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5,244 Results Found

  • Review
  • Open Access
123 Citations
13,670 Views
17 Pages

Challenges in the Integration of Omics and Non-Omics Data

  • Evangelina López de Maturana,
  • Lola Alonso,
  • Pablo Alarcón,
  • Isabel Adoración Martín-Antoniano,
  • Silvia Pineda,
  • Lucas Piorno,
  • M. Luz Calle and
  • Núria Malats

20 March 2019

Omics data integration is already a reality. However, few omics-based algorithms show enough predictive ability to be implemented into clinics or public health domains. Clinical/epidemiological data tend to explain most of the variation of health-rel...

  • Review
  • Open Access
31 Citations
8,306 Views
21 Pages

5 October 2023

The recent advent of sophisticated technologies like sequencing and mass spectroscopy platforms combined with artificial intelligence-powered analytic tools has initiated a new era of “big data” research in various complex diseases of sti...

  • Article
  • Open Access
6 Citations
4,667 Views
13 Pages

19 January 2024

The Omics Dashboard is a software tool for interactive exploration and analysis of metabolomics, transcriptomics, proteomics, and multi-omics datasets. Organized as a hierarchy of cellular systems, the Dashboard at its highest level contains graphica...

  • Commentary
  • Open Access
13 Citations
5,614 Views
6 Pages

Omics in Radiation Biology: Surprised but Not Disappointed

  • Prabal Subedi,
  • Simone Moertl and
  • Omid Azimzadeh

15 February 2022

High-throughput omics platforms have pioneered our approach to understanding biological and cellular processes. Omics technologies provide powerful tools for studying various molecules, such as genes, proteins, and metabolites, in a particular state...

  • Review
  • Open Access
163 Citations
17,653 Views
36 Pages

Multi-Omics Pipeline and Omics-Integration Approach to Decipher Plant’s Abiotic Stress Tolerance Responses

  • Rajib Roychowdhury,
  • Soumya Prakash Das,
  • Amber Gupta,
  • Parul Parihar,
  • Kottakota Chandrasekhar,
  • Umakanta Sarker,
  • Ajay Kumar,
  • Devade Pandurang Ramrao and
  • Chinta Sudhakar

16 June 2023

The present day’s ongoing global warming and climate change adversely affect plants through imposing environmental (abiotic) stresses and disease pressure. The major abiotic factors such as drought, heat, cold, salinity, etc., hamper a plant&rs...

  • Review
  • Open Access
37 Citations
8,245 Views
26 Pages

Cancer arises following alterations at different cellular levels, including genetic and epigenetic modifications, transcription and translation dysregulation, as well as metabolic variations. High-throughput omics technologies that allow one to ident...

  • Review
  • Open Access
23 Citations
8,013 Views
15 Pages

A Customizable Analysis Flow in Integrative Multi-Omics

  • Samuel M. Lancaster,
  • Akshay Sanghi,
  • Si Wu and
  • Michael P. Snyder

27 November 2020

The number of researchers using multi-omics is growing. Though still expensive, every year it is cheaper to perform multi-omic studies, often exponentially so. In addition to its increasing accessibility, multi-omics reveals a view of systems biology...

  • Review
  • Open Access
692 Views
30 Pages

5 January 2026

The integration of multi-omics approaches is changing microbial biotechnology towards greater environmental sustainability. This review aims to critically evaluate the application of integrative multi-omics and bioinformatics approaches to elucidate...

  • Review
  • Open Access
18 Citations
5,906 Views
23 Pages

Wheat Omics: Advancements and Opportunities

  • Deepmala Sehgal,
  • Priyanka Dhakate,
  • Heena Ambreen,
  • Khasim Hussain Baji Shaik,
  • Nagenahalli Dharmegowda Rathan,
  • Nayanahalli Munireddy Anusha,
  • Rupesh Deshmukh and
  • Prashant Vikram

17 January 2023

Plant omics, which includes genomics, transcriptomics, metabolomics and proteomics, has played a remarkable role in the discovery of new genes and biomolecules that can be deployed for crop improvement. In wheat, great insights have been gleaned from...

  • Review
  • Open Access
41 Citations
10,334 Views
25 Pages

Advances in Integrated Multi-omics Analysis for Drug-Target Identification

  • Peiling Du,
  • Rui Fan,
  • Nana Zhang,
  • Chenyuan Wu and
  • Yingqian Zhang

14 June 2024

As an essential component of modern drug discovery, the role of drug-target identification is growing increasingly prominent. Additionally, single-omics technologies have been widely utilized in the process of discovering drug targets. However, it is...

  • Review
  • Open Access
41 Citations
4,719 Views
16 Pages

Analysis of Nanotoxicity with Integrated Omics and Mechanobiology

  • Tae Hwan Shin,
  • Saraswathy Nithiyanandam,
  • Da Yeon Lee,
  • Do Hyeon Kwon,
  • Ji Su Hwang,
  • Seok Gi Kim,
  • Yong Eun Jang,
  • Shaherin Basith,
  • Sungsu Park and
  • Gwang Lee
  • + 1 author

13 September 2021

Nanoparticles (NPs) in biomedical applications have benefits owing to their small size. However, their intricate and sensitive nature makes an evaluation of the adverse effects of NPs on health necessary and challenging. Since there are limitations t...

  • Article
  • Open Access
699 Views
21 Pages

10 December 2025

Integration of multi-omics data provides a comprehensive perspective on complex biological systems, facilitating advances in disease classification and biomarker discovery. However, the heterogeneity and high dimensionality of omics data present sign...

  • Review
  • Open Access
7 Citations
2,697 Views
18 Pages

Ovarian Cancer: Multi-Omics Data Integration

  • Anna Kliuchnikova,
  • Arina Gordeeva,
  • Aziz Abdurakhimov,
  • Tatiana Materova,
  • Svetlana Tarbeeva,
  • Elizaveta Sarygina,
  • Anna Kozlova,
  • Olga Kiseleva,
  • Elena Ponomarenko and
  • Ekaterina Ilgisonis

This study focuses on the systematization and integration of ovarian cancer multi-omics data, revealing patterns in the application of different omics-based approaches and assessing factors that affect the identification of potential biomarkers. An i...

  • Review
  • Open Access
32 Citations
7,060 Views
26 Pages

Deep Learning Methods for Omics Data Imputation

  • Lei Huang,
  • Meng Song,
  • Hui Shen,
  • Huixiao Hong,
  • Ping Gong,
  • Hong-Wen Deng and
  • Chaoyang Zhang

7 October 2023

One common problem in omics data analysis is missing values, which can arise due to various reasons, such as poor tissue quality and insufficient sample volumes. Instead of discarding missing values and related data, imputation approaches offer an al...

  • Review
  • Open Access
57 Citations
13,496 Views
41 Pages

Omics-Based Investigations of Breast Cancer

  • Anca-Narcisa Neagu,
  • Danielle Whitham,
  • Pathea Bruno,
  • Hailey Morrissiey,
  • Celeste A. Darie and
  • Costel C. Darie

14 June 2023

Breast cancer (BC) is characterized by an extensive genotypic and phenotypic heterogeneity. In-depth investigations into the molecular bases of BC phenotypes, carcinogenesis, progression, and metastasis are necessary for accurate diagnoses, prognoses...

  • Review
  • Open Access
3 Citations
3,405 Views
23 Pages

Focus on Achalasia in the Omics Era

  • Anna Laura Pia Di Brina,
  • Orazio Palmieri,
  • Anna Lucia Cannarozzi,
  • Francesca Tavano,
  • Maria Guerra,
  • Fabrizio Bossa,
  • Marco Gentile,
  • Antonio Merla,
  • Giuseppe Biscaglia and
  • Anna Latiano
  • + 2 authors

21 September 2024

Achalasia is a rare and complex esophageal disease of unknown etiology characterized by difficulty in swallowing due to the lack of opening of the lower esophageal sphincter and the absence of esophageal peristalsis. Recent advancements in technology...

  • Review
  • Open Access
32 Citations
3,774 Views
13 Pages

Advancements in high-throughput technologies have made it feasible to study thousands of biological pathways simultaneously for a holistic assessment of health and disease risk via ‘omics platforms. A major challenge in ‘omics research re...

  • Review
  • Open Access
13 Citations
5,317 Views
13 Pages

The Potential of Omics in Biological Dosimetry

  • Daniela Hladik,
  • Martin Bucher,
  • David Endesfelder and
  • Ursula Oestreicher

17 January 2022

Biological dosimetry is an internationally recognized method for quantifying and estimating radiation dose following suspected or verified excessive exposure to ionising radiation. In severe radiation accidents where a large number of people are pote...

  • Review
  • Open Access
18 Citations
4,726 Views
22 Pages

9 June 2023

In recent years, the ecological and economic values of forest plants have been gradually recognized worldwide. However, the growing global demand for new forest plant varieties with higher wood production capacity and better stress tolerance cannot b...

  • Review
  • Open Access
2 Citations
2,668 Views
11 Pages

OMICS Approaches to Assess Dinoflagellate Responses to Chemical Stressors

  • Alice Roussel,
  • Vincent Mériot,
  • Thierry Jauffrais,
  • Véronique Berteaux-Lecellier and
  • Nicolas Lebouvier

13 September 2023

Dinoflagellates are important primary producers known to form Harmful Algae Blooms (HABs). In water, nutrient availability, pH, salinity and anthropogenic contamination constitute chemical stressors for them. The emergence of OMICs approaches propell...

  • Review
  • Open Access
11 Citations
9,084 Views
22 Pages

Recent Web Platforms for Multi-Omics Integration Unlocking Biological Complexity

  • Eugenia Papadaki,
  • Ioannis Kakkos,
  • Panagiotis Vlamos,
  • Ourania Petropoulou,
  • Stavros T. Miloulis,
  • Stergios Palamas and
  • Aristidis G. Vrahatis

31 December 2024

The rapid advancement of high-throughput technologies has led to the generation of vast amounts of omics data, including genomics, epigenomics, and metabolomics. Integrating these diverse datasets has become essential for gaining comprehensive insigh...

  • Review
  • Open Access
16 Citations
6,786 Views
25 Pages

In the past decade, immunotherapies have been emerging as an effective way to treat cancer. Among several categories of immunotherapies, immune checkpoint inhibitors (ICIs) are the most well-known and widely used options for cancer treatment. Althoug...

  • Perspective
  • Open Access
2 Citations
1,529 Views
25 Pages

The Emerging Role of Omics-Based Approaches in Plant Virology

  • Viktoriya Samarskaya,
  • Nadezhda Spechenkova,
  • Natalia O. Kalinina,
  • Andrew J. Love and
  • Michael Taliansky

15 July 2025

Virus infections in plants are a major threat to crop production and sustainable agriculture, which results in significant yield losses globally. The past decade has seen the development and deployment of sophisticated high-throughput omics technolog...

  • Review
  • Open Access
1,231 Views
31 Pages

Omics for Improving Seed Quality and Yield

  • Jake Cummane,
  • William J. W. Thomas,
  • Maria Lee,
  • Mohammad Sayari,
  • David Edwards,
  • Jacqueline Batley and
  • Aria Dolatabadian

24 October 2025

Seed-related traits such as seed size, germination, vigour, dormancy, biochemical composition, and stress resistance are critical to ensuring agricultural productivity and global food security, particularly in current scenarios of climate change and...

  • Review
  • Open Access
15 Citations
11,014 Views
34 Pages

Spatial omics integrates molecular profiling with spatial tissue context, enabling high-resolution analysis of gene expression, protein interactions, and epigenetic modifications. This approach provides critical insights into disease mechanisms and t...

  • Review
  • Open Access
37 Citations
10,920 Views
17 Pages

Multi Omics Applications in Biological Systems

  • Cristian D. Gutierrez Reyes,
  • Gerardo Alejo-Jacuinde,
  • Benjamin Perez Sanchez,
  • Jesus Chavez Reyes,
  • Sherifdeen Onigbinde,
  • Damir Mogut,
  • Irma Hernández-Jasso,
  • Denisse Calderón-Vallejo,
  • J. Luis Quintanar and
  • Yehia Mechref

Traditional methodologies often fall short in addressing the complexity of biological systems. In this regard, system biology omics have brought invaluable tools for conducting comprehensive analysis. Current sequencing capabilities have revolutioniz...

  • Review
  • Open Access
5 Citations
3,875 Views
12 Pages

15 January 2023

Systems biology has been increasingly applied with multiple omics for a holistic comprehension of complex biological systems beyond the reductionist approach that focuses on individual molecules. Different high-throughput omics approaches, including...

  • Review
  • Open Access
4 Citations
5,692 Views
9 Pages

Recent progress in Omics technologies has started to empower personalized healthcare development at a thorough biomolecular level. Omics have subsidized medical breakthroughs that have started to enter clinical proceedings. The use of this scientific...

  • Review
  • Open Access
27 Citations
5,712 Views
17 Pages

Multi-Omics-Based Discovery of Plant Signaling Molecules

  • Fei Luo,
  • Zongjun Yu,
  • Qian Zhou and
  • Ancheng Huang

13 January 2022

Plants produce numerous structurally and functionally diverse signaling metabolites, yet only relatively small fractions of which have been discovered. Multi-omics has greatly expedited the discovery as evidenced by increasing recent works reporting...

  • Review
  • Open Access
7 Citations
3,138 Views
20 Pages

Application of Pan-Omics Technologies in Research on Important Economic Traits for Ruminants

  • Zhendong Gao,
  • Ying Lu,
  • Mengfei Li,
  • Yuqing Chong,
  • Jieyun Hong,
  • Jiao Wu,
  • Dongwang Wu,
  • Dongmei Xi and
  • Weidong Deng

27 August 2024

The economic significance of ruminants in agriculture underscores the need for advanced research methodologies to enhance their traits. This review aims to elucidate the transformative role of pan-omics technologies in ruminant research, focusing on...

  • Review
  • Open Access
10 Citations
4,713 Views
15 Pages

Knowledge Generation with Rule Induction in Cancer Omics

  • Giovanni Scala,
  • Antonio Federico,
  • Vittorio Fortino,
  • Dario Greco and
  • Barbara Majello

The explosion of omics data availability in cancer research has boosted the knowledge of the molecular basis of cancer, although the strategies for its definitive resolution are still not well established. The complexity of cancer biology, given by t...

  • Review
  • Open Access
404 Citations
21,600 Views
13 Pages

The Need for Multi-Omics Biomarker Signatures in Precision Medicine

  • Michael Olivier,
  • Reto Asmis,
  • Gregory A. Hawkins,
  • Timothy D. Howard and
  • Laura A. Cox

26 September 2019

Recent advances in omics technologies have led to unprecedented efforts characterizing the molecular changes that underlie the development and progression of a wide array of complex human diseases, including cancer. As a result, multi-omics analyses&...

  • Review
  • Open Access
17 Citations
5,591 Views
17 Pages

Multi-Omics Advancements towards Plasmodium vivax Malaria Diagnosis

  • Shalini Aggarwal,
  • Weng Kung Peng and
  • Sanjeeva Srivastava

28 November 2021

Plasmodium vivax malaria is one of the most lethal infectious diseases, with 7 million infections annually. One of the roadblocks to global malaria elimination is the lack of highly sensitive, specific, and accurate diagnostic tools. The absence of d...

  • Review
  • Open Access
41 Citations
7,157 Views
19 Pages

Multi-Omics Techniques for Soybean Molecular Breeding

  • Pan Cao,
  • Ying Zhao,
  • Fengjiao Wu,
  • Dawei Xin,
  • Chunyan Liu,
  • Xiaoxia Wu,
  • Jian Lv,
  • Qingshan Chen and
  • Zhaoming Qi

Soybean is a major crop that provides essential protein and oil for food and feed. Since its origin in China over 5000 years ago, soybean has spread throughout the world, becoming the second most important vegetable oil crop and the primary source of...

  • Review
  • Open Access
3 Citations
4,241 Views
26 Pages

17 October 2023

Advanced genomics, transcriptomics, and epigenomics techniques are providing unprecedented insights into the understanding of the molecular underpinnings of the central nervous system, including the neuro-sensory cochlea of the inner ear. Here, we re...

  • Review
  • Open Access
6 Citations
4,038 Views
19 Pages

Drug Discovery and Development for Heart Failure Using Multi-Omics Approaches

  • Danielle Rasooly,
  • Alexandre C. Pereira and
  • Jacob Joseph

Heart failure (HF) is a complex, heterogeneous syndrome with rising prevalence and high morbidity and mortality. The pathophysiology and diverse etiologies of HF present significant challenges for developing effective therapies. Omics technologies&md...

  • Review
  • Open Access
47 Citations
8,574 Views
28 Pages

Multi-Omics Profiling Approach to Asthma: An Evolving Paradigm

  • Yadu Gautam,
  • Elisabet Johansson and
  • Tesfaye B. Mersha

7 January 2022

Asthma is a complex multifactorial and heterogeneous respiratory disease. Although genetics is a strong risk factor of asthma, external and internal exposures and their interactions with genetic factors also play important roles in the pathophysiolog...

  • Review
  • Open Access
15 Citations
8,902 Views
22 Pages

Defining NASH from a Multi-Omics Systems Biology Perspective

  • Lili Niu,
  • Karolina Sulek,
  • Catherine G. Vasilopoulou,
  • Alberto Santos,
  • Nicolai J. Wewer Albrechtsen,
  • Simon Rasmussen,
  • Florian Meier and
  • Matthias Mann

12 October 2021

Non-alcoholic steatohepatitis (NASH) is a chronic liver disease affecting up to 6.5% of the general population. There is no simple definition of NASH, and the molecular mechanism underlying disease pathogenesis remains elusive. Studies applying singl...

  • Review
  • Open Access
66 Citations
7,899 Views
16 Pages

Omics Approaches for Engineering Wheat Production under Abiotic Stresses

  • Tariq Shah,
  • Jinsong Xu,
  • Xiling Zou,
  • Yong Cheng,
  • Mubasher Nasir and
  • Xuekun Zhang

Abiotic stresses greatly influenced wheat productivity executed by environmental factors such as drought, salt, water submergence and heavy metals. The effective management at the molecular level is mandatory for a thorough understanding of plant res...

  • Review
  • Open Access
8 Citations
2,969 Views
27 Pages

Omics in Keratoconus: From Molecular to Clinical Practice

  • Sandra Carolina Durán-Cristiano,
  • Andres Bustamante-Arias,
  • Geysson Javier Fernandez,
  • Alba Martin-Gil and
  • Gonzalo Carracedo

3 April 2025

Keratoconus (KC) is a progressive ocular disorder marked by structural and functional alterations of the cornea, leading to significant visual impairment. Recent studies indicate that these corneal changes are linked to molecular and cellular mechani...

  • Review
  • Open Access
6 Citations
3,037 Views
26 Pages

Application of Multi-Omics Techniques in Aquatic Ecotoxicology: A Review

  • Boyang Li,
  • Yizhang Zhang,
  • Jinzhe Du,
  • Chen Liu,
  • Guorui Zhou,
  • Mingrui Li and
  • Zhenguang Yan

31 July 2025

Traditional ecotoxicology primarily investigates pollutant toxicity through physiological, biochemical, and single-molecular indicators. However, the limited data obtained through this approach constrain its application in the mechanistic analysis of...

  • Review
  • Open Access
7 Citations
3,188 Views
17 Pages

Advanced Omics and Radiobiological Tissue Archives: The Future in the Past

  • Omid Azimzadeh,
  • Maria Gomolka,
  • Mandy Birschwilks,
  • Shin Saigusa,
  • Bernd Grosche and
  • Simone Moertl

23 November 2021

Archival formalin-fixed, paraffin-embedded (FFPE) tissues and their related diagnostic records are an invaluable source of biological information. The archival samples can be used for retrospective investigation of molecular fingerprints and biomarke...

  • Review
  • Open Access
10 Citations
4,353 Views
19 Pages

Omics as a Tool to Help Determine the Effectiveness of Supplements

  • Anna Steg,
  • Maria Oczkowicz and
  • Grzegorz Smołucha

14 December 2022

There has been considerable interest in dietary supplements in the last two decades. Companies are releasing new specifics at an alarming pace, while dietary supplements are one of the less-studied substances released for public consumption. However,...

  • Review
  • Open Access
4 Citations
3,657 Views
21 Pages

Application of Multi-Omics Technologies to the Study of Phytochromes in Plants

  • Shumei Wu,
  • Yue Gao,
  • Qi Zhang,
  • Fen Liu and
  • Weiming Hu

14 January 2024

Phytochromes (phy) are distributed in various plant organs, and their physiological effects influence plant germination, flowering, fruiting, and senescence, as well as regulate morphogenesis throughout the plant life cycle. Reactive oxygen species (...

  • Review
  • Open Access
1 Citations
1,391 Views
23 Pages

Integrating Machine Learning and Multi-Omics to Explore Neutrophil Heterogeneity

  • Zhiqiang Lin,
  • Tingting Yang,
  • Deng Chen,
  • Peidong Zhang,
  • Jialiu Luo,
  • Shunyao Chen,
  • Shuaipeng Gu,
  • Youxie Shen,
  • Tingxuan Tang and
  • Zhaohui Tang
  • + 3 authors

Traditionally considered as homogeneous innate immune cells, neutrophils are now found to exhibit phenotypic and functional heterogeneity. How to determine whether the functional changes of neutrophils are caused by activation or the result of gene r...

  • Review
  • Open Access
25 Citations
5,708 Views
35 Pages

Fab Advances in Fabaceae for Abiotic Stress Resilience: From ‘Omics’ to Artificial Intelligence

  • Dharmendra Singh,
  • Priya Chaudhary,
  • Jyoti Taunk,
  • Chandan Kumar Singh,
  • Deepti Singh,
  • Ram Sewak Singh Tomar,
  • Muraleedhar Aski,
  • Noren Singh Konjengbam,
  • Ranjeet Sharan Raje and
  • Madan Pal
  • + 3 authors

29 September 2021

Legumes are a better source of proteins and are richer in diverse micronutrients over the nutritional profile of widely consumed cereals. However, when exposed to a diverse range of abiotic stresses, their overall productivity and quality are hugely...

  • Review
  • Open Access
11 Citations
4,670 Views
21 Pages

Due to their unique multi-gastric digestion system highly adapted for rumination, dairy livestock has complicated physiology different from monogastric animals. However, the microbiome-based mechanism of the digestion system is congenial for biology...

  • Feature Paper
  • Review
  • Open Access
44 Citations
8,420 Views
24 Pages

Current State of “Omics” Biomarkers in Pancreatic Cancer

  • Beste Turanli,
  • Esra Yildirim,
  • Gizem Gulfidan,
  • Kazim Yalcin Arga and
  • Raghu Sinha

14 February 2021

Pancreatic cancer is one of the most fatal malignancies and the seventh leading cause of cancer-related deaths related to late diagnosis, poor survival rates, and high incidence of metastasis. Unfortunately, pancreatic cancer is predicted to become t...

  • Review
  • Open Access
4 Citations
1,187 Views
50 Pages

Application of Omics and Bioinformatics Tools in Streptococcus Research

  • Min Liao,
  • Ting Tong,
  • Yawen Zong,
  • Xuedong Zhou,
  • Lei Cheng,
  • Ruijie Huang,
  • Biao Ren and
  • Gil Alterovitz

Researchers used to focus on analyzing single gene or protein expression of the microbes. But recently, genome, transcriptome, proteome and metabolome have gained more and more attention. Based on technologies of omics, including genomics, transcript...

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