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Keywords = Paraphoma chrysanthemicola

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16 pages, 5406 KB  
Article
Microbial Community Structure and Diversity of Endophytic Bacteria and Fungi in the Healthy and Diseased Roots of Angelica sinensis, and Identification of Pathogens Causing Root Rot
by Yaya Cheng, Xiaoyun Zhang, Wenwen Zhang, Jianmei Dong, Yanjun Ma, Aimei Zhang, Fujun Han, Hai Peng and Weibao Kong
Microorganisms 2025, 13(2), 417; https://doi.org/10.3390/microorganisms13020417 - 14 Feb 2025
Cited by 3 | Viewed by 2294
Abstract
Angelica sinensis (Oliv.) Diels is an important traditional Chinese herbal medicine, and its main medicinal part is the root. In recent years, root rot has become one of the bottlenecks hindering the healthy and green development of Angelica cultivation due to the inappropriate [...] Read more.
Angelica sinensis (Oliv.) Diels is an important traditional Chinese herbal medicine, and its main medicinal part is the root. In recent years, root rot has become one of the bottlenecks hindering the healthy and green development of Angelica cultivation due to the inappropriate application of chemical fertilizers, pesticides, plant growth regulators, and continuous cropping. In this study, high-throughput sequencing technology was adopted to reveal the differences in the community structure and diversity of endophytic bacteria and fungi in the roots of healthy and diseased A. sinensis. The results showed that the diversity index of endophytic bacterial communities was significantly higher in healthy root than in diseased Angelica root systems. There was a significant difference in endophytic fungal community diversity only at the m1 sampling site. There was a significant difference in the β-diversity of bacterial communities, but not of fungi. In terms of community composition, Proteobacteria was the dominant phylum of bacteria, and Sphingobium and Pseudomonas were the dominant genera; Ascomycota and Basidiomycota were the dominant phyla of fungi, and Plectosphaerella, Paraphoma, and Fusarium were the dominant genera. In addition, the relative abundance of the genera Sphingobium and Pseudomonas was higher in healthy roots, while Fusarium was higher in diseased samples. Among the five pathogens isolated from diseased root, four strains were Fusarium sp., and one was Paraphoma chrysanthemicola, which is reported for the first time. Our findings indicate that the endophyte community structure of A. sinensis infected with root rot changed significantly compared with healthy plants, and Fusarium is an important pathogenic factor, which provides a valuable microbiological basis for the targeted biocontrol of Angelica root rot. Full article
(This article belongs to the Section Plant Microbe Interactions)
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18 pages, 5765 KB  
Article
Paraphoma chrysanthemicola Affects the Carbohydrate and Lobetyolin Metabolism Regulated by Salicylic Acid in the Soilless Cultivation of Codonopsis pilosula
by Wenbin Sun, Caiming Luo, Yamiao Wu, Miao Ding, Min Feng, Feifan Leng and Yonggang Wang
Biology 2024, 13(6), 408; https://doi.org/10.3390/biology13060408 - 3 Jun 2024
Cited by 2 | Viewed by 2042
Abstract
Paraphoma chrysanthemicola, an endophytic fungus isolated from the roots of Codonopsis pilosula, influences salicylic acid (SA) levels. The interaction mechanism between SA and P. chrysanthemicola within C. pilosula remains elusive. To elucidate this, an experiment was conducted with four treatments: sterile [...] Read more.
Paraphoma chrysanthemicola, an endophytic fungus isolated from the roots of Codonopsis pilosula, influences salicylic acid (SA) levels. The interaction mechanism between SA and P. chrysanthemicola within C. pilosula remains elusive. To elucidate this, an experiment was conducted with four treatments: sterile water (CK), P. chrysanthemicola (FG), SA, and a combination of P. chrysanthemicola with salicylic acid (FG+SA). Results indicated that P. chrysanthemicola enhanced plant growth and counteracted the growth inhibition caused by exogenous SA. Physiological analysis showed that P. chrysanthemicola reduced carbohydrate content and enzymatic activity in C. pilosula without affecting total chlorophyll concentration and attenuated the increase in these parameters induced by exogenous SA. Secondary metabolite profiling showed a decrease in soluble proteins and lobetyolin levels in the FG group, whereas SA treatment led to an increase. Both P. chrysanthemicola and SA treatments decreased antioxidase-like activity. Notably, the FG group exhibited higher nitric oxide (NO) levels, and the SA group exhibited higher hydrogen peroxide (H2O2) levels in the stems. This study elucidated the intricate context of the symbiotic dynamics between the plant species P. chrysanthemicola and C. pilosula, where an antagonistic interaction involving salicylic acid was prominently observed. This antagonism was observed in the equilibrium between carbohydrate metabolism and secondary metabolism. This equilibrium had the potential to engage reactive oxygen species (ROS) and nitric oxide (NO). Full article
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17 pages, 6673 KB  
Article
Genomic Characteristics and Comparative Genomics Analysis of the Endophytic Fungus Paraphoma chrysanthemicola DS-84 Isolated from Codonopsis pilosula Root
by Wenbin Sun, Min Feng, Ning Zhu, Feifan Leng, Mingjun Yang and Yonggang Wang
J. Fungi 2023, 9(10), 1022; https://doi.org/10.3390/jof9101022 - 16 Oct 2023
Cited by 8 | Viewed by 3188
Abstract
Paraphoma chrysanthemicola is a newly identified endophytic fungus. The focus of most studies on P. chrysanthemicola has been on its isolation, identification and effects on plants. However, the limited genomic information is a barrier to further research. Therefore, in addition to studying the [...] Read more.
Paraphoma chrysanthemicola is a newly identified endophytic fungus. The focus of most studies on P. chrysanthemicola has been on its isolation, identification and effects on plants. However, the limited genomic information is a barrier to further research. Therefore, in addition to studying the morphological and physiological characteristics of P. chrysanthemicola, we sequenced its genome and compared it with that of Paraphoma sp. The results showed that sucrose, peptone and calcium phosphate were suitable sources of carbon, nitrogen and phosphorus for this strain. The activities of amylase, cellulase, chitosanase, lipase and alkaline protease were also detected. Sequencing analysis revealed that the genome of P. chrysanthemicola was 44.1 Mb, with a scaffold N50 of 36.1 Mb and 37,077 protein-coding genes. Gene Ontology (GO) annotation showed that mannose-modified glycosylation was predominant in monosaccharide utilisation. The percentage of glycoside hydrolase (GH) modules was the highest in the carbohydrate-active enzymes database (CAZy) analysis. Secondary metabolite-associated gene cluster analysis identified melanin, dimethylcoprogen and phyllostictine A biosynthetic gene clusters (>60% similarity). The results indicated that P. chrysanthemicola had a mannose preference in monosaccharide utilisation and that melanin, dimethylcoprogen and phyllostictine A were important secondary metabolites for P. chrysanthemicola as an endophytic fungus. Full article
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22 pages, 6068 KB  
Article
Improved Tolerance of Artemisia ordosica to Drought Stress via Dark Septate Endophyte (DSE) Symbiosis
by Xia Li, Xue Zhang, Minghui Xu, Qiannan Ye, Huili Gao and Xueli He
J. Fungi 2022, 8(7), 730; https://doi.org/10.3390/jof8070730 - 13 Jul 2022
Cited by 34 | Viewed by 4603
Abstract
Dark septate endophytes (DSEs) usually colonize plant roots, especially in stress environments. However, their relationship with plants ranges from beneficial to harmful and has remained largely uncharacterized. In the present study, 14 DSE species grouped into 11 genera were isolated from the roots [...] Read more.
Dark septate endophytes (DSEs) usually colonize plant roots, especially in stress environments. However, their relationship with plants ranges from beneficial to harmful and has remained largely uncharacterized. In the present study, 14 DSE species grouped into 11 genera were isolated from the roots of a desert plant, Artemisia ordosica, which is widely distributed in northwest China. Three dominant DSE species—Paraphoma chrysanthemicola (Pc), Alternaria chartarum (Ac), and Acrocalymma vagum (Av)—were selected and tested for their resistance to drought in vitro. Furthermore, we characterized the responses of A. ordosica under drought conditions in relation to the presence of these DSEs following inoculation. The results showed that all three strains grew well under in vitro drought stress, and the biomass of Ac and Av was significantly higher than that of the unstressed control. The effects of DSE inoculation on the growth of A. ordosica under drought stress varied according to the different DSE species but were generally beneficial. Under drought stress, Av and Pc promoted plant growth, antioxidant enzyme activity, and root development of the hosts. The Ac strain conferred obvious positive effects on the antioxidant enzyme activity of the hosts. In general, Av and Pc demonstrated better application potential for improving the drought resistance of A. ordosica. Full article
(This article belongs to the Special Issue Beneficial Plant–Fungal Interactions)
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