Search Results (393)

The NRAMP (Natural Resistance-Associated Macrophage Protein) family plays a pivotal role as membrane transporters in plants’ responses to heavy metal stress. This study identified 12 NRAMP genes in Sorghum bicolor (sorghum) and performed a comprehensive bioinformatics analysis. The SbNRAMP genes are distributed across seven sorghum chromosomes. In-depth analyses of gene structure, conserved motifs, collinearity, and phylogeny indicated that the SbNRAMP family is divided into three subfamilies, each exhibiting unique structural and motif characteristics. Collinearity analysis suggested that large-fragment duplications, rather than tandem duplications, were responsible for the expansion of the SbNRAMP family, resulting in a greater number of genes compared to Arabidopsis thaliana and rice. Transcriptome analysis of the aboveground and underground parts of sorghum seedlings under saline–alkali stress revealed that SbNRAMP5 is a key hub gene exhibiting tissue-specific expression. Furthermore, qRT-PCR analysis following exposure to Cd, Mn, or Zn treatments revealed differential expression among the SbNRAMP genes. Subcellular localization predictions indicated that all twelve NRAMPs are primarily located in the plasma membrane, with nine to twelve transmembrane domains, consistent with their function in metal ion transport. Experimental evidence confirmed that SbNRAMP6 is localized in the plasma membrane. These findings establish a foundation for a deeper understanding of the structure and function of the sorghum NRAMP gene family. Full article

Given the pressing global food security crisis and climate change-induced constraints on agricultural productivity, crop rotation proves critical for boosting yield and grain quality of winter wheat (Triticum aestivum) alongside ameliorating soil quality. However, the legacy effect of different preceding crops on synergistic increments of wheat productivity and soil fertility remains to be fully clarified. Five different preceding crop–winter wheat rotations were conducted in a field experiment established in Huanghua, China. Maize (Zea mays), sorghum (Sorghum bicolor), and millet (Setaria italica) were designated as preceding gramineous crops, and soybean (Glycine max) and mung bean (Vigna radiata) were assigned as preceding legume crops. Grain yield, protein fraction, and soil nutrients were measured to elucidate the legacy effect of the preceding crops on the subsequent winter wheat. Leguminous predecessors significantly evaluated the grain yield of winter wheat compared to gramineous predecessors, particularly that the mung–winter wheat rotation (Mun-W) was 11.56% higher than that of the maize–winter wheat rotation (Mai-W). This rising yield was attributed to the increase of 4.05% in spike number per hectare and 14.31% in kernel number per spike. The Mun-W facilitated the highest gluten protein content (8.22%) in winter wheat among five treatments, which was 6.06% higher than that in the sorghum–winter wheat system. Soil organic matter (SOM) showed an advantage in legume–winter wheat rotations (Leg-Ws) compared to gramineous crop–winter wheat systems (Gra-Ws). Notably among these, the Mun-W significantly enhanced SOM content by 0.99% relative to the Mai-W. The soybean–winter wheat system decreased soil pH by 0.36 compared to the Mai-W system. Coupling coordination degree (CCD) and co-benefit index (CBI) in the Leg-Ws exhibited significant superiority of 62.41% and 42.22% over the Gra-Ws, respectively, and the Mun-W attained maximum CCD by 0.84 and CBI by 0.77. From a multi-objective assessment perspective of the legacy effect of the preceding crops, legume-based rotations facilitate synergistic improvements of yield, protein quality, and soil nutrients in winter wheat. Full article

Drought stress significantly limits crop growth and yield, and the mechanisms underlying genotypic variation in drought tolerance remain unclear. This study investigated the growth and transcriptomic responses of two sorghum varieties, drought-sensitive Jinza 35 (V1) and drought-tolerant Longza 24 (V2), under drought conditions. Comparative transcriptomic analysis, along with Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses, revealed distinct molecular mechanisms between the two varieties. Both varieties exhibited drought-responsive changes in photosynthesis-related pathways. However, the drought-tolerant V2 showed significant enrichment in phenylpropanoid biosynthesis, starch-sucrose metabolism, and plant hormone signaling pathways, suggesting enhanced metabolic flexibility under stress. In contrast, V1 primarily activated ribosome metabolism and cell cycle regulation pathways, indicating a less adaptive response focused on basic cellular processes. These findings highlight key metabolic and regulatory differences underlying drought tolerance in sorghum. The study provides valuable molecular insights and candidate pathways for future functional studies and the breeding of drought-resistant sorghum varieties. Full article

Tropical forage crops vary widely in biochemical composition, resulting in inconsistent silage quality. Understanding how plant traits shape microbial and metabolic networks during ensiling is crucial for optimizing fermentation outcomes. Eight tropical forages—Sorghum bicolor (sweet sorghum), Sorghum × drummondii (sorghum–Sudangrass hybrid), Sorghum sudanense (Sudangrass), Pennisetum giganteum (giant Napier grass), Pennisetum purpureum cv. Purple (purple elephant grass), Pennisetum sinese (king grass), Leymus chinensis (sheep grass), and Zea mexicana (Mexican teosinte)—were ensiled under uniform conditions. Fermentation quality, bacterial and fungal communities (16S rRNA and ITS sequencing), and metabolite profiles (untargeted liquid chromatography–mass spectrometry, LC-MS) were analyzed after 60 days. Sweet sorghum and giant Napier grass showed optimal fermentation, with high lactic acid levels (111.2 g/kg and 99.4 g/kg, respectively), low NH₄⁺-N (2.4 g/kg and 3.1 g/kg), and dominant Lactiplantibacillus plantarum. In contrast, sheep grass and Mexican teosinte exhibited poor fermentation, with high NH₄⁺-N (6.7 and 6.1 g/kg) and Clostridium dominance. Fungal communities were dominated by Kazachstania humilis (>95%), while spoilage-associated genera such as Cladosporium, Fusarium, and Termitomyces proliferated in poorly fermented silages. Metabolomic analysis identified 15,827 features, with >3000 significantly differential metabolites between silages. Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment revealed divergence in flavonoid biosynthesis, lipid metabolism, and amino acid pathways. In the sweet sorghum vs. sheep grass comparison, oxidative stress markers ((±) 9-HODE, Agrimonolide) were elevated in sheep grass, while sweet sorghum accumulated antioxidants like Vitamin D3. Giant Napier grass exhibited higher levels of antimicrobial flavonoids (e.g., Apigenin) than king grass, despite both being dominated by lactic acid bacteria. Sorghum–Sudangrass hybrid silage showed enrichment of lignan and flavonoid derivatives, while Mexican teosinte accumulated hormone-like compounds (Gibberellin A53, Pterostilbene), suggesting microbial dysbiosis. These findings indicate that silage fermentation outcomes are primarily driven by forage-intrinsic traits. A “forage–microbiota–metabolite” framework was proposed to explain how plant-specific properties regulate microbial assembly and metabolic output. These insights can guide forage selection and development of precision inoculant for high-quality tropical silage. Full article

Background: The Dirigent (DIR) gene family is pivotal for lignin polymerization and stress adaptation in plants, yet its systematic characterization in Sorghum bicolor (S. bicolor), a critical bioenergy crop, remains underexplored. Methods: Leveraging the S. bicolor genome database, we conducted a genome-wide identification, phylogenetic classification, and expression profiling of the DIR gene family. Evolutionary dynamics, gene structure variations, promoter cis-regulatory elements, and spatiotemporal transcriptome patterns were analyzed using bioinformatics and experimental validation (RT-qPCR). Results: A total of 53 SbDIR genes were systematically identified, exhibiting uneven chromosomal distribution. Phylogenetic analysis clustered them into five clades (DIR-a, DIR-b/d, DIR-c, DIR-e, DIR-f), with subfamily-specific exon number variations suggesting functional divergence. Evolutionary studies revealed tandem duplication (TD) as the primary driver of family expansion, accompanied by strong purifying selection. Promoter analysis highlighted abundant hormone- and stress-responsive cis-elements. Tissue-specific RNA-seq data revealed root-enriched expression of SbDIR2/4/18/39/44/53, implicating their roles in root development. Notably, SbDIR39 and SbDIR53 were significantly upregulated (2.8- and 5-fold, respectively) under 150 mM NaCl stress, underscoring their stress-responsive functions. Conclusions: This study provides the first comprehensive atlas of the DIR gene family in S. bicolor, elucidating its evolutionary mechanisms and tissue-specific/stress-induced expression profiles. Key candidates (SbDIR39/53) were identified as promising targets for molecular breeding or CRISPR-based editing to enhance stress resilience in S. bicolor. These findings lay a foundation for translating genomic insights into agronomic improvements. Full article

Forage sorghum (Sorghum bicolor (L.)) is a cereal native to Africa and belongs to the family Poaceae. It is a forage with a C4 photosynthetic pathway that stands out for its ability to adapt to different environments; it is able to produce even in unfavorable circumstances. The objective of this study was to analyze the attenuating effect of the brassinosteroid hormone in the form of 24-epibrassinolide on forage sorghum plants subjected to water deficit and rehydration. A completely randomized design (CRD) was used in the experiment. A 2 × 3 × 5 factorial arrangement was used, with two water conditions (water deficit and rehydration), three brassinosteroid doses (0 nM, 50 nM, and 100 nM as 24-epibrassinolide), and five replicates. The experiment was conducted in a greenhouse. Sorghum seeds were sown in pots with a capacity of 3 kg of substrate. Analyses were performed on the roots and leaves of sorghum plants at different growth stages. The macronutrients (N, P, K, Ca, and Mg) were analyzed in the soil physics laboratory. As a result, the content of N, P, K, Ca, and Mg decreased under a water deficit and was then restored by the hormone 24-epibrassinolide, which was able to restore these nutrients. The effect of the hormone under rehydration had a positive effect, increasing the levels of nutrients. Given the above, it was possible to conclude that there were no significant divergences between the treatments during the period of irrigation suspension. Among the tested concentrations, 50 nM of 24-epibrassinolide showed the most consistent improvements in nutrient concentrations under water-deficit conditions, suggesting a potential role in mitigating nutritional imbalance during stress. Rehydrated plants maintained nutrient levels similar to the controls regardless of 24-epibrassinolide application. However, it is important to note that nutritional quality indices such as crude protein and total digestible nutrients (TDN) were not evaluated in this study, which limits direct conclusions about the forage nutritional value. Full article

Amaranthus is appointed as a common weed associated with crops. The research was designed to survey the Amaranth existence pattern throughout the Fayoum Depression, Egypt, accompanied with a community vegetation analysis. The study was extended to collect and analyze associated soil samples. The obtained results figured out the prevalence of dicot families, herb growth forms, therophyte followed by phanerophyte life forms, the Pantropical monoregional chorotype, and the Mediterranean and Sudano-Zambezian followed by the Irano-Turanian pluri-regional chorotype. Multilevel pattern analysis stated that Gossypium barbadense, Corchorus olitorius, Sorghum bicolor, Sesamum indicum, and Zea mays are indicator species most related to Amaranth occurrence and prediction. NMDS analysis denoting that the Ibshaway, Youssef Al Seddik, Itsa, and Fayoum districts are the most representative districts for Amaranth existence on the basis of edaphic resources. Itsa and Youssef Al Seddik, in addition to Itsa and Fayoum, resemble each other in species composition. High pH and CaCO₃ percentages were discriminatory in Ibshaway, Itsa, and Youssef Al Seddik. Ni was the cornerstone for districts partitioning in pruned trees. Finally, Amaranth was flourishing in both comfortable and harsh habitats with cultivated crops and orchards, as well as on the outskirts. The findings are considered to be valorized by decision makers in arable land management. Full article

Breeding programs often overlook the use of root traits. Therefore, we investigated the relevance of sorghum root traits in explaining its adaptation to combined drought and heat stress (CDHS). Six (i.e., three pre-release lines + three checks) sorghum genotypes were established at two low-altitude (i.e., <600 masl) locations with a long-term history of averagely very high temperatures in the beginning of the summer season, under two management (i.e., CDHS and well-watered (WW)) regimes. At each location, the genotypes were laid out in the field using a randomized complete block design (RCBD) replicated two times. Root trait data, namely root diameter (RD), number of roots (NR), number of root tips (NRT), total root length (TRL), root depth (RDP), root width (RW), width–depth ratio (WDR), root network area (RNA), root solidity (RS), lower root area (LRA), root perimeter (RP), root volume (RV), surface area (SA), root holes (RH) and root angle (RA) were gathered using the RhizoVision Explorer software during the pre- and post-flowering stage of growth. RSA traits differentially showed significant (p < 0.05) correlations with grain yield (GY) at pre- and post-flowering growth stages and under CDHS and WW conditions also revealing genotypic variation estimates exceeding 50% for all the traits. Regression models varied between pre-flowering (p = 0.013, R² = 47.15%, R² Predicted = 29.32%) and post-flowering (p = 0.000, R² = 85.64%, R² Predicted = 73.30%) growth stages, indicating post-flowering as the optimal stage to relate root traits to yield performance. RD contributed most to the regression model at post-flowering, explaining 51.79% of the 85.64% total variation. The Smith–Hazel index identified ICSV111IN and ASAREACA12-3-1 as superior pre-release lines, suitable for commercialization as new varieties. The study demonstrated that root traits (in particular, RD, RW, and RP) are linked to crop performance under CDHS conditions and should be incorporated in breeding programs. This approach may accelerate genetic gains not only in sorghum breeding programs, but for other crops, while offering a nature-based breeding strategy for stress adaptation in crops. Full article

The review summarizes the historical and current research on perennial grain breeding in Russia within the context of growing global interest in perennial crops. N.V. Tsitsin’s pioneering work in the 1930s produced the first wheat–wheatgrass amphiploids, which demonstrated the capacity to regrow after harvest and survive for 2–3 years. Subsequent research at the Main Botanical Garden in Moscow focused on characterizing Tsitsin’s material, selecting superior germplasm, and expanding genetic diversity through new cycles of hybridization and selection. This work led to the development of a new crop species, Trititrigia, and the release of cultivar ‘Pamyati Lyubimovoy’ in 2020, designed for dual-purpose production of high-quality grain and green biomass. Intermediate wheatgrass (Thinopyrum intermedium) is native to Russia, where several forage cultivars have been released and cultivated. Two large-grain cultivars (Sova and Filin) were developed from populations provided by the Land Institute and are now grown by farmers. Perennial rye was developed through interspecific crosses between Secale cereale and S. montanum, demonstrating persistence for 2–3 years with high biomass production and grain yields of 1.5–2.0 t/ha. Hybridization between Sorghum bicolor and S. halepense resulted in two released cultivars of perennial sorghum used primarily for forage production under arid conditions. Russia’s agroclimatic diversity in agricultural production systems provides significant opportunities for perennial crop development. The broader scientific and practical implications of perennial crops in Russia extend to climate-resilient, sustainable agriculture and international cooperation in this emerging field. Full article

Sorghum is a versatile crop that serves as a major source of food, feed, fodder and biofuel globally. Lignin content in sorghum affects multiple important traits, including lodging resistance, forage digestibility and the efficiency of bioenergy production. However, the genetic regulation of lignin content in sorghum remains poorly understood. In this study, we combined transcriptomic and comparative genomic approaches to uncover the genetic network underlying lignin biosynthesis in sorghum. Through comparative genomic analysis, we identified 104 candidate genes involved in lignin biosynthesis. Transcriptome analysis of four sorghum accessions with contrasting lignin contents identified 6132 differentially expressed genes with an enrichment of genes related to phenylpropanoid biosynthesis and cell wall biogenesis. The 104 lignin biosynthesis candidates were significantly enriched (p-value < 0.01) in these differentially expressed genes, with most differentially expressed candidate genes related to monolignol biosynthesis and polymerization being up-regulated in high-lignin accessions. These up-regulated genes are related to all key enzymes involved in lignin biosynthesis, suggesting that the elevated lignin content in these accessions results from a collective increase in enzyme activity. Sequence analysis revealed a significant reduction in genetic diversity across lignin biosynthesis genes in cultivated sorghum compared to wild sorghum. Moreover, selection signals during domestication were identified in 30 lignin biosynthesis genes, 22 of which were differentially expressed, further supporting the functional relevance of these differentially expressed genes in lignin biosynthesis. Overall, our findings uncover the lignin biosynthesis gene network in sorghum and offer potential targets for future functional studies and trait manipulation. Full article

The sorghum aphid (Melanaphis sacchari (Zehntner, 1897)), a globally destructive pest, severely compromises sorghum yield and quality. This study compared aphid-resistant (HX133) and aphid-susceptible (HX37) sorghum (Sorghum bicolor (L.) Moench) cultivars, revealing that HX133 significantly suppressed aphid proliferation through repellent and antibiotic effects, while aphid populations increased continuously in HX37. Transcriptome analysis identified 2802 differentially expressed genes (DEGs, 45.9% upregulated) in HX133 at 24 h post-infestation, in contrast with only 732 DEGs (21% upregulated) in HX37. Pathway enrichment highlighted shikimate-mediated phenylpropanoid/flavonoid biosynthesis and glutathione metabolism as central to HX133’s defense response, alongside photosynthesis-related pathways common to both cultivars. qRT-PCR validation confirmed activation of the shikimate pathway in HX133, driving the synthesis of dhurrin—a cyanogenic glycoside critical for aphid resistance—and other tyrosine-derived metabolites (e.g., benzyl isoquinoline alkaloids, tocopherol). These findings demonstrate that HX133 employs multi-layered metabolic regulation, particularly dhurrin accumulation, to counteract aphid infestation, whereas susceptible cultivars exhibit limited defense induction. This work provides molecular targets for enhancing aphid resistance in sorghum breeding programs. Full article

Biogas slurry (BGS), a nutrient-rich by-product of anaerobic digestion, presents a promising opportunity for sustainable agriculture on sandy soils. This review explores the agronomic potential of using BGS for improving sorghum’s (Sorghum bicolor) productivity by enhancing soil fertility and the nutrient availability. It focuses on the sources and properties of BGS, its application methods, and their effects on the soil nutrient dynamics and crop productivity. The findings indicate that BGS improves the soil health and crop yields, offering an eco-friendly alternative to synthetic fertilizers, especially in resource-limited settings. Despite these benefits, research gaps persist, including the need for long-term field trials, the optimization of application strategies for sandy soils, and comprehensive economic evaluations. Additionally, concerns such as nutrient imbalances, phosphorus accumulation, and slurry composition variability must be addressed. This review recommends standardizing BGS nutrient profiling and adopting site-specific management practices to maximize its agronomic benefits and environmental safety. Integrating BGS into sustainable soil fertility programs could contribute significantly to achieving agricultural resilience and circular economy goals. Full article

Molybdenum fertilization represents a viable alternative for improving forage quality, potentially complementing or enhancing the effects of nitrogen fertilization. This study aimed to determine whether foliar or soil application of molybdenum would increase the crude protein content and digestibility of sorghum cultivated as a monoculture or intercropped with cowpea. The first experiment followed a 2 × 2 + 2 factorial design, including two application methods (foliar or soil), two cropping systems (monoculture or intercropping), and two additional control treatments (with and without molybdenum). In the second experiment, a split-plot design was used to assess the effects of molybdenum fertilization on the in situ digestibility of sorghum from monoculture and intercropping systems. Molybdenum fertilization increased the levels of crude protein, total carbohydrates, and soluble fractions. It also enhanced the disappearance rate, potential degradability, and effective degradability of sorghum, regardless of the application method or cropping system. Foliar or soil application of molybdenum is recommended to optimize the crude protein content and in situ digestibility of sorghum cultivated either as a monoculture or intercropped with cowpea. Full article

Water scarcity in semiarid regions represents a critical challenge for sustainable agriculture, reducing the availability of forage and affecting livestock systems. The reuse of treated wastewater offers an environmentally friendly alternative to meet water and nutrient needs, supporting the principles of the circular economy. Sweet sorghum, with its remarkable tolerance to abiotic stress, represents a resilient crop option. Evaluating its agronomic and industrial responses to different depths of irrigation using reclaimed water is essential for improving resource-efficient agricultural practices in water-limited environments. This study evaluated the effects of different irrigation regimes with treated wastewater on the growth, productivity, and water use efficiency of sweet sorghum grown in a semiarid region of Brazil. The experiment was conducted in a randomized complete block design, with five irrigation regimes ranging from 50% to 150% of crop evapotranspiration (ETc) and four replications. Irrigation was carried out with treated wastewater using a drip irrigation system. Growth parameters, fresh biomass, water use efficiency, and soluble solids content (°Brix) were analyzed in two consecutive harvests (main and ratoon crop). Deficit irrigation regimes (50% and 75% of ETc) resulted in higher water use efficiency and higher °Brix, whereas regimes above 100% of ETc reduced water use efficiency and biomass productivity. The ratoon crop showed greater sensitivity to water management, with significant productivity responses under irrigation around 100% of ETc. The first harvest was more productive in terms of fresh biomass and plant growth. Reclaimed water is a sustainable and efficient strategy for cultivating sweet sorghum in semiarid regions. Deficit irrigation regimes can be technically viable for maximizing water use efficiency and production quality, while proper irrigation management is crucial to avoiding losses associated with excessive water application. Full article

Sugarcane bagasse-derived biochars, produced at 350 °C (B350) and 600 °C (B600), were evaluated for their capacity to modify the sorption behavior of the herbicide sulfentrazone (SFZ) in Red–Yellow Latosol (RYL) and to serve as carriers for its controlled release. Batch sorption experiments indicated that SFZ exhibits low affinity for soil and undergoes sorption–desorption hysteresis. Adding B350 biochar (up to 0.30%) did not significantly affect the herbicide sorption, whereas B600 enhanced its retention. Sequential desorption assays were conducted by incorporating SFZ either directly into the soil or into the biochars, which were subsequently blended into the soil (at 0.15% w/w). The SFZ desorbed more rapidly from the soil than from the biochars, suggesting that the pyrogenic material has potential for modulating herbicide release. Phytotoxicity assessments using Sorghum bicolor confirmed that only SFZ incorporated into B350 (at 0.15% w/w) retained herbicidal efficacy comparable to its direct application in soil. These findings underscore the potential of B350 biochar as a controlled-release carrier for SFZ without compromising its weed control effectiveness. Full article