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Search Results (119)

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19 pages, 4945 KB  
Article
Covalent Organic Framework-Based Nanomembrane with Co-Immobilized Dual Enzymes for Micropollutant Removal
by Junda Zhao, Guanhua Liu, Xiaobing Zheng, Liya Zhou, Li Ma, Ying He, Xiaoyang Yue and Yanjun Jiang
Nanomaterials 2025, 15(18), 1431; https://doi.org/10.3390/nano15181431 - 18 Sep 2025
Viewed by 333
Abstract
Biocatalytic nanomembranes have emerged as promising platforms for micropollutant remediation, yet their practical application is hindered by limitations in removal efficiency and operational stability. This study presents an innovative approach for fabricating highly stable and efficient biocatalytic nanomembranes through the co-immobilization of horseradish [...] Read more.
Biocatalytic nanomembranes have emerged as promising platforms for micropollutant remediation, yet their practical application is hindered by limitations in removal efficiency and operational stability. This study presents an innovative approach for fabricating highly stable and efficient biocatalytic nanomembranes through the co-immobilization of horseradish peroxidase (HRP) and glucose oxidase (GOx) within a covalent organic framework (COF) nanocrystal. Capitalizing on the dynamic covalent chemistry of COFs during their self-healing and self-crystallization processes, we achieved simultaneous enzyme immobilization and framework formation. This unique confinement strategy preserved enzymatic activity while significantly enhancing stability. HRP/GOx@COF biocatalytic membrane was prepared through the loading of immobilized enzymes (HRP/GOx@COF) onto a macroporous polymeric substrate membrane pre-coated with a polydopamine (PDA) adhesive layer. At HRP and GOx dosages of 4 mg and 4.5 mg, respectively, and a glucose concentration of 5 mM, the removal rate of bisphenol A (BPA) reached 99% through the combined functions of catalysis, adsorption, and rejection. The BPA removal rate of the biocatalytic membrane remained high under both acidic and alkaline conditions. Additionally, the removal rate of dyes with different properties exceeded 88%. The removal efficiencies of doxycycline hydrochloride, 2,4-dichlorophenol, and 8-hydroxyquinoline surpassed 95%. In this study, the enzyme was confined in the ordered and stable COF, which endowed the biocatalytic membrane with good stability and reusability over multiple batch cycles. Full article
(This article belongs to the Section Environmental Nanoscience and Nanotechnology)
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21 pages, 3228 KB  
Article
Synergistic DES–Microwave Fractionation of Agri-Food Biomasses in a Zero-Waste Perspective
by Luca Carlomaria Pariani, Franca Castiglione, Gianmarco Griffini, Letizia Anna Maria Rossato, Eleonora Ruffini, Alberto Strini, Davide Tessaro, Stefano Turri, Stefano Serra and Paola D’Arrigo
Molecules 2025, 30(17), 3588; https://doi.org/10.3390/molecules30173588 - 2 Sep 2025
Viewed by 1143
Abstract
The growing demand for sustainable biorefinery approaches calls for efficient, environmentally benign strategies to valorize agricultural residues and ensure their complete utilization. This study explores the combination of deep eutectic solvents (DESs) and microwave heating technology as a greener process for the selective [...] Read more.
The growing demand for sustainable biorefinery approaches calls for efficient, environmentally benign strategies to valorize agricultural residues and ensure their complete utilization. This study explores the combination of deep eutectic solvents (DESs) and microwave heating technology as a greener process for the selective fractionation of agri-food waste residues in a zero-waste perspective. Within this framework, five representative biomasses were thoroughly investigated, namely brewer’s spent grain, raw and parboiled rice husks, rapeseed cakes, and hemp hurds. DES formulation was selected for its ability to solubilize and separate lignocellulosic components, enabling the recovery of a polysaccharide-rich fraction, lignin, and bioactive compounds. DES extraction was performed using both microwave heating and conventional batch heating, enabling a direct comparison of the two methods, the optimization of a more sustainable fractionation process, and the maximization of yields while preserving the functional integrity of the recovered fractions. A comprehensive characterization of the separated fractions was carried out, revealing that the two fractionation methods do not yield significant differences in the composition of the primary components. Moreover, a 13C CP-MAS NMR analysis of the recovered lignins demonstrates how this analytical technique is a real fingerprint for the biomass source. The results demonstrate the great potential of microwave DES-mediated fractionation as a mild, tunable, and sustainable alternative to conventional methods, aligning with green chemistry principles and opening new approaches for the full valorization of waste byproducts Full article
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21 pages, 2216 KB  
Article
Microfluidic Assembly of Poly(glutamic acid) Nanogels Through SPAAC Click Chemistry
by Pasquale Mastella and Stefano Luin
Pharmaceutics 2025, 17(9), 1150; https://doi.org/10.3390/pharmaceutics17091150 - 2 Sep 2025
Viewed by 672
Abstract
Background/Objectives: Nanogels (NGs) are promising carriers for drug delivery due to their tunable size, biocompatibility, and capability to encapsulate sensitive molecules. However, conventional batch synthesis often lacks control over key parameters, such as size distribution and encapsulation efficiency. This study aimed to develop [...] Read more.
Background/Objectives: Nanogels (NGs) are promising carriers for drug delivery due to their tunable size, biocompatibility, and capability to encapsulate sensitive molecules. However, conventional batch synthesis often lacks control over key parameters, such as size distribution and encapsulation efficiency. This study aimed to develop a microfluidic platform for the reproducible synthesis of poly(α-glutamic acid) (PGA)-based NGs using strain-promoted azide–alkyne cycloaddition (SPAAC) click chemistry and to investigate the effects of flow parameters on the physicochemical properties of nanogels. Methods: Functionalized PGAs (with azide and DBCO) were co-injected into a microfluidic system within a flux of acetone to form NGs via SPAAC. Flow rate ratios (FRR) and total flow rates were systematically screened at 25 °C, with tests at 50 °C. We evaluated the particle size, polydispersity index (PDI), zeta potential, and encapsulation efficiency (EE%) of doxorubicin-loaded NGs. Results: NGs with tunable sizes ranging from ~50 nm to >170 nm and low PDI (<0.1 in optimal conditions) were obtained. Higher FRR and total flow rates yielded smaller and more uniform NGs. Doxorubicin loading did not affect the nanogel size and uniformity, and in some cases, it improved them. The EE% reached up to ~65%, and ~40% for the best formulations. Elevated temperature improved the characteristics of drug-loaded nanogels at intermediate solvent ratios. Compared to batch synthesis, the microfluidic process offers enhanced reproducibility and size control. Conclusions: Microfluidic SPAAC synthesis enables precise and scalable fabrication of PGA NGs with controllable size and drug loading. This platform supports future integration of on-chip purification and monitoring for clinical nanomedicine applications. Full article
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17 pages, 5055 KB  
Article
Removal of Copper (II) from Aqueous Solutions Using Silica Xerogel as Sorbent: Adsorption Properties and Mechanism
by Ammaeva Shanaz, Isaev Abdulgalim, Schubert Richard, Pankov Ilya and Talanov Valery
Colloids Interfaces 2025, 9(5), 58; https://doi.org/10.3390/colloids9050058 - 1 Sep 2025
Viewed by 712
Abstract
The contamination of water resources with heavy metals creates problems for using it as a source of drinking water. Adsorption is one of the most promising methods for heavy metal ion removal from natural and wastewater. The process of removing copper (II) from [...] Read more.
The contamination of water resources with heavy metals creates problems for using it as a source of drinking water. Adsorption is one of the most promising methods for heavy metal ion removal from natural and wastewater. The process of removing copper (II) from aqueous solutions using SiO2 xerogel as an adsorbent has been studied. The xerogel was thoroughly characterized by transmission electron microscopy (TEM), energy-dispersive X-ray spectroscopy (EDX), X-ray diffraction (XRD), X-ray photoelectron spectroscopy (XPS), and argon adsorption–desorption isotherms, revealing an amorphous structure with a high surface area (~347 m2/g) and uniform mesoporosity (2–14 nm pore size). The surface chemistry, dominated by silanol groups, was confirmed by XPS analysis. The adsorption process is influenced by electrostatic interactions between the positively charged Cu(II) ions and the negatively charged surface groups, with the optimal performance near neutral pH. Batch adsorption experiments demonstrated that the silica xerogel effectively removes Cu(II) ions from aqueous solutions, with removal efficiency exceeding 99% at pH values above 4.0. The maximum adsorption capacity of copper (II) ions on SiO2 xerogel is 67.5 mg/L. Full article
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80 pages, 962 KB  
Review
Advancements in Hydrogels: A Comprehensive Review of Natural and Synthetic Innovations for Biomedical Applications
by Adina-Elena Segneanu, Ludovic Everard Bejenaru, Cornelia Bejenaru, Antonia Blendea, George Dan Mogoşanu, Andrei Biţă and Eugen Radu Boia
Polymers 2025, 17(15), 2026; https://doi.org/10.3390/polym17152026 - 24 Jul 2025
Cited by 7 | Viewed by 4842
Abstract
In the rapidly evolving field of biomedical engineering, hydrogels have emerged as highly versatile biomaterials that bridge biology and technology through their high water content, exceptional biocompatibility, and tunable mechanical properties. This review provides an integrated overview of both natural and synthetic hydrogels, [...] Read more.
In the rapidly evolving field of biomedical engineering, hydrogels have emerged as highly versatile biomaterials that bridge biology and technology through their high water content, exceptional biocompatibility, and tunable mechanical properties. This review provides an integrated overview of both natural and synthetic hydrogels, examining their structural properties, fabrication methods, and broad biomedical applications, including drug delivery systems, tissue engineering, wound healing, and regenerative medicine. Natural hydrogels derived from sources such as alginate, gelatin, and chitosan are highlighted for their biodegradability and biocompatibility, though often limited by poor mechanical strength and batch variability. Conversely, synthetic hydrogels offer precise control over physical and chemical characteristics via advanced polymer chemistry, enabling customization for specific biomedical functions, yet may present challenges related to bioactivity and degradability. The review also explores intelligent hydrogel systems with stimuli-responsive and bioactive functionalities, emphasizing their role in next-generation healthcare solutions. In modern medicine, temperature-, pH-, enzyme-, light-, electric field-, magnetic field-, and glucose-responsive hydrogels are among the most promising “smart materials”. Their ability to respond to biological signals makes them uniquely suited for next-generation therapeutics, from responsive drug systems to adaptive tissue scaffolds. Key challenges such as scalability, clinical translation, and regulatory approval are discussed, underscoring the need for interdisciplinary collaboration and continued innovation. Overall, this review fosters a comprehensive understanding of hydrogel technologies and their transformative potential in enhancing patient care through advanced, adaptable, and responsive biomaterial systems. Full article
23 pages, 1658 KB  
Article
Valorization of a Lanthanum-Modified Natural Feedstock for Phosphorus Recovery from Aqueous Solutions: Static and Dynamic Investigations
by Hamed Al-Nadabi, Salah Jellali, Wissem Hamdi, Ahmed Al-Raeesi, Fatma Al-Muqaimi, Afrah Al-Tamimi, Ahmed Al-Sidairi, Ahlam Al-Hanai, Waleed Al-Busaidi, Khalifa Al-Zeidi, Malik Al-Wardy and Mejdi Jeguirim
Materials 2025, 18(14), 3383; https://doi.org/10.3390/ma18143383 - 18 Jul 2025
Viewed by 531
Abstract
This work investigates, for the first time, the application of a modified natural magnetite material with 35% of lanthanum for phosphorus (P) recovery from synthetic and actual wastewater under both static (batch) and dynamic (continuous stirred tank reactor (CSTR)) conditions. The characterization results [...] Read more.
This work investigates, for the first time, the application of a modified natural magnetite material with 35% of lanthanum for phosphorus (P) recovery from synthetic and actual wastewater under both static (batch) and dynamic (continuous stirred tank reactor (CSTR)) conditions. The characterization results showed that the natural feedstock mainly comprises magnetite and kaolinite. Moreover, the lanthanum-modified magnetite (La-MM) exhibited more enhanced textural, structural, and surface chemistry properties than the natural feedstock. In particular, its surface area (82.7 m2 g−1) and total pore volume (0.160 cm3 g−1) were higher by 86.6% and 255.5%, respectively. The La-MM efficiently recovered P in batch mode under diverse experimental settings with an adsorption capacity of 50.7 mg g−1, which is significantly greater than that of various engineered materials. It also maintained high efficiency even when used for the treatment of actual wastewater, with an adsorption capacity of 47.3 mg g−1. In CSTR mode, the amount of P recovered from synthetic solutions and real wastewater decreased to 33.8 and 10.2 mg g−1, respectively, due to the limited contact time. The phosphorus recovery process involves mainly electrostatic attraction over a wide pH interval, complexation, and precipitation as lanthanum phosphates. This investigation indicates that lanthanum-modified natural feedstocks from magnetite deposits can be regarded as promising materials for P recovery from aqueous solutions. Full article
(This article belongs to the Special Issue Adsorption Materials and Their Applications (2nd Edition))
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30 pages, 11102 KB  
Article
Impact of Temperature and Depth of Discharge on Commercial Nickel Manganese Oxide and Lithium Iron Phosphate Batteries After Three Years of Aging
by Matthieu Dubarry, Andrew Pearson, Keiran Pringle, Youssof Shekibi and Steven Pas
Batteries 2025, 11(7), 239; https://doi.org/10.3390/batteries11070239 - 22 Jun 2025
Viewed by 1178
Abstract
Accurate cell selection is primordial to ensure battery safety and longevity. Unfortunately, because of path dependence, finding out which cells are best adapted to a specific application is not straightforward and might require significant testing. This work provides the analysis of three years [...] Read more.
Accurate cell selection is primordial to ensure battery safety and longevity. Unfortunately, because of path dependence, finding out which cells are best adapted to a specific application is not straightforward and might require significant testing. This work provides the analysis of three years of aging, both cycling and calendar, for two batches of commercial cells of different chemistries. Using design of experiments and analysis of variance, this work showed that the impact of temperature and depth of discharge, both at the beginning and end of discharge, are chemistry dependent. Moreover, an analysis of the cells’ degradation modes also showcased different pathways depending on the positive electrode chemistry and the type of aging. Full article
(This article belongs to the Special Issue 10th Anniversary of Batteries: Battery Diagnostics and Prognostics)
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14 pages, 2703 KB  
Article
Evaluation of Heavy Metal Adsorption Efficiency of Biochars Derived from Agricultural Waste
by Velyana Georgieva, Lenia Gonsalvesh, Sonia Mileva, Mariyana Hamanova and Hyusein Yemendzhiev
Biomass 2025, 5(2), 33; https://doi.org/10.3390/biomass5020033 - 3 Jun 2025
Cited by 2 | Viewed by 1870
Abstract
This study investigates the potential of biochars derived from agricultural waste biomass for the removal of heavy metal ions from aqueous solutions. Biochars were produced via slow pyrolysis at 793 K using almond shells (AS), walnut shells (WS), pistachio shells (PS), and rice [...] Read more.
This study investigates the potential of biochars derived from agricultural waste biomass for the removal of heavy metal ions from aqueous solutions. Biochars were produced via slow pyrolysis at 793 K using almond shells (AS), walnut shells (WS), pistachio shells (PS), and rice husks (RH) as feedstocks. The physicochemical properties and adsorption performance of the resulting materials were evaluated with respect to Cd(II), Mn(II), Co(II), Ni(II), Zn(II), total Iron (Fetot), total Arsenic (Astot), and total Chromium (Crtot) in model solutions. Surface morphology, porosity, and surface chemistry of the biochars were characterized by scanning electron microscopy (SEM), nitrogen adsorption at 77 K (for specific surface area and pore structure), Fourier-transform infrared spectroscopy (FTIR), and determination of the point of zero charge (pHpzc). Based on their textural properties, biochars derived from WS, PS, and AS were classified as predominantly microporous, while RH-derived biochar exhibited mesoporous characteristics. The highest Brunauer–Emmett–Teller (SBET) surface area was recorded for PS biochar, while RH biochar showed the lowest. The pistachio shell biochar exhibited the highest specific surface area (440 m2/g), while the rice husk biochar was predominantly mesoporous. Batch adsorption experiments were conducted at 25 °C, with an adsorbent dose of 3 g/L and a contact time of 24 h. The experiments in multicomponent systems revealed removal efficiencies exceeding 87% for all tested metals, with maximum values reaching 99.9% for Cd(II) and 97.5% for Fetot. The study highlights strong correlations between physicochemical properties and sorption performance, demonstrating the suitability of these biochars as low-cost sorbents for complex water treatment applications. Full article
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13 pages, 5518 KB  
Article
Remediating Per- and Polyfluoroalkyl Substances (PFAS)-Contaminated Water by Foam Fractionation and Electrochemical Oxidation
by Steve Comfort, Amanda Araújo da Silva, Jessica Powell, Rebecca Cain, Ashleigh McGreer and Renato F. Dantas
Environments 2025, 12(6), 185; https://doi.org/10.3390/environments12060185 - 31 May 2025
Viewed by 2008
Abstract
Per- and polyfluoroalkyl substances (PFASs) are a family of synthetic chemicals that were used to improve the quality of several commercial products by making them resistant to heat, oil, stains, and grease. By containing a fluorinated carbon tail and a hydrophilic head (-COOH, [...] Read more.
Per- and polyfluoroalkyl substances (PFASs) are a family of synthetic chemicals that were used to improve the quality of several commercial products by making them resistant to heat, oil, stains, and grease. By containing a fluorinated carbon tail and a hydrophilic head (-COOH, -SO3H), PFASs act as surfactants that are attracted to bubble–water interfaces. Foam fractionation is the process of facilitating PFAS–air bubble interactions for the purpose of removing contaminants from tainted water. In this paper, we report on the use of foam fractionation and electrochemical oxidation (EO) under stirred batch conditions (200 mL) to remediate PFAS-contaminated water. We used radiolabeled PFOA (perfluorooctanoic acid; 14C-PFOA) as a representative surrogate to quickly screen treatment variables of flow rate, pH, temperature, and soap mass. Using radiolabeled PFASs eliminated the possibility of cross-contamination and greatly reduced analytical costs and processing time. The results showed that foam fractionation can remove 80 to 90 percent of PFOA from water within 30 min and that 90 to 100 percent of the PFOA in the concentrated foamate can be oxidized via electrochemical oxidation (-14COOH → 14CO2). We also tested the efficacy of the combined foam fractionation–EO treatment in natural waters by spiking 14C-PFOA and a cosolvent (CTAB) into PFAS-contaminated water obtained from two field sites with divergent PFAS concentrations and differing sources of PFAS contamination (natural drainage ditch vs. WWTP). Using a larger-scale tank (3500 mL), we observed that foam fractionation was 90% effective in removing 14C-PFOA from the WWTP effluent but only 50% effective for the drainage ditch water. Regardless, EO was highly effective in oxidizing 14C-PFOA in the foamate from both sources with half-lives (T1/2) ranging from 8.7 to 15 min. While water chemistry differences between source waters may have influenced foam fractionation and require additional investigations, tank experiments provide the first proof-of-concept experiment using 14C-PFASs that foam fractionation and electrochemical oxidation can be used in tandem to treat PFAS-contaminated water. Full article
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26 pages, 6627 KB  
Article
Synthesis of Lanthanum-Modified Natural Magnetite: Characterization and Valorization for Phosphorus Recovery from Aqueous Solutions
by Hamed Al-Nadabi, Salah Jellali, Wissem Hamdi, Afrah Al-Tamimi, Ahmed Al-Raeesi, Ahmed Al-Sidairi, Waleed Al-Busaidi, Ahlam Al-Hanai, Khalifa Al-Zeidi, Malik Al-Wardy and Mejdi Jeguirim
Materials 2025, 18(10), 2283; https://doi.org/10.3390/ma18102283 - 14 May 2025
Cited by 1 | Viewed by 629
Abstract
In this research work, a natural sample from an Omani magnetite (MG) deposit was used for the synthesis of a magnetite decorated with ferrihydrite (MG-Fh), and two lanthanum (La)-modified materials at mass percentages of 5% (MG-Fh-La-5) and 15% (MG-Fh-La-15). These materials were first [...] Read more.
In this research work, a natural sample from an Omani magnetite (MG) deposit was used for the synthesis of a magnetite decorated with ferrihydrite (MG-Fh), and two lanthanum (La)-modified materials at mass percentages of 5% (MG-Fh-La-5) and 15% (MG-Fh-La-15). These materials were first characterized using various analytical techniques. Then, their phosphorus (P) recovery efficacy from aqueous solutions was studied in batch mode under a wide range of experimental conditions. The characterization results show that compared to the raw feedstock, MG-Fh, MG-Fh-La-5, and especially MG-Fh-La-15 have improved structural, textural, and surface chemistry properties. Adsorption tests indicate that due to the deposition of high contents of lanthanum oxides on its surface, the MG-La-15 exhibited a large P uptake capacity (34.5 mg g−1), which is significantly superior to those determined for MG-La-5 (24.3 mg g−1), MG-Fh (12.4 mg g−1), and various engineered materials published in the literature. Moreover, these materials retain an interesting ability to recover P from real wastewater with a highest adsorbed mass of 27.3 mg g−1, observed for MG-La-15. The P recovery seems to involve both physical and chemical mechanisms, including electrostatic interactions and complexation. This research work shows that La-modified magnetite can be considered a promising and eco-friendly material for P recovery from liquid effluents. Full article
(This article belongs to the Special Issue Adsorption Materials and Their Applications (2nd Edition))
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19 pages, 7332 KB  
Article
Synthesis of Curcumin Derivatives via Knoevenagel Reaction Within a Continuously Driven Microfluidic Reactor Using Polymeric Networks Containing Piperidine as a Catalyst
by Naresh Killi, Katja Rumpke and Dirk Kuckling
Gels 2025, 11(4), 278; https://doi.org/10.3390/gels11040278 - 8 Apr 2025
Viewed by 1996
Abstract
The use of organo-catalysis in continuous-flow reactor systems is gaining attention in medicinal chemistry due to its cost-effectiveness and reduced chemical waste. In this study, bioactive curcumin (CUM) derivatives were synthesized in a continuously operated microfluidic reactor (MFR), using piperidine-based polymeric networks as [...] Read more.
The use of organo-catalysis in continuous-flow reactor systems is gaining attention in medicinal chemistry due to its cost-effectiveness and reduced chemical waste. In this study, bioactive curcumin (CUM) derivatives were synthesized in a continuously operated microfluidic reactor (MFR), using piperidine-based polymeric networks as catalysts. Piperidine methacrylate and piperidine acrylate were synthesized and subsequently copolymerized with complementary monomers (MMA or DMAA) and crosslinkers (EGDMA or MBAM) via photopolymerization, yielding different polymeric networks. Initially, batch reactions were optimized for the organo-catalytic Knoevenagel condensation between CUM and 4-nitrobenzaldehyde, under various conditions, in the presence of polymer networks. Conversion was assessed using offline 1H NMR spectroscopy, revealing an increase in conversion with enhanced swelling properties of the polymer networks, which facilitated greater accessibility of catalytic sites. In continuous-flow MFR experiments, optimized polymer gel dots exhibited superior catalytic performance, achieving a conversion of up to 72%, compared to other compositions. This improvement was attributed to the enhanced swelling in the reaction mixture (DMSO/methanol, 7:3 v/v) at 40 °C over 72 h. Furthermore, the MFR system enabled the efficient synthesis of a series of CUM derivatives, demonstrating significantly higher conversion rates than traditional batch reactions. Notably, while batch reactions required 90% catalyst loading in the gel, the MFR system achieved a comparable or superior performance with only 50% catalyst, resulting in a higher turnover number. These findings underscore the advantages of continuous-flow organo-catalysis in enhancing catalytic efficiency and sustainability in organic synthesis. Full article
(This article belongs to the Special Issue Gels: 10th Anniversary)
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23 pages, 15163 KB  
Review
The Role of Flow Chemistry on the Synthesis of Pyrazoles, Pyrazolines and Pyrazole-Fused Scaffolds
by Catarina M. Correia, Artur M. S. Silva and Vera L. M. Silva
Molecules 2025, 30(7), 1582; https://doi.org/10.3390/molecules30071582 - 2 Apr 2025
Cited by 1 | Viewed by 4425
Abstract
Nitrogen-containing heterocycles are fundamental scaffolds in organic chemistry, particularly due to their prevalence in pharmaceuticals, agrochemicals and materials science. Among them, five-membered rings, containing two nitrogen atoms in adjacent positions—such as pyrazoles, pyrazolines and indazoles—are especially significant due to their versatile biological activities [...] Read more.
Nitrogen-containing heterocycles are fundamental scaffolds in organic chemistry, particularly due to their prevalence in pharmaceuticals, agrochemicals and materials science. Among them, five-membered rings, containing two nitrogen atoms in adjacent positions—such as pyrazoles, pyrazolines and indazoles—are especially significant due to their versatile biological activities and structural properties, which led to the search for greener, faster and more efficient methods for their synthesis. Conventional batch synthesis methods, while effective, often face challenges related to reaction efficiency, scalability and safety. Flow chemistry has emerged as a powerful alternative, offering enhanced control over reaction parameters, improved safety profiles and opportunities for scaling up synthesis processes efficiently. This review explores the impact of flow chemistry on the synthesis of these pivotal heterocycles, highlighting its advantages over the conventional batch methods. Although indazoles have a five-membered ring fused with a benzene ring, they will also be considered in this review due to their biological relevance. Full article
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17 pages, 2056 KB  
Article
Screening and Application of DNA Markers for Novel Quality Consistency Evaluation in Panax ginseng
by Siyuan Cai, Xuejiao Liao, Yidan Xi, Yang Chu, Shuang Liu, Hang Su, Deqiang Dou, Jiang Xu and Shuiming Xiao
Int. J. Mol. Sci. 2025, 26(6), 2701; https://doi.org/10.3390/ijms26062701 - 17 Mar 2025
Cited by 1 | Viewed by 699
Abstract
Quality control remains a challenge in traditional Chinese medicine (TCM). This study introduced a novel genetic-based quality control method for TCM. Genetic variations in ginseng were evaluated across whole-genome, chloroplast genome, and ITS2 DNA barcode dimensions. Significant genetic variations were found in whole-genome [...] Read more.
Quality control remains a challenge in traditional Chinese medicine (TCM). This study introduced a novel genetic-based quality control method for TCM. Genetic variations in ginseng were evaluated across whole-genome, chloroplast genome, and ITS2 DNA barcode dimensions. Significant genetic variations were found in whole-genome comparison, leading to the use of inter-simple sequence repeat markers to assess the genetic diversity of ginseng decoction pieces (PG), garden ginseng (GG), and ginseng under forest (FG). Fingerprints of ginseng samples revealed instability within some batches. These evaluations were transformed into information entropy to calculate the size of Hardy–Weinberg equilibrium population (HWEP). FG had significantly higher genetic and chemical minimum HWEP than GG (p < 0.05). Notably, a significant positive correlation was observed between the minimum HWEP for genetics and for chemistry (r = 0.857, p = 0.014). Genetic polymorphism analysis of ginseng has the potential to evaluate chemical quality consistency, offering a new method to ensure quality consistency in TCM. Full article
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10 pages, 361 KB  
Article
Excited-State Forces with GW-BSE Through the Hellmann–Feynman Theorem
by Marah Jamil Alrahamneh, Iogann Tolbatov and Paolo Umari
Int. J. Mol. Sci. 2025, 26(5), 2306; https://doi.org/10.3390/ijms26052306 - 5 Mar 2025
Viewed by 1023
Abstract
We introduce a method for calculating the atomic forces of a molecular or extended system in an excited state described through the GW-BSE approach within the Tamm–Dancoff approximation. The derivative of the so-called excitonic Hamiltonian is obtained by finite differences and its application [...] Read more.
We introduce a method for calculating the atomic forces of a molecular or extended system in an excited state described through the GW-BSE approach within the Tamm–Dancoff approximation. The derivative of the so-called excitonic Hamiltonian is obtained by finite differences and its application to the excited state is made possible through the use of suitable projectors. The scheme is implemented with the batch representation of the electron–hole amplitudes, allowing for avoiding sums over empty one-particle orbitals. The geometries of small excited molecules, namely, CO and CH2O, were in excellent agreement with the results from quantum chemistry methods. Full article
(This article belongs to the Section Materials Science)
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30 pages, 1684 KB  
Article
Efficient GPU Implementation of the McMurchie–Davidson Method for Shell-Based ERI Computations
by Haruto Fujii, Yasuaki Ito, Nobuya Yokogawa, Kanta Suzuki, Satoki Tsuji, Koji Nakano, Victor Parque and Akihiko Kasagi
Appl. Sci. 2025, 15(5), 2572; https://doi.org/10.3390/app15052572 - 27 Feb 2025
Cited by 1 | Viewed by 1391
Abstract
Quantum chemistry offers the formal machinery to derive molecular and physical properties arising from (sub)atomic interactions. However, as molecules of practical interest are largely polyatomic, contemporary approximation schemes such as the Hartree–Fock scheme are computationally expensive due to the large number of electron [...] Read more.
Quantum chemistry offers the formal machinery to derive molecular and physical properties arising from (sub)atomic interactions. However, as molecules of practical interest are largely polyatomic, contemporary approximation schemes such as the Hartree–Fock scheme are computationally expensive due to the large number of electron repulsion integrals (ERIs). Central to the Hartree–Fock method is the efficient computation of ERIs over Gaussian functions (GTO-ERIs). Here, the well-known McMurchie–Davidson method (MD) offers an elegant formalism by incrementally extending Hermite Gaussian functions and auxiliary tabulated functions. Although the MD method offers a high degree of versatility to acceleration schemes through Graphics Processing Units (GPUs), the current GPU implementations limit the practical use of supported values of the azimuthal quantum number. In this paper, we propose a generalized framework capable of computing GTO-ERIs for arbitrary azimuthal quantum numbers, provided that the intermediate terms of the MD method can be stored. Our approach benefits from extending the MD recurrence relations through shells, batches, and triple-buffering of the shared memory, and ordering similar ERIs, thus enabling the effective parallelization and use of GPU resources. Furthermore, our approach proposes four GPU implementation schemes considering the suitable mappings between Gaussian basis and CUDA blocks and threads. Our computational experiments involving the GTO-ERI computations of molecules of interest on an NVIDIA A100 Tensor Core GPU (NVIDIA, Santa Clara, CA, USA) have revealed the merits of the proposed acceleration schemes in terms of computation time, including up to a 72× improvement over our previous GPU implementation and up to a 4500× speedup compared to a naive CPU implementation, highlighting the effectiveness of our method in accelerating ERI computations for both monatomic and polyatomic molecules. Our work has the potential to explore new parallelization schemes of distinct and complex computation paths involved in ERI computation. Full article
(This article belongs to the Special Issue Data Structures for Graphics Processing Units (GPUs))
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