Search Results (3,007)

The integration of bacterial biotechnology into construction and geotechnical practices is redefining approaches to material sustainability, infrastructure longevity, and environmental resilience. Over the past two decades, research activity in construction biotechnology has expanded rapidly, with more than 350 publications between 2000 and 2024 and a five-fold increase in annual output since 2020. Beyond bibliometric growth, technical studies have demonstrated the remarkable performance of bacterial systems: for example, microbial-induced calcium carbonate precipitation (MICP) can increase the compressive strength of treated soils by 60–70% and reduce permeability by more than 90% in field-scale trials. In concrete applications, bacterial self-healing has been shown to seal cracks up to 0.8 mm wide and improve water tightness by 70–90%. Similarly, biofilm-mediated corrosion barriers can extend the durability of reinforced steel by significantly reducing chloride ingress, while bacterial biopolymers such as xanthan gum and curdlan enhance soil cohesion and water retention in eco-grouting and erosion control. The novelty of this review lies in its interdisciplinary scope, integrating microbiological mechanisms, materials science, and engineering practice to highlight how bacterial processes can transition from laboratory models to real-world applications. By combining quantitative evidence with critical assessment of scalability, biosafety, and regulatory challenges, this paper provides a comprehensive framework that positions construction biotechnology as a transformative pathway towards low-carbon, adaptive, and resilient infrastructure systems. Full article

Morphogenetic factors (MTFs) are specialized plant genes and transcription factors that play pivotal roles in embryogenesis and organogenesis. This review focuses on their functions in plant development regulation and their applications in plant biotechnology and modern breeding. Common challenges in transformation and regeneration were discussed, along with successful case studies demonstrating improved regeneration capacity and transgene stability in rice (Oryza sativa), soybean (Glycine max), rapeseed (Brassica napus), tomato (Solanum lycopersicum) and other less common crops and plant model organisms. These improvements were achieved through the utilization of key developmental MTFs such as WUCHEL, BABY BOOM, GRF-GIF, etc. The principles of designing genetic constructs with MTFs are explored, including promoter selection and regulatory elements, as well as their synergistic effects with phytohormones like auxins and cytokinins for optimizing in vitro morphogenesis. Current limitations in MTF expression and strategies to overcome them are analyzed. The article highlights recent advances, including MTFs potential for developing stress-resistant, high-yielding cultivars. Key discussion points include the discovery of novel morphogens, their application to recalcitrant species, and prospects for expanding the range of easily transformable and regenerable crops. Future directions involve developing universal transformation protocols and integrating morphogens with precision genome editing technologies, offering new opportunities for agriculture and global food security. Full article

Saccorhiza polyschides is a fast-growing pioneer and opportunistic canopy-forming false-kelp belonging to the order Phyllariaceae (Ochrophyta, Phaeophyceae). The species plays a pivotal ecological role in temperate marine ecosystems and exhibits promising potential for diverse biotechnological applications. The species, however, is under growing pressure from anthropogenic disturbance. This review synthesises current knowledge regarding the biology and geographic distribution of the species, with particular emphasis on its distinctive morphology and ultrastructural features. The species’ complex life cycle and marked seasonal productivity are examined concerning environmental variables. Furthermore, we explore the ecological interactions of the species, including its role as a habitat-forming species and its responses to anthropogenic stressors such as climate change and habitat degradation. Special attention is given to the state of knowledge regarding the bioactive compounds and associated bioactivities of S. polyschides. This includes a detailed examination of the species’ phytochemical constituents, extraction and fractionation strategies, as well as in vitro and in vivo bioactivities, and potential biotechnological applications. By integrating findings from recent literature and identifying methodological and knowledge gaps, this paper seeks to provide a comprehensive understanding of S. polyschides as an emergent marine bioresource and to propose directions for future research and sustainable valorisation. Full article

This paper examines various aspects of maize plant height. Firstly, it emphasizes that maize is a significant food and forage crop with considerable research significance, and that its plant height is influenced by multiple factors, including biotic elements such as genes and plant hormones, as well as abiotic factors such as soil, water, and climate. Secondly, the paper explores the complex relationship between maize plant height and yield, noting that moderate plant height can improve photosynthetic efficiency, reduce lodging risk, and enhance yield, although it may also affect kernel quality. Additionally, the paper reviews the application of modern biotechnological methods in maize plant height research, such as genome-wide linkage analysis, gene editing, transgenic technology, and epigenetic studies, which aid in elucidating the genetic mechanisms underlying plant height. Finally, it outlines future research directions for improving maize plant height and yield, highlighting key challenges that require urgent attention, such as the advancement of gene editing techniques, the integration of multiple biotechnologies, and strategies to address climate change, with the ultimate goal of achieving precision breeding for high-yielding, stress-resistant, and broadly adaptable maize varieties. Full article

High hydrostatic pressure (HHP) significantly modulates microbial metabolism, while chemical epigenetic modifiers are known to reactivate silent biosynthetic gene clusters and induce novel natural products. However, the mechanisms by which these epigenetic modifiers regulate fungal responses under differential pressure conditions, and how such regulation affects natural product biosynthesis, remain completely unexplored. Here, we investigated the hadal fungus Alternaria alternata CIEL23 isolated from 7332 m sediments in the Mariana Trench under epigenetic modifier treatment with contrasting pressures (0.1 MPa vs. 40 MPa). Our results revealed that epigenetic perturbations and high pressure significantly altered fungal phenotypes, gene expression, and secondary metabolite composition. Transcriptome-level analysis of epigenetic regulatory mechanisms under epigenetic modifiers in both pressure conditions (0.1 MPa and 40 MPa) demonstrated that the addition of epigenetic modifiers regulated MAPK pathway-related gene expression in response to the environment stimuli. Under dual stress conditions, the IG, CWI, and HOG branches of the MAPK pathway showed significantly altered activity patterns. These changes were associated with differential the regulation of genes related to hyphal growth, cell wall remodeling, cell cycle progression, and osmolyte synthesis, suggesting the coordinated modulation of multiple cellular processes. These findings provide the mechanistic link between epigenetic modification induced HHP-response changes and regulation in hadal fungi. Our study not only advances understanding of hadal fungal response to dual stressors but also unlocks new possibilities for harnessing their stress-driven metabolic versatility for biotechnological applications. Full article

Light-flavor Baijiu (LFB) is renowned for its distinct flavor and long history, with the microbial community structure of low-temperature Daqu (LTD) serving as a crucial saccharification fermenter that significantly influences the quality and flavor of Baijiu. With the rapid advancement of biotechnology, research on LTD has become more in-depth, focusing on the identification of core microorganisms and the construction of Synthetic Microbial Communities (SynComs), which have emerged as research hotspots. Core microorganisms play a vital role in fermentation and flavor development, while SynComs are artificially constructed microbial combinations designed to optimize fermentation and improve liquor quality. This paper provides a systematic overview of the core microorganisms associated with LTD and their identification methods, as well as the concepts, advantages, applications, and construction methodologies of SynComs. It compiles relevant research findings to offer a theoretical foundation for a deeper understanding of the brewing mechanism and further optimization of the LFB brewing process, along with insights into future research directions. Full article

Bacillus cereus AS_3 and Bacillus cereus AS_5 are bacterial endophytes isolated from sterilized leaves of the medical plant Alectra sessiliflora, which were previously identified using 16S rRNA sequencing. Here, we present the whole-genome sequencing and annotation of strains AS_3 and AS_5, the first genome report of Bacillus cereus strains from A. sessiliflora. The genome of strain AS_3 has 59 contigs, 5 503 542 bp draft circular chromosome, an N₅₀ of 211,274 bp, and an average G+C content of 35.2%; whereas strain AS_5 has 38 contigs, 5,510,121 bp draft circular chromosome, an N₅₀ of 536,033 bp, and an average G+C content of 35.2%. A total of 5679 protein-coding genes, 62 genes coding for RNAs, and 122 pseudogenes in the strain AS_3 genome were identified by the National Center for Biotechnology Information Prokaryotic Annotation pipeline, whereas a total of 5688 gene protein-coding genes were identified in AS_5, with 60 genes coding for RNAs and 120 pseudogenes. Phenotypic analysis and whole-genome sequencing analysis showed that AS_3 and AS_5 share similar characteristics, including Gram-positive, motile, rod-shaped, and endospore-forming have shown a high sequence similarity with Bacillus cereus, type strain ATCC 14579^T. Strains AS_3 and AS_5 had genomic digital DNA–DNA hybridization (dDDH) with the type strain Bacillus cereus ATCC 14579^T of 85.8% and 86%, respectively, and average nucleotide identities (ANIs) of 98% and 98.01%, respectively. Phylogenomic analysis confirmed that strains AS_3 and AS_5 share very similar genomic and phenotypic characteristics, and are closely related to the type strain Bacillus cereus type strain ATCC 14579^T, supporting their classification within the Bacillus cereus species. A total of 10 secondary metabolite gene clusters, including siderophore type petrobactin, terpene type molybdenum cofactor, non-ribosomal peptide synthetase (NRPS) type bacillibactin, and β-lactone type fengycin, were predicted using AntiSMASH software (version 5.0). Putative genes potentially involved in bioremediation and endophytic lifestyle were identified in the genome analysis. Genome sequencing of Bacillus cereus AS_3 and Bacillus cereus AS_5 has provided genomic information and demonstrated potential biotechnological applications. Full article

Microalgae are unicellular photosynthetic organisms with considerable genetic diversity and remarkable metabolic capacity, positioning them as sustainable cellular biorefineries. They can be cultivated in open or closed systems, influenced by physical and chemical variables such as light, temperature, and nutrient availability. These conditions modulate the synthesis of valuable biomolecules, including proteins, lipids, polysaccharides, and secondary metabolites. Microalgae are especially notable for their high protein content (up to 70% w/w in Spirulina sp.), polyunsaturated fatty acids (e.g., DHA and EPA), and β-glucans with bioactive properties. Choosing the correct extraction method (mechanical, enzymatic or combined) is very important to obtain and preserve the functionality of these compounds. Despite their biotechnological potential in functional foods, pharmaceuticals, and biofuels, industrial development faces challenges such as extraction efficiency, scalability, and regulatory approval. This review compiles current knowledge on the nutritional and bioactive potential of microalgae, highlights advances in extraction technologies and discusses their potential applications in health-oriented industrial innovation. Full article

Epigenetic regulation, particularly DNA methylation, plays a crucial role in plant adaptation to environmental stresses by modulating gene expression without altering the underlying DNA sequence. In response to major abiotic stresses such as salinity, drought, heat, cold, and heavy metal toxicity, plants undergo dynamic changes in DNA methylation patterns. These modifications are orchestrated by DNA methyltransferases and demethylases with variations depending on plant species, genetic background, and ontogenic phase. DNA methylation affects the expression of key genes involved in cellular, physiological, and metabolic processes essential for stress tolerance. Furthermore, it contributes to the establishment of stress memory, which can be transmitted across generations, thereby enhancing long-term plant resilience. The interaction of DNA methylation with other epigenetic mechanisms, including histone modifications, small RNAs, and chromatin remodeling, adds layers of regulatory complexity. Recent discoveries concerning N6-methyladenine have opened new avenues for understanding the epigenetic landscape in plant responses to abiotic stress. Overall, this review addresses the central role of DNA methylation in regulating plant stress responses and emphasizes its potential for application in crop improvement through epigenetic and advanced biotechnological approaches. Full article

Lactiplantibacillus pentosus is a lactic acid bacterium frequently detected in various fermented foods; however, the genomic traits related to its biotechnological potential have been underexplored. In this study, 34 catalase-negative isolates were obtained from pickled mustard greens, among which strain P7 exhibited the highest exopolysaccharide (EPS) yield (781.9 ± 14.7 mg/L) and was capable of growing in a chemically defined medium lacking riboflavin. Whole-genome sequencing revealed a 3,749,478 bp circular chromosome with 46.5% G + C content and 3389 protein-coding genes. A phylogenomic analysis identified P7 as L. pentosus. Functionally, 1 mg/mL EPS extracted from P7 demonstrated strong antioxidant activity, with DPPH and hydroxyl radical scavenging capacities of 89.8 ± 4.6% and 76.5 ± 9.5%, respectively. The use of 0.2 mg/mL EPS also protected Saccharomyces cerevisiae cells from oxidative stress. A comparative genomic analysis indicated the presence of nearly complete biosynthetic pathways for riboflavin, folate, and pyridoxine. High-performance liquid chromatography (HPLC) confirmed the production of 23.8 ± 0.4 µg/mL riboflavin, 36.6 ± 0.6 µg/mL folic acid, and 0.42 ± 0.02 µg/mL pyridoxine in the culture supernatant, which have not been previously reported. Additionally, strain P7 produced 91.2 ± 12.3 g/L of lactic acid after 24 h of incubation. These results support the potential of L. pentosus P7 as a candidate for industrial applications in the production of EPS, B-group vitamins, and lactic acid. Full article

Earth hosts a remarkable diversity of life, with oceans covering over 70% of its surface and supporting the greatest abundance and variety of species, including a vast range of seaweeds. Among these, red seaweeds (Rhodophyta) represent the most diverse group and are particularly rich in bioactive compounds. Grateloupia turuturu Yamada and Porphyra umbilicalis Kütz. are two species with significant biotechnological and functional food potential. They contain high levels of phycobiliproteins, sulfated polysaccharides (e.g., carrageenan, agar, porphyran), mycosporine-like amino acids (MAAs), phenols, minerals, and vitamins, including vitamin B12 (rare among non-animal sources). Several analytical methods, such as spectrophotometry, chromatography, and mass spectrometry, have been used to characterize their chemical composition. In vitro and in vivo studies have demonstrated their antioxidant, anti-inflammatory, neuroprotective, immunostimulatory, anti-proliferative, and photoprotective effects. These bioactive properties support its application in the food, pharmaceutical, and cosmetic sectors. Given the growing demand for sustainable resources, these algae species stand out as promising candidates for aquaculture and the development of functional ingredients. Their incorporation into novel food products, such as snacks and fortified dairy and meat products, underscores their potential to support health-promoting diets. This review highlights G. turuturu and P. umbilicalis chemical richness, bioactivities, and applications, reinforcing their value as sustainable marine resources. Full article

Two-component systems (TCSs) are ubiquitous in bacteria and are central to their ability to sense and respond to diverse environmental and intracellular cues. Classically composed of a sensor histidine kinase and a cognate response regulator, TCSs control processes ranging from metabolism and development to virulence and antibiotic resistance. In addition to their biological roles, TCSs are garnering attention in synthetic biology and antimicrobial drug development. While canonical architectures have been extensively studied, increasing evidence highlights the remarkable diversity in their organization and regulation. Despite substantial progress, key questions remain regarding the prevalence and physiological relevance of non-canonical TCSs, the mechanisms ensuring signal fidelity, and the potential for engineering these systems. This review explores non-typical TCSs, focusing on their varied transcriptional regulation, alternative response regulator activities, varied control by phosphorylation, and negative control mechanisms. We discuss how bacteria manage signaling specificity among numerous TCSs through cross-talk, hierarchical interactions, and phosphorelay systems and how these features shape adaptive responses. By synthesizing current understanding and highlighting still existing knowledge gaps, this review offers a novel perspective on TCS diversity, indicating directions for future research and potential translational applications in biotechnology and medicine. Full article

Catalpa bungei C.A.Mey is an economically significant deciduous tree valued for timber production and landscaping applications. An efficient regeneration system is crucial for clonal propagation and serves as a foundation for future molecular breeding in C. bungei. This study established two in vitro regeneration pathways—indirect somatic embryogenesis and shoot organogenesis utilizing mature zygotic embryos as explants. Primary callus was induced from cotyledon, hypocotyl, and plumule explants. A high frequency (45.73%) of yellow-green compact callus was achieved on De-Klerk and Walton (DKW) medium supplemented with 2.0 mg/L 6-BA, 1.0 mg/L zeatin (ZT), and 0.1 mg/L NAA. Subsequent transfer to 1.5× Murashige and Skoog (MS) medium containing 1.5 mg/L 6-BA, 0.2 mg/L ZT, and 0.1 mg/L NAA yielded the highest embryogenic callus induction rate (16.67%). Embryogenic callus demonstrated bipotent potential, generating both adventitious shoots and somatic embryos under specific hormonal conditions. Histological analyses confirmed the typical developmental stages of somatic embryos, from globular to cotyledonary forms, validating the embryogenic origin of regenerated structures. Furthermore, hormone or osmotic additives such as abscisic acid (ABA), Phytagel, and polyethylene glycol 4000 (PEG4000) significantly enhanced somatic embryo induction, with Phytagel at 5.0 g/L achieving the highest rate (76.31%). For shoot organogenesis, the optimal hormonal combination of the 0.6 mg/L 6-BA, 0.4 mg/L KT, and 0.15 mg/L NAA achieved the highest bud induction rate (88.89%) and produced an average of 4.07 adventitious buds per explant. This study presents an efficient regeneration system for C. bungei, providing a practical platform for large-scale propagation and basis for biotechnological applications in woody plants. Full article

Three-dimensional bioprinting integrating living cells and bioactive materials enables the fabrication of scaffold structures supporting diverse cellular growth and metabolism. Microalgae are among the most promising microbial platforms for the construction of photosynthetic cell factories, while the current industrial-scale cultivation of microalgae remains predominantly dependent on traditional liquid submerged systems, imposing limitations on commercial viability due to both process and economic constraints. Encapsulation of microalgae within bioactive matrices combined with 3D bioprinting to fabricate customized structures has been explored to address the limitations of submerged cultivation, which are expected to expand microalgal applications and establish new research directions in microalgal biotechnology. This review analyzes both matrices and methods of 3D bioprinting, summarizing the advancement of microalgae-based 3D bioprinting into six main domains including living building materials, biophotovoltaics, photosynthetic biosynthesis, bioremediation, tissue engineering, and food engineering. Lastly, synthetic biology-informed perspectives are provided on future developments of 3D bioprinting technologies and their potential in microalgal research. Full article

Water quality in natural mineral springs is essential for sustainable use and conservation in the Amazon region. This study presents a hydrogeochemical characterization of 21 springs in the Peruvian Tropical Highlands, expanding on previous records of only six sources. The springs, which are thermal, saline, and sulfurous, are located between 384 and 3147 m a.s.l., mainly in mountainous areas with structural slopes and permeable sedimentary formations, such as the Pulluicana Group (composed mainly of sandstones and shales) and the Sarayaquillo Formation (characterized by reddish sandstones and siltstones). Physicochemical analysis showed temperatures ranging from 15.1 to 38.2 °C, pH from 5.20 to 8.72, conductivity between 0.05 and 253 mS/cm, and total dissolved solids from 0.02 to 162.50 g/L. High levels of arsenic and aluminum, likely originating from the natural weathering of rocks rich in these elements, exceeded national limits. Microbiological analysis detected fecal coliforms and Escherichia coli, indicating potential health risks. The results highlight the importance of regular monitoring and proper management to ensure safe use and explore its therapeutic and biotechnological applications, such as microbial bioremediation or development of extremophile-based enzymes. Full article