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Keywords = V. vinifera

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14 pages, 3744 KB  
Article
Genome-Wide Analysis of Grapevine Ascorbate Oxidase Genes Identifies VaAAO7 in Vitis amurensis as a Positive Regulator of Botrytis cinerea Resistance
by Yawen Shen, Zhenfeng Yang, Liwei Zheng, Jiangli Shi, Jian Jiao, Miaomiao Wang, Kunxi Zhang, Pengbo Hao, Yujie Zhao, Yu Liu, Liu Cong, Tuanhui Bai, Chunhui Song, Ran Wan and Xianbo Zheng
Horticulturae 2025, 11(10), 1211; https://doi.org/10.3390/horticulturae11101211 - 8 Oct 2025
Viewed by 237
Abstract
Ascorbate oxidases (AAOs) are key regulators of extracellular redox homeostasis and plant stress responses, but their roles in grapevine defense remain unclear. Here, we performed a genome-wide analysis and characterization of the AAO gene family in grapevine Vitis amurensis, identifying 10 VaAAO [...] Read more.
Ascorbate oxidases (AAOs) are key regulators of extracellular redox homeostasis and plant stress responses, but their roles in grapevine defense remain unclear. Here, we performed a genome-wide analysis and characterization of the AAO gene family in grapevine Vitis amurensis, identifying 10 VaAAO genes that are unevenly distributed across six chromosomes, with notable clustering on chromosome 7. Promoter analysis revealed multiple phytohormone- and stress-responsive cis-elements (e.g., ARE, STRE, and TCA-element) and transcription factor binding sites (e.g., MYC/MYB, and WRKY), suggesting involvement in redox- and stress-related signaling pathways. Analysis of previously published transcriptomic data under Botrytis cinerea infection identified VaAAO7 as a key pathogen-responsive gene. VaAAO7 was rapidly induced by H2O2, and its transient ectopic overexpression in susceptible V. vinifera ‘Red Globe’ leaves significantly reduced lesion development. Together, these results demonstrate that VaAAO7 functions as a positive regulator of B. cinerea resistance and highlight its potential for genetic engineering to enhance systemic defense and develop disease-resistant grapevine cultivars. Full article
(This article belongs to the Collection New Insights into Developmental Biology of Fruit Trees)
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15 pages, 3124 KB  
Article
Effects of an Inter-Row Reflective Ground Film on Technological Quality and Phenolic Composition of ‘Pinot Noir’ Grapes in Southern Chile
by Ariel Muñoz-Alarcón, Marjorie Reyes-Díaz, Ignacio Serra, Jorge González-Villagra, Nicolás Carrasco-Catricura, Fanny Pirce and Alejandra Ribera-Fonseca
Horticulturae 2025, 11(9), 1144; https://doi.org/10.3390/horticulturae11091144 - 20 Sep 2025
Viewed by 609
Abstract
Climate change has promoted the expansion of viticulture toward southern Chile. However, in regions like La Araucanía, low heat accumulation and high rainfall often limit ripening and phenolic development in Vitis vinifera L. grapes. To address this, the use of reflective ground films [...] Read more.
Climate change has promoted the expansion of viticulture toward southern Chile. However, in regions like La Araucanía, low heat accumulation and high rainfall often limit ripening and phenolic development in Vitis vinifera L. grapes. To address this, the use of reflective ground films has been proposed to enhance light interception by the canopy. This study evaluated the effect of reflective ground film on the technological and phenolic quality of cv. ‘Pinot Noir’ grapes. The trial was conducted using three treatments: (1) control without film, (2) reflective ground film installed at the onset of veraison (FV), and (3) reflective ground film installed at 80% veraison (F80V). A randomized complete block design with four replicates per treatment was used. At harvest, total soluble solids (TSS), total acidity, pH, yield, total phenols, and anthocyanins were measured. The FV treatment increased reflected light by up to 60% and significantly enhanced TSS (7.3%), total phenols (7.2%), and anthocyanins (69.3%) compared to the control. No significant differences were observed in acidity, pH, or yield. The results indicate that installing reflective ground film at veraison improves ripening and phenolic accumulation in cold climate vineyards. Full article
(This article belongs to the Special Issue Climate Change and Adaptive Modern Strategies in Viticulture)
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27 pages, 5735 KB  
Article
Targeting Oxidative Stress and Inflammation with Vitis vinifera Leaf Extract: A Combined Experimental and Computational Pharmacological Study
by Sanja Djakovic, Marina Nikolic, Ivan Srejovic, Nikola Nedeljkovic, Marko Karovic, Jovana Bradic, Marijana Andjic, Vladimir Jakovljevic and Milos Nikolic
Future Pharmacol. 2025, 5(3), 52; https://doi.org/10.3390/futurepharmacol5030052 - 14 Sep 2025
Viewed by 398
Abstract
Objectives: Our study aimed to examine the antioxidative and anti-inflammatory potential of the lyophilized aqueous leaf extract of Vitis vinifera. Methods: The antioxidant capacity of the extract was evaluated using the DPPH and FRAP assays. The in vivo phase of [...] Read more.
Objectives: Our study aimed to examine the antioxidative and anti-inflammatory potential of the lyophilized aqueous leaf extract of Vitis vinifera. Methods: The antioxidant capacity of the extract was evaluated using the DPPH and FRAP assays. The in vivo phase of the study included 40 male Wistar albino rats. One half of the animals were used to induce the carrageenan model of acute inflammation, while the other half were used for examination of the extract effect on the redox state. Rats from the experimental group drank tap water containing 150 mg/kg Vitis vinifera extract for 14 days, while control animals received saline at the same volume. The molecular docking studies of polyphenols present in the leaf extract were conducted in AutoDock Vina. Results: In vitro assessment of the antioxidative capacity of the applied extract revealed significant free radical scavenging activity (IC50 value 11.63 µg/mL), along with a pronounced ferric reducing ability (0.143 at 700 nm). Moreover, animal treatment with the extract led to significant paw edema inhibition (30.34%, 35.06%, and 41.54% in the second, third, and fourth hours, respectively) and to pro-oxidative marker reduction. Additionally, Vitis vinifera extract significantly increased catalase activity and glutathione levels. The in silico results showed that rutin binds to cyclooxygenase 1 (−8.2 kcal/mol) and 2 (−8.3 kcal/mol), as well as to antioxidant enzymes (catalase: −8.6 kcal/mol, SOD: −7.4 kcal/mol), indicating its key role in mediating the biological activity of the tested extract. Conclusions: This study highlights the significant antioxidant and anti-inflammatory potential of V. vinifera lyophilized aqueous leaf extract from the Serbian market, supported by both in vivo and in silico analyses. Full article
(This article belongs to the Special Issue Recent Advances in the Discovery of Anti-Inflammatory Compounds)
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24 pages, 2366 KB  
Article
Comparative Analysis of Cabernet Sauvignon (Vitis vinifera L.) and Kober 5BB (V. berlandieri × V. riparia) Root Transcriptomes Reveals Multiple Processes Associated with Drought Tolerance in Grapevines
by Canan Yüksel Özmen, Funda Yılmaz Baydu and Ali Ergül
Horticulturae 2025, 11(9), 1092; https://doi.org/10.3390/horticulturae11091092 - 10 Sep 2025
Viewed by 457
Abstract
Grapevine cultivars (Vitis vinifera L.) generally exhibit relatively high tolerance to drought stress. In contrast, the drought tolerance of other Vitis species and their hybrids used as rootstocks differs considerably. In order to attain a better understanding of the molecular basis of [...] Read more.
Grapevine cultivars (Vitis vinifera L.) generally exhibit relatively high tolerance to drought stress. In contrast, the drought tolerance of other Vitis species and their hybrids used as rootstocks differs considerably. In order to attain a better understanding of the molecular basis of drought tolerance in grapevine, we conducted a comparative transcriptomic analysis of roots of drought-stressed Cabernet Sauvignon (CS, Vitis vinifera L.) and rootstock of Kober 5BB (V. berlandieri × V. riparia) using the Affymetrix Vitis Genome Array Version 2.0. We identified 1279 (745 upregulated and 534 downregulated) and 1925 (807 upregulated and 118 downregulated) differentially expressed genes in 5BB and CS. Numerous genes that are putatively involved in aquaporins, proline-rich protein, reactive oxygen species, osmoprotection, and lipid transfer were differentially expressed in response to drought stress in both genotypes. When gene ontology analyses were examined, it was observed that CS and 5BB genotypes were associated with the highest number of similar genes in both the molecular function (protein binding, catalytic activity, and DNA binding) and the biological process (metabolic process and translation) categories. The identification of different regulated genes between 5BB and CS roots is expected to help advance our understanding of molecular mechanisms operating during drought stress in grapevine roots. Full article
(This article belongs to the Special Issue Advances in Rootstocks for Grape Production)
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20 pages, 1163 KB  
Article
Biochar Application Methods Matter: Biochemical and Enological Responses of an Italian Field-Grown Grapevine (Vitis vinifera L.) Using Solid and Liquid Formulations
by Riccardo Fedeli, Silvia Celletti and Stefano Loppi
Agronomy 2025, 15(9), 2124; https://doi.org/10.3390/agronomy15092124 - 4 Sep 2025
Viewed by 1252
Abstract
Viticulture is increasingly seeking sustainable practices that enhance grape quality while reducing reliance on synthetic inputs. Among bio-based strategies, biochar has attracted growing interest for its potential to improve soil fertility and influence plant metabolism. However, its effects can vary depending on formulation [...] Read more.
Viticulture is increasingly seeking sustainable practices that enhance grape quality while reducing reliance on synthetic inputs. Among bio-based strategies, biochar has attracted growing interest for its potential to improve soil fertility and influence plant metabolism. However, its effects can vary depending on formulation and application methods. This study evaluated the effects of the use of solid (SB) and liquid biochar (LB) on the biochemical and nutritional composition in leaves, berry skins, and must of a grapevine (Vitis vinifera L., cv. Sangiovese) cultivated in a vineyard in Tuscany (Italy). SB was applied once to the soil at 2.5% (w/w), while LB was applied five times/season at 10% (v/v) via fertigation. Results revealed formulation-specific effects on grapevine physiology and fruit composition. SB maintained leaf chlorophyll concentrations, increased total soluble proteins (+65%), total polyphenols (+57%), and tannin content (+33%) in berry skins and must, and reduced Cu and Zn. Conversely, LB reduced leaf chlorophyll concentrations (−24%) and nutrient contents (P, Fe, Cu, and Zn), but increased total flavonoids (+13%), antioxidant capacity (+20%), and vitamin C (+18%) in berry skins, alongside higher fructose and reducing sugars in musts. The findings highlight biochar’s potential as a bio-based input in viticulture, emphasizing the importance of formulation and application strategy. SB appears suited to long-term soil improvement and enhanced phenolic richness, while LB may modulate sugar metabolism for targeted enological outcomes. Full article
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16 pages, 3854 KB  
Article
Screening Reference Genes for Wine Grapes for Cultivation Under Low-Temperature Stress
by Pingli Song, Xindie Zhao, Na Wang, Baotian Wang, Jiayi Liang, Yuxin Zou, Mo Zhou, Menghan Yan, Jiani Miao, Manmei Hou and Ziyu Qin
Horticulturae 2025, 11(9), 1035; https://doi.org/10.3390/horticulturae11091035 - 2 Sep 2025
Viewed by 372
Abstract
The harsh, cold, and dry winters in northern China necessitate burying wine grapevines (Vitis vinifera) for winter protection. In this study, we screened for stably expressed reference genes in wine grapes (V. vinifera) under low-temperature stress at 4 °C [...] Read more.
The harsh, cold, and dry winters in northern China necessitate burying wine grapevines (Vitis vinifera) for winter protection. In this study, we screened for stably expressed reference genes in wine grapes (V. vinifera) under low-temperature stress at 4 °C (chilling) and −15 °C (freezing). A cold-resistant line “Hanniang 1301” and its cold-sensitive parent ‘Cabernet Sauvignon’ were treated at 4 °C and −15 °C for varying durations. Nineteen candidate reference genes were selected for qPCR analysis. Gene stability under chilling and freezing stress was evaluated using the following five algorithms: Delta CT (ΔCt), geNorm, NormFinder, BestKeeper, and RefFinder. The optimal reference genes under chilling (4 °C) and freezing (−15 °C) conditions were pairs with dual-reference combinations. However, the genes selected differed between chilling and sub-freezing temperatures. For chilling stress (4 °C), EF1α-1 and EF1α-2 were the most stable. Meanwhile, for freezing stress (−15 °C), GAPDH and Actin were optimal. We identified suitable reference genes for gene expression studies in wine grapes under low-temperature stress; this establishes a theoretical foundation for optimizing reference gene selection in plants under other abiotic stresses. Full article
(This article belongs to the Special Issue Grapevine Responses to Abiotic and Biotic Stresses)
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21 pages, 2603 KB  
Article
Targeted Recovery of Phenolic Antioxidants from Grape Stems: A Sequential Approach
by Violeta Jevtovic, Khulood Fahad Saud Alabbosh, Zoran Pržić, Jelena Nikolić, Reem Ali Alyami, Maha Raghyan Alshammari, Badriah Alshammari, Violeta Rakic, Odeh A. O. Alshammari and Milan Mitić
Molecules 2025, 30(17), 3546; https://doi.org/10.3390/molecules30173546 - 29 Aug 2025
Viewed by 743
Abstract
Grape stems are an abundant by-product of winemaking and a promising source of phenolic antioxidants representing an underutilized biomass within the circular economy. Seven Vitis vinifera L. cultivars were analysed by HPLC DAD, with Merlot (Me), Cabernet Sauvignon (CS) and Italian Riesling (IR) [...] Read more.
Grape stems are an abundant by-product of winemaking and a promising source of phenolic antioxidants representing an underutilized biomass within the circular economy. Seven Vitis vinifera L. cultivars were analysed by HPLC DAD, with Merlot (Me), Cabernet Sauvignon (CS) and Italian Riesling (IR) identified as the richest sources. This comparative screening provided the basis for a multi-index optimization of extraction. A 23 full factorial design (ethanol 30–60% v/v; 30–80 min; 25–65 °C) was used for optimization. The optimal green conditions—60% ethanol, 80 min, 65 °C—yielded 1.860 mg/g CA, 1.098 mg/g Q-gluc and 0.409 mg/g Q-glc, with the Merlot stems showing the highest extraction efficiency and Merlot consistently outperforming the other varieties. Kinetic modeling using an unsteady state diffusion model showed excellent agreement (R2 ≈ 0.99, RMS < 2%), suggesting a leaching-diffusion mechanism. The thermodynamic parameters confirmed an endothermic, spontaneous and irreversible process with ΔH° between 19.5 and 36.6 kJ/mol, ΔS° between 69.1 and 131.6 J/molK and ΔG° between −1.1 and −9.2 kJ/mol, depending on the compound and grape stem variety. This study shows that grape stems can be efficiently utilised as a sustainable source of phenolic antioxidants, with potential applications in the production of functional foods and dietary supplements. This integration highlights the novelty of the study and supports the valorization of grape stems in the framework of sustainability and the circular economy. Full article
(This article belongs to the Special Issue Antioxidant Activity of Plant Phenolics, 2nd Edition)
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20 pages, 1133 KB  
Article
Unconventional Material from In Vitro Plant Cell Cultures: Vitis labrusca var. Isabella Case Study
by Vanessa Dalla Costa, Anna Piovan, Paola Brun and Raffaella Filippini
Appl. Sci. 2025, 15(16), 9139; https://doi.org/10.3390/app15169139 - 19 Aug 2025
Viewed by 652
Abstract
Isabella, an ancient hybrid grape originating from Vitis labrusca and Vitis vinifera genotypes, is widely cultivated for various food products and is considered a superfood due to its nutritional profile and high polyphenol content. To overcome the unsustainability of intensive agriculture and establish [...] Read more.
Isabella, an ancient hybrid grape originating from Vitis labrusca and Vitis vinifera genotypes, is widely cultivated for various food products and is considered a superfood due to its nutritional profile and high polyphenol content. To overcome the unsustainability of intensive agriculture and establish a new route towards more sustainable and socially fair superfood production, this work validated the establishment of undifferentiated in vitro cultures of V. labrusca var. Isabella. Two callus cell lines have been obtained on two different solid media, exhibiting distinct morpho-chemical characteristics. The total phenolic content and antioxidant activity of the callus juices were statistically different in the two cell lines. The subsequent qualitative–quantitative LC-MS analysis revealed the presence of seven stilbenoid derivatives in one cell line and three in the other; likewise, the total stilbenoid content was statistically different between the two cell lines (5.76 and 23.24 µg/mL of juice in the two cell lines on the 28th day of growth). The Isabella cell cultures possess nutritionally valuable profiles. These results suggest that plant cell culture technology can be a sustainable and viable option for the production of complementary, added-value food materials. Full article
(This article belongs to the Special Issue Unconventional Raw Materials for Food Products, 2nd Edition)
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19 pages, 4395 KB  
Article
Morphometric Analysis Reveals New Data in the History of Vitis Cultivars
by José Javier Martín-Gómez, José Luis Rodríguez-Lorenzo, Francisco Emmanuel Espinosa-Roldán, Félix Cabello Sáenz de Santamaría, Gregorio Muñoz-Organero, Ángel Tocino and Emilio Cervantes
Plants 2025, 14(16), 2481; https://doi.org/10.3390/plants14162481 - 10 Aug 2025
Viewed by 555
Abstract
Seeds of different Vitis cultivars (V. vinifera subsp. vinifera) have an interesting diversity of shapes, ranging from the small seeds of high solidity and low aspect ratio in some species of Vitis and V. vinifera subsp. Sylvestris to other morphological types [...] Read more.
Seeds of different Vitis cultivars (V. vinifera subsp. vinifera) have an interesting diversity of shapes, ranging from the small seeds of high solidity and low aspect ratio in some species of Vitis and V. vinifera subsp. Sylvestris to other morphological types with elongated stalks, characteristic of the more recent cultivars, suggesting a transition with alterations in seed shape associated with groups of cultivars. J-index analysis is a morphometrical technique that measures the percentage similarity of seed images with geometric models. Three models based on the outlines of reference cultivars (a model based on the Spanish female cultivar Hebén; and mixed models for French and German Chenin and Gewürtztraminer, both related to Savagnin Blanc; and Regina dei Vigneti and Muscat Hamburg, related with the Muscat group) have been applied to select the average outlines (Aos) resembling these models from a collection of cultivars maintained at IMIDRA. Three groups resulted, called Hebén, Chenin, and Regina, with 15, 25, and 18 cultivars, respectively. Principal component analysis (PCA) with the Fourier coefficients of the Aos for these cultivars and seeds of other species of Vitis and V. vinifera subsp. sylvestris showed differences between groups. Specific Fourier coefficients were related with geometric properties of the seeds, circularity, roundness, aspect ratio, and solidity as well as with diverse measurements of curvature allowing to establish hypothesis about the change in geometric properties along the evolution of cultivars. Full article
(This article belongs to the Section Plant Development and Morphogenesis)
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12 pages, 1599 KB  
Article
Nanopore Workflow for Grapevine Viroid Surveillance in Kazakhstan: Bypassing rRNA Depletion Through Non-Canonical Priming
by Karlygash P. Aubakirova, Zhibek N. Bakytzhanova, Akbota Rakhatkyzy, Laura S. Yerbolova, Natalya P. Malakhova and Nurbol N. Galiakparov
Pathogens 2025, 14(8), 782; https://doi.org/10.3390/pathogens14080782 - 6 Aug 2025
Viewed by 563
Abstract
Grapevine (Vitis vinifera L.) cultivation is an important agricultural sector worldwide. Its expansion into new areas, like Kazakhstan, brings significant phytosanitary risks. Viroids, such as grapevine yellow speckle viroid 1 (GYSVd-1) and hop stunt viroid (HSVd), are RNA pathogens that threaten vineyard [...] Read more.
Grapevine (Vitis vinifera L.) cultivation is an important agricultural sector worldwide. Its expansion into new areas, like Kazakhstan, brings significant phytosanitary risks. Viroids, such as grapevine yellow speckle viroid 1 (GYSVd-1) and hop stunt viroid (HSVd), are RNA pathogens that threaten vineyard productivity. They can cause a progressive decline through latent infections. Traditional diagnostic methods are usually targeted and therefore not suitable for thorough surveillance. In contrast, modern high-throughput sequencing (HTS) methods often face challenges due to their high costs and complicated sample preparation, such as ribosomal RNA (rRNA) depletion. This study introduces a simplified diagnostic workflow that overcomes these barriers. We utilized the latest Oxford Nanopore V14 cDNA chemistry, which is designed to prevent internal priming, by substituting a targeted oligo(dT)VN priming strategy to facilitate the sequencing of non-polyadenylated viroids from total RNA extracts, completely bypassing the rRNA depletion step and use of random oligonucleotides for c DNA synthesis. This method effectively detects and identifies both GYSVd-1 and HSVd. This workflow significantly reduces the time, cost, and complexity of HTS-based diagnostics. It provides a powerful and scalable tool for establishing strong genomic surveillance and phytosanitary certification programs, which are essential for supporting the growing viticulture industry in Kazakhstan. Full article
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15 pages, 24657 KB  
Article
Identification and Genetic Analysis of Downy Mildew Resistance in Intraspecific Hybrids of Vitis vinifera L.
by Xing Han, Yihan Li, Zhilei Wang, Zebin Li, Nanyang Li, Hua Li and Xinyao Duan
Plants 2025, 14(15), 2415; https://doi.org/10.3390/plants14152415 - 4 Aug 2025
Viewed by 518
Abstract
Downy mildew caused by Plasmopara viticola is an important disease in grape production, particularly in the highly susceptible, widely cultivated Vitis vinifera L. Breeding for disease resistance is an effective solution, and V. vinifera intraspecific crosses can yield progeny with both disease resistance [...] Read more.
Downy mildew caused by Plasmopara viticola is an important disease in grape production, particularly in the highly susceptible, widely cultivated Vitis vinifera L. Breeding for disease resistance is an effective solution, and V. vinifera intraspecific crosses can yield progeny with both disease resistance and high quality. To assess the potential of intraspecific recurrent selection in V. vinifera (IRSV) in improving grapevine resistance to downy mildew and to analyze the pattern of disease resistance inheritance, the disease-resistant variety Ecolly was selected as one of the parents and crossed with Cabernet Sauvignon, Marselan, and Dunkelfelder, respectively, creating three reciprocal combinations, resulting in 1657 hybrid F1 progenies. The primary results are as follows: (1) significant differences in disease resistance among grape varieties and, significant differences in disease resistance between different vintages of the same variety were found; (2) the leaf downy mildew resistance levels of F1 progeny of different hybrid combinations conformed to a skewed normal distribution and showed some maternal dominance; (3) the degree of leaf bulbous elevation was negatively correlated with the level of leaf downy mildew resistance, and the correlation coefficient with the level of field resistance was higher; (4) five progenies with higher levels of both field and in vitro disease resistance were obtained. Intraspecific hybridization can improve the disease resistance of offspring through super-parent genetic effects, and Ecolly can be used as breeding material for recurrent hybridization to obtain highly resistant varieties. Full article
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16 pages, 8522 KB  
Article
Plant Extracts as Modulators of the Wound Healing Process—Preliminary Study
by Anna Herman, Aleksandra Leska, Patrycja Wińska and Andrzej Przemysław Herman
Int. J. Mol. Sci. 2025, 26(15), 7490; https://doi.org/10.3390/ijms26157490 - 2 Aug 2025
Viewed by 1672
Abstract
The treatment of chronic wounds is one of the most complex therapeutic problems of modern medicine. It leads to patients’ protracted recovery, generating high treatment costs. Herbal products may be useful in the treatment of chronic wounds via a wide range of pharmacological [...] Read more.
The treatment of chronic wounds is one of the most complex therapeutic problems of modern medicine. It leads to patients’ protracted recovery, generating high treatment costs. Herbal products may be useful in the treatment of chronic wounds via a wide range of pharmacological properties and multidirectional effects on the wound healing phases. The study aims to determine the ability of selected plant extracts to modulate the processes involved in wound healing. The antimicrobial (MIC, MBC, MFC) and antioxidant (ABTS, DPPH) activities, cytotoxicity (MTT test), scratch wound test, and collagen assay were tested. R. canina (MBC 0.39 mg/mL) and V. venifera (MBC 3.13 mg/mL) extracts had bactericidal activities against P. aeruginosa and S. aureus, respectively. The V. vinifera extract showed the highest antioxidant activity in both ABTS (EC50 0.078 mg/mL) and DPPH (EC50 0.005 mg/mL) methods. The percentage of wound closure observed for C. cardunculus, R. rosea, and R. canina extracts with HaCaT, and V. vinifera extract with Hs27 cells was set as 100%. V. vinifera extract (50 μg/mL) stimulated collagen synthesis 5.16 times more strongly than ascorbic acid. Our preliminary study showed that some plant extracts may be promising modulators of the wound healing process, although further in-depth studies are necessary to determine their effectiveness in the in vivo model. Full article
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15 pages, 466 KB  
Article
Metagenomic Profiling of the Grapevine Virome in Canadian Vineyards
by Bhadra Murthy Vemulapati, Kankana Ghoshal, Sylvain Lerat, Wendy Mcfadden-Smith, Mamadou L. Fall, José Ramón Úrbez-Torres, Peter Moffet, Ian Boyes, James Phelan, Lucas Bennouna, Debra L. Moreau, Mike Rott and Sudarsana Poojari
Agriculture 2025, 15(14), 1532; https://doi.org/10.3390/agriculture15141532 - 16 Jul 2025
Viewed by 708
Abstract
A high-throughput sequencing-based grapevine metagenomic survey was conducted across all grape-growing Canadian provinces (British Columbia, Ontario, Nova Scotia, and Québec) with the objective of better understanding the grapevine virome composition. In total, 310 composite grapevine samples representing nine Vitis vinifera red; five V. [...] Read more.
A high-throughput sequencing-based grapevine metagenomic survey was conducted across all grape-growing Canadian provinces (British Columbia, Ontario, Nova Scotia, and Québec) with the objective of better understanding the grapevine virome composition. In total, 310 composite grapevine samples representing nine Vitis vinifera red; five V. vinifera white; seven American–French red; and five white hybrid cultivars were analyzed. dsRNA, enriched using two different methods, was used as the starting material and source of viral nucleic acids in HTS. The virome status on the distribution and incidence in different regions and grapevine cultivars is addressed. Results from this study revealed the presence of 20 viruses and 3 viroids in the samples tested. Twelve viruses, which are in the regulated viruses list under grapevine certification, were identified in this survey. The major viruses detected in this survey and their incidence rates are GRSPaV (26% to 100%), GLRaV-2 (1% to 18%), GLRaV-3 (15% to 63%), GRVFV (0% to 52%), GRGV (0% to 52%), GPGV (3.3% to 77%), GFkV (1.5% to 31.6%), and GRBV (0% to 19.4%). This survey is the first comprehensive virome study using viral dsRNA and a metagenomics approach on grapevine samples from the British Columbia, Ontario, Nova Scotia, and Quebec provinces in Canada. Results from this survey highlight the grapevine virome distribution across four major grapevine-growing regions and their cultivars. The outcome of this survey underlines the need for strengthening current management options to mitigate the impact of virus spread, and the implementation of a domestic grapevine clean plant program to improve the sanitary status of the grapevine ecosystem. Full article
(This article belongs to the Section Crop Protection, Diseases, Pests and Weeds)
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16 pages, 1449 KB  
Article
Cloning, Expression and Functional Characterization of V. vinifera CAT2 Arginine Transporter
by Lorena Pochini, Teresa Maria Rosaria Regina, Maria Iolanda Cerbelli, Nicoletta Gallo, Federica Costantino, Michele Galluccio and Cesare Indiveri
Int. J. Mol. Sci. 2025, 26(13), 6259; https://doi.org/10.3390/ijms26136259 - 28 Jun 2025
Viewed by 476
Abstract
The amino acid membrane transporters of grape species take part in metabolic pathways that play crucial roles in nitrogen trafficking and in the synthesis of secondary metabolites. Therefore, identifying these amino acid transporters and defining their functional properties might have further applications in [...] Read more.
The amino acid membrane transporters of grape species take part in metabolic pathways that play crucial roles in nitrogen trafficking and in the synthesis of secondary metabolites. Therefore, identifying these amino acid transporters and defining their functional properties might have further applications in crop improvement and, hence, relevance to human nutrition. The VvCAT2 (Cation Amino acid Transporter) transporter cDNA has been isolated and cloned into a specific plasmid for over-expression in Escherichia coli. The expressed protein, after purification by Ni2+-chelating chromatography, has been functionally characterized in an experimental model of proteoliposomes by measuring the uptake of radiolabeled compounds. Arginine was revealed to be the best substrate, confirming the role of CAT2 in nitrogen trafficking in plant cells and within sub-cellular spaces, given its plausible localization in vacuoles. The transporter activity is modulated by pH, osmotic imbalance and ATP. The transport kinetics have been measured. Overall, the obtained data indicate the capacity of VvCAT2 in transporting arginine, making it a possible target for crop improvement with a relevance to human health. Full article
(This article belongs to the Section Biochemistry)
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14 pages, 7398 KB  
Article
Genome-Wide Identification and Expression Analysis of Aspartic proteases in Populus euphratica Reveals Candidates Involved in Salt Tolerance
by Peiyang He, Lifan Huang and Hanyang Cai
Plants 2025, 14(13), 1930; https://doi.org/10.3390/plants14131930 - 23 Jun 2025
Viewed by 594
Abstract
Aspartic proteases (APs) are among the four primary families of proteolytic enzymes found in plants, and they are essential for both stress response mechanisms and developmental activities. While the AP gene family has been studied in model plants like Arabidopsis, its characterization [...] Read more.
Aspartic proteases (APs) are among the four primary families of proteolytic enzymes found in plants, and they are essential for both stress response mechanisms and developmental activities. While the AP gene family has been studied in model plants like Arabidopsis, its characterization in woody species-particularly in extremophytes like Populus euphratica, remains limited. Moreover, the potential involvement of APs in salt tolerance mechanisms in trees is yet to be explored. In this research, 55 PeAPs were discovered and categorized into three distinct classes based on their conserved protein structures. The phylogenetic analysis revealed potential functions of AP genes derived from Arabidopsis thaliana, V. vinifera, and P. euphratica. Our findings indicate that PeAP possesses a well-conserved evolutionary background and contains numerous highly variable regions, making it an excellent candidate for the identification and systematic examination of woody trees. Additionally, motifs frequently found in aspartic proteases within the genome of P. euphratica may be linked to functional PeAPs. It appears that PeAPs are associated with specific gene functions. These genes are influenced by cis-elements, which may play a role in their responsiveness to phytohormone, stress adaptation maybe changed to these genes are regulated by cis-elements that may mediate their responsiveness to phytohormones, abiotic stress, and developmental cues. Our research offers the initial comprehensive analysis of the AP family in P. euphratica, emphasizing its potential functions in adapting to salt conditions. The findings uncover candidate PeAPs for genetic engineering to enhance salinity tolerance in woody crops. Full article
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