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20 Results Found

  • Article
  • Open Access
23 Citations
5,264 Views
17 Pages

12 November 2018

Non-canonical amino acids (ncAAs) are finding increasing use in basic biochemical studies and biomedical applications. The efficiency of ncAA incorporation is highly variable, as a result of competing system composition and codon context effects. The...

  • Article
  • Open Access
9 Citations
5,160 Views
14 Pages

The L-shape form of tRNA is maintained by tertiary interactions occurring in the core. Base changes in this domain can cause structural defects and impair tRNA activity. Here, we report on a method to safely engineer structural variations in this dom...

  • Article
  • Open Access
3 Citations
5,303 Views
16 Pages

Amber Extract Suppressed Mast Cell-Mediated Allergic Inflammation via the Regulation of Allergic Mediators—An In Vitro Study

  • Redoyan Refli,
  • Neng Tanty Sofyana,
  • Haruna Haeiwa,
  • Reiko Takeda,
  • Kazuma Okazaki,
  • Marie Sekita and
  • Kazuichi Sakamoto

The various clinical approaches for treating allergy-related diseases have shown modest progress in low side effects and improved clinical outcomes. Therefore, finding alternative anti-allergic agents is crucial. The present study explored the anti-a...

  • Communication
  • Open Access
7 Citations
6,204 Views
10 Pages

The orthogonal pyrrolysyl-tRNA synthetase/tRNACUA pair and their variants have provided powerful tools for expanding the genetic code to allow for engineering of proteins with augmented structure and function not present in Nature. To expedite the di...

  • Review
  • Open Access
40 Citations
16,781 Views
30 Pages

29 January 2019

The replication of a virus within its host cell involves numerous interactions between viral and cellular factors, which have to be tightly controlled in space and time. The intricate interplay between viral exploitation of cellular pathways and the...

  • Conference Report
  • Open Access
2 Citations
3,642 Views
4 Pages

Genetic Code Expansion (GCE) enables the encoding of amino acids with diverse chemical properties. This approach has tremendous potential to advance biological discoveries in basic research, medical, and industrial settings. Given the multiple techni...

  • Feature Paper
  • Article
  • Open Access
26 Citations
5,481 Views
18 Pages

22 September 2021

The Herpes Simplex Virus (HSV-1) immediate-early protein ICP22 interacts with cellular proteins to inhibit host cell gene expression and promote viral gene expression. ICP22 inhibits phosphorylation of Ser2 of the RNA polymerase II (pol II) carboxyl-...

  • Article
  • Open Access
33 Citations
6,922 Views
14 Pages

26 September 2018

Genetic code expansion has largely relied on two types of the tRNA—aminoacyl-tRNA synthetase pairs. One involves pyrrolysyl-tRNA synthetase (PylRS), which is used to incorporate various lysine derivatives into proteins. The widely used PylRS fr...

  • Article
  • Open Access
2 Citations
1,701 Views
10 Pages

5 December 2024

Amber is a fragile (in Angell’s classification) natural glass that has performed maturation processes over geological time. The terahertz dynamics of Baltic amber that was about 40 million years old were studied by terahertz time-domain spectroscopy...

  • Article
  • Open Access
1 Citations
2,574 Views
11 Pages

Traditionally, amber (Succinite) has been used to alleviate all types of pain, skin allergies, and headaches. However, no studies have been conducted on its antidiabetic and antioxidant effects. In this study, differentiated skeletal muscle C2C12 cel...

  • Article
  • Open Access
14 Citations
4,747 Views
18 Pages

Genetic code expansion has largely focused on the reassignment of amber stop codons to insert single copies of non-canonical amino acids (ncAAs) into proteins. Increasing effort has been directed at employing the set of aminoacyl tRNA synthetase (aaR...

  • Article
  • Open Access
2 Citations
3,805 Views
10 Pages

Protein Modification Employing Non-Canonical Amino Acids to Prepare SUMOylation Detecting Bioconjugates

  • Alexander C. Williard,
  • Hannah J. Switzer,
  • Christina A. Howard,
  • Rui Yin,
  • Brent L. Russell,
  • Ritwik Sanyal,
  • Shaun Yu,
  • Trinity M. Myers,
  • Brian M. Flood and
  • Douglas D. Young
  • + 1 author

Protein modification with non-canonical amino acids (ncAAs) represents a useful technology to afford homogenous samples of bioconjugates with site-specific modification. This technique can be directly applied to the detection of aberrant SUMOylation...

  • Article
  • Open Access
18 Citations
3,946 Views
12 Pages

Generation of Premature Termination Codon (PTC)-Harboring Pseudorabies Virus (PRV) via Genetic Code Expansion Technology

  • Tong-Yun Wang,
  • Guo-Ju Sang,
  • Qian Wang,
  • Chao-Liang Leng,
  • Zhi-Jun Tian,
  • Jin-Mei Peng,
  • Shu-Jie Wang,
  • Ming-Xia Sun,
  • Fan-Dan Meng and
  • Yan-Dong Tang
  • + 2 authors

10 March 2022

Despite many efforts and diverse approaches, developing an effective herpesvirus vaccine remains a great challenge. Traditional inactivated and live-attenuated vaccines always raise efficacy or safety concerns. This study used Pseudorabies virus (PRV...

  • Article
  • Open Access
3 Citations
3,919 Views
11 Pages

Rice Nudix Hydrolase OsNUDX2 Sanitizes Oxidized Nucleotides

  • Yuki Kondo,
  • Kazuhide Rikiishi and
  • Manabu Sugimoto

13 September 2022

Nudix hydrolase (NUDX) hydrolyzes 8-oxo-(d)GTP to reduce the levels of oxidized nucleotides in the cells. 8-oxo-(d)GTP produced by reactive oxygen species (ROS) is incorporated into DNA/RNA and mispaired with adenine, causing replicational and transc...

  • Review
  • Open Access
69 Citations
13,600 Views
17 Pages

More than two decades ago a general method to genetically encode noncanonical or unnatural amino acids (NAAs) with diverse physical, chemical, or biological properties in bacteria, yeast, animals and mammalian cells was developed. More than 200 NAAs...

  • Article
  • Open Access
14 Citations
4,902 Views
12 Pages

Identification and Characterization of a New Splicing Variant of Prokineticin 2

  • Roberta Lattanzi,
  • Daniela Maftei,
  • Martina Vincenzi,
  • Maria Rosaria Fullone and
  • Rossella Miele

7 February 2022

Prokineticin 2 (PROK2) is a secreted bioactive peptide that regulates a variety of biological responses via two GPCRs, the prokineticin receptors (PROKRs). The aim of this study was to characterize a new alternatively spliced product of the prok2 gen...

  • Article
  • Open Access
1,131 Views
15 Pages

Kujigamberol Inhibits IFN-γ and IL-2 mRNA Expression and NFATc2 Binding to Their Promoters in Response to a Phorbol Ester and Ionomycin Stimulation

  • Tanpitcha Yodweerapong,
  • Yuto Ueno,
  • Rikako Yamaguchi,
  • Piimwara Yarangsee,
  • Ken-ichi Kimura and
  • Takao Kataoka

Kujigamberol, a dinorlabdane compound isolated from Kuji amber, exerts multiple biological effects, including anti-allergic and anti-inflammatory activities. The present study demonstrated that kujigamberol inhibited cytokine production by T cells. I...

  • Article
  • Open Access
3,283 Views
18 Pages

Probing the Conformational States of Thimet Oligopeptidase in Solution

  • Marcelo F. M. Marcondes,
  • Gabriel S. Santos,
  • Fellipe Bronze,
  • Mauricio F. M. Machado,
  • Kátia R. Perez,
  • Renske Hesselink,
  • Marcel P. de Vries,
  • Jaap Broos and
  • Vitor Oliveira

Thimet oligopeptidase (TOP) is a metallopeptidase involved in the metabolism of oligopeptides inside and outside cells of various tissues. It has been proposed that substrate or inhibitor binding in the TOP active site induces a large hinge-bending m...

  • Article
  • Open Access
2 Citations
1,900 Views
9 Pages

Genetic Incorporation of Dansylalanine in Human Ferroportin to Probe the Alternating Access Mechanism of Iron Transport

  • Matteo Amadei,
  • Antonella Niro,
  • Maria Rosaria Fullone,
  • Rossella Miele,
  • Fabio Polticelli,
  • Giovanni Musci and
  • Maria Carmela Bonaccorsi di Patti

Ferroportin (Fpn), a member of the major facilitator superfamily (MFS) of transporters, is the only known iron exporter found in mammals and plays a crucial role in regulating cellular and systemic iron levels. MFSs take on different conformational s...