved from the ToxoDB database, different parameters were calculated, including physicochemical characteristics, accessibility values, and antigenicity. Multiple sequence alignment, 3D structures modeling, and the validation of 3D structures were also performed among all 11 peptides. Considering the results from the combination of all parameters analyzed, it can be hypothesized that the linear epitopes from SAG1, GRA3, and BSR4 proteins were found to be stable and hydrophilic, with a significant antigenicity score, and accessibility on the protein surface. Also, these three selected peptides were able to detect anti-T. gondii antibodies in serum samples from pigs infected by tachyzoites, when compared with control serum samples, obtained from the same naïve animals and tested by ELISA, demonstrating remarkable difference in terms of reactivity. Taken together, as our study addresses a critical challenge in the serodiagnosis of toxoplasmosis, particularly in gestational and congenital infections, where false-positive and false-negative results often arise from the use of native or recombinant antigens of T. gondii, our findings highlight the potential of synthetic peptides derived from novel epitopes of this parasite as alternative tools for the development of more accurate immunodiagnostic assays for toxoplasmosis. Full article

This study aimed to investigate the potential role of the vasoactive intestinal peptide receptor-1 (VIPR-1) gene polymorphisms and haplotypes in influencing egg production performance and egg quality parameters in laying-type quail. Genomic DNA was extracted from 150 quail across three strains: Chinese yellow (CY, n = 50), Beijing white (BW, n = 50), and Korean (KO, n = 50). We designed two pairs of primers and initiated PCR amplification, after which the amplified products were sent to a testing company for purification. Sanger sequencing was employed to identify single nucleotide polymorphisms (SNPs) within the VIPR-1 gene. Two SNP sites were selected for genotyping; g.1603402T>G was analyzed using PCR-RFLP with the BsrD I enzyme, while g.1614884A>G was genotyped using the HpyCH4 IV enzyme. The association results revealed that the g.1603402T>G site showed significant association with egg shell thickness (EST) in the BW strain (p < 0.05). There were no significant associations between these two loci and the remaining egg quality traits in the BW and KO strains (p > 0.05). Differences in egg quality and laying performance among haplotype combinations were not significant (p > 0.05). In conclusion, the VIPR-1 gene, with its identified polymorphisms and haplotypes, has potential as a molecular marker that could improve egg shell thickness in BW quail. Full article

Lesion mimic phenotypes, characterized by leaf spots formed in the absence of pathogens or pests, are often associated with reactive oxygen species (ROS) accumulation and cell necrosis. This study identified a novel and stable homozygous spotted phenotype (HSP) from the F₈ population of common wheat (XN509 × N07216). The yellow spots that appeared at the booting stage were light-sensitive, and accompanied by cell necrosis and H₂O₂ accumulation. Compared with homozygous normal plants (HNPs), HSPs exhibited enhanced resistance to stripe rust and powdery mildew without compromising yield. RNA-Seq analysis at three stages revealed that differentially expressed genes (DEGs) between HSPs and HNPs were significantly enriched in KEGG pathways related to photosynthesis and photosynthesis-antenna proteins. GO analysis highlighted chloroplast and light stimulus-related down-regulated DEGs. Fine mapping identified TaSpl1 within a 0.91 Mb interval on chromosome 3DS, flanked by the markers KASP188 and KASP229, using two segregating populations comprising 1117 individuals. The candidate region contained 42 annotated genes, including 14 DEGs based on previous BSR-Seq data. PCR amplification and qRT-PCR verification identified the expression of TraesCS3D02G022100 was consistent with RNA-Seq data. Gene homology analysis and silencing experiments confirmed that TraesCS3D02G022100 was associated with stay-green traits. These findings provide new insights into the genetic regulation of lesion mimics, photosynthesis, and disease resistance in wheat. Full article

Blumeria graminis f. sp. tritici (Bgt), the causal agent of wheat powdery mildew, poses a significant threat to global wheat production. In this study, we identified and characterized a broad-spectrum powdery mildew resistance gene, PmL709, in a resistant cultivated emmer wheat (Triticum dicoccum) accession: L709. Using bulked segregant RNA sequencing (BSR-Seq) analysis and molecular markers, PmL709 was mapped to a 1.7 cM interval on chromosome arm 2BS, flanked by markers Xdw05/YTU95-04/YTU95-06/YTU95-08/Xdw10/Xdw11 and YTU692B-094, corresponding to a 21.82–25.94 Mb physical interval (cv. Svevo), using the segregated population crossed by L709 and a susceptible durum wheat cultivar, Langdon. Referring to the origin, the resistance spectra, and the physical position with known resistance genes on chromosome arm 2BS, PmL709 was likely to be an allele of Pm68. Transcriptomic analysis revealed 3923 differentially expressed genes (DEGs) between resistant and susceptible bulks, enriched in pathways such as phenylpropanoid biosynthesis, MAPK signaling, and plant–pathogen interactions. qRT-PCR validated the differential expression of nine candidate genes within the PmL709 interval, highlighting their potential roles in disease resistance. The flanking markers could accurately trace the presence of PmL709 from resistant accession L709 in a survey of 46 susceptible wheat accessions. These findings provide valuable insights into the genetic and molecular mechanisms of powdery mildew resistance in wheat and offer practical tools for marker-assisted breeding to develop resistant cultivars. Full article

In response to the growing genetic uniformity within wheat populations, developing efficient wheat–alien translocation strategies has become critically important. We observed that several offspring of the common wheat (Triticum aestivum L.)–wild emmer (Triticum turgidum L. var. dicoccoides) chromosome arm substitution line (CASL4AL) exhibited stunted growth, including significantly reduced plant height, spike length, spikelet number, and stem width compared to normal plants. Integrative transcriptomic analyses (RNA-Seq and BSR-Seq) revealed a statistically significant depletion (p < 0.01) of single nucleotide polymorphisms (SNPs) on chromosome 4B in compromised plants. Chromosome association analysis of differentially expressed genes (DEGs, up- or downregulated) revealed that downregulated genes were predominantly located on chromosome 4B. The 1244 downregulated DEGs on Chr4B were employed for Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses, and RNA metabolic processes, DNA repair, and transport systems were significantly enriched by GO analysis; however, only the mRNA surveillance pathway was enriched by KEGG enrichment. Molecular marker profiling showed a complete absence of target amplification in the critical 0–155 Mb region of chromosome 4B in all weak plants. Pearson’s correlation coefficients confirmed significant associations (p < 0.01) between 4B-specific amplification and weak phenotypes. These results demonstrate that 4B segmental deletions drive weak phenotypes in CASL4AL progeny, and provide experimental evidence for chromosome deletions induced in wild emmer chromosome substitution lines. This study highlights the potential of wild emmer as a valuable tool for generating chromosomal variations in wheat breeding programs. Full article

When handling longitudinal data in regression models, we often encounter problems involving two interrelated response variables. These response variables may display an unknown curve shape in their relationship with one predictor variable, referred to as the nonparametric component, while maintaining a linear relationship with other predictor variables, referred to as the parametric component. In such cases, a Biresponse Semiparametric Regression (BSR) approach is a suitable solution. This research aims to estimate the BSR model for longitudinal data using the Local Polynomial Kernel (LPK) estimator by considering a symmetrical variance–covariance matrix estimate validated on simulation data and apply it to a real dataset of Dengue Hemorrhagic Fever (DHF) disease. The parameter estimation method used is a combination of Least Squares (LS) and Weighted Least Squares (WLS). For determining the optimal bandwidth, we use a Generalized Cross–Validation (GCV) method. The simulation study results indicate that with kernel weighting, employing weights derived from the inverse of the variance–covariance matrix significantly enhances the estimation accuracy of the BSR model. In addition, the results of the estimation for modeling the DHF disease, where platelets and hematocrit are response variables, and hemoglobin and examination time are predictor variables, produced an R-Square value of 92.8%. Full article

This study presents the formulation and comprehensive characterization of compatibilized polyamide 6 (PA6)/cyclic olefin copolymer (COC) blends with the aim of developing a self-healing matrix for thermoplastic structural composites. Rheological analysis highlighted the compatibilizing effect of ethylene glycidyl methacrylate (E-GMA), as evidenced by an increase in viscosity, melt strength (MS), and breaking stretching ratio (BSR), thus improving the processability during film extrusion. E-GMA also decreased COC domain size and improved the interfacial interaction with PA6, which was at the basis of a higher tensile strength and strain at break compared to neat PA6/COC blends. E-GMA also significantly boosted the healing efficiency (HE), measured via fracture toughness tests in quasi-static and impact conditions. The optimal healing temperature was identified as 160 °C, associated with an HE of 38% in quasi-static mode and 82% in impact mode for the PA6/COC blends with an E-GMA content of 5 wt% (PA6COC_5E-GMA). The higher healing efficiency under impact conditions was attributed to the planar fracture surface, which facilitated the flow of the healing agent in the crack zone, as proven by fractography analysis. This work demonstrates the potential of E-GMA in fine-tuning the thermomechanical properties of PA6/COC blends. PA6COC_5E-GMA emerged as the formulation with the best balance between processability and self-healing efficiency, paving the way for advanced multifunctional self-healing thermoplastic composites for structural applications. Full article

Background: Schizophrenia is classified by the World Health Organization (WHO) as one of the top ten diseases contributing to the global medical economic burden. Some studies have pointed out that exercise is effective for physical and mental health, as well as cognition. We hypothesized that participation in pickleball intervention would lead to improved self-esteem and reduced psychiatric symptoms in schizophrenia patients. Method: We recruited participants with schizophrenia from a long-term care facility and a regional hospital, dividing them into two groups based on the institutions. The experimental group underwent a nine-week pickleball exercise intervention, with sessions three times a week, each lasting 90 min, and a Dink ball test was conducted weekly. Questionnaires on self-esteem and the short-form health survey were collected both before and after the intervention. Result: This trial included 30 patients, divided equally into the experimental group (n = 15) and the control group (n = 15). After the nine-week pickleball intervention, there were no significant differences between the experimental and control groups in the Rosenberg Self-Esteem Scale (RSES) (p = 0.153) or the Brief Symptom Rating Scale (BSRS-5) (p = 0.289). However, the Dink test scores in the experimental group showed significant improvements in physical activity capabilities and attention over time, with average hit counts increasing from 5.3 ± 1.5 to 10.7 ± 2.3 (p < 0.01). Conclusions: Although the pickleball intervention did not yield significant differences in self-esteem and symptom measures between groups, the improvements observed in physical performance and attention in the experimental group suggest that exercise remains a feasible complementary approach for managing schizophrenia symptoms. Further research with larger sample sizes is recommended. Full article