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23 pages, 4483 KB  
Article
The Impact of GAGs, Cross-Link Maturity and Telopeptides on the Formation of a Porcine Collagen-Based Hydrogel
by Monika Šupová, Šárka Rýglová, Tomáš Suchý, Margit Žaloudková and Martin Braun
Gels 2025, 11(9), 695; https://doi.org/10.3390/gels11090695 - 1 Sep 2025
Abstract
Collagen hydrogels serve as biomimetic scaffolds that closely resemble the natural extracellular matrix, thus providing an ideal 3D biocompatible environment for cells. However, based on our previous experience, not all collagen isolates are capable of gelling, which appears to depend on the type, [...] Read more.
Collagen hydrogels serve as biomimetic scaffolds that closely resemble the natural extracellular matrix, thus providing an ideal 3D biocompatible environment for cells. However, based on our previous experience, not all collagen isolates are capable of gelling, which appears to depend on the type, origin, species, age and sex of the source animal and the collagen isolation method applied. We therefore decided to evaluate porcine collagen-rich materials isolated from two different porcine genotypes applying two different specific isolation methods, and to analyse other main components, i.e., lipids and glycosaminoglycans, as well as amino acid composition and structural and morphological properties. While all the collagen isolates obtained were subjected to the gelling process, only one of them successfully gelled. In addition, the gelling ability of this isolate was confirmed repeatedly on collagens that were isolated from other pigs of the same porcine genotype. The results revealed that the gelling process proceeds via cooperation between the composition and the structure of the collagen isolate. With respect to the composition, one of the most important factors in terms of the success of the gelation process of collagen isolates concerns elevated glycosaminoglycan contents. The structural factors that characterise collagen isolates, i.e., cross-links (immature and mature) and their mutual ratio, as well as the presence of telopeptides, strongly impact the progress of the gelling process and the resulting character of the hydrogel structure. All these factors are influenced by the isolation procedure. Full article
(This article belongs to the Special Issue Advances in Hydrogels for Regenerative Medicine)
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17 pages, 5477 KB  
Article
Optimisation of Supercritical CO2 Extraction from Black (Ribes nigrum) and Red (Ribes rubrum) Currant Pomace
by Filip Herzyk and Małgorzata Korzeniowska
Appl. Sci. 2025, 15(16), 9222; https://doi.org/10.3390/app15169222 - 21 Aug 2025
Viewed by 349
Abstract
Fruit pomace, generated as a by-product of juice processing, is a valuable source of bioactive compounds but requires sustainable extraction approaches to enable its valorisation. Supercritical CO2 extraction (SFE-CO2) represents a promising green technology due to its efficiency, solvent-free character, [...] Read more.
Fruit pomace, generated as a by-product of juice processing, is a valuable source of bioactive compounds but requires sustainable extraction approaches to enable its valorisation. Supercritical CO2 extraction (SFE-CO2) represents a promising green technology due to its efficiency, solvent-free character, and tuneable selectivity. In this study, the response surface methodology (RSM) was applied to evaluate the effects of pressure, temperature, and time on the recovery of fat, protein, and total phenolic compounds (TPCs) from blackcurrant (Ribes nigrum) and redcurrant (Ribes rubrum) pomace subjected to conventional- and freeze-drying. The highest protein content (14.5%) was obtained in freeze-dried blackcurrant at 400 bar, 60 min, and 30 °C, while the maximum TPCs (24.60 mg GAE/g d.w.) was reached at 500 bar, 60 min, and 40 °C. The redcurrant samples consistently showed lower extractable values across all the responses. Pressure and time were identified as the most influential process variables, enhancing the solvent density and mass transfer during extraction. These results demonstrate that both the drying pre-treatment and raw material type significantly affect the SFE efficiency and confirm the potential of optimised SFE-CO2 as a viable strategy for converting fruit pomace into functional ingredients for food, nutraceutical, and cosmetic applications. Full article
(This article belongs to the Section Applied Biosciences and Bioengineering)
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19 pages, 2646 KB  
Article
Fundamentals of Metal Contact to p-Type GaN—A New Multilayer Energy-Saving Design
by Konrad Sakowski, Cyprian Sobczak, Pawel Strak and Stanislaw Krukowski
Electronics 2025, 14(16), 3309; https://doi.org/10.3390/electronics14163309 - 20 Aug 2025
Viewed by 368
Abstract
The electrical properties of contacts to p-type nitride semiconductor devices, based on gallium nitride, were simulated by ab initio and drift-diffusion calculations. The electrical properties of the contact are shown to be dominated by the electron-transfer process from the metal to GaN, which [...] Read more.
The electrical properties of contacts to p-type nitride semiconductor devices, based on gallium nitride, were simulated by ab initio and drift-diffusion calculations. The electrical properties of the contact are shown to be dominated by the electron-transfer process from the metal to GaN, which is related to the Fermi-level difference, as determined by both ab initio and model calculations. The results indicate a high potential barrier for holes, leading to the non-Ohmic character of the contact. The electrical nature of the Ni–Au contact formed by annealing in an oxygen atmosphere was elucidated. The influence of doping on the potential profile of p-type GaN was calculated using the drift-diffusion model. The energy-barrier height and width for hole transport were determined. Based on these results, a new type of contact is proposed. The contact is created by employing multiple-layer implantation of deep acceptors. The implementation of such a design promises to attain superior characteristics (resistance) compared with other contacts used in bipolar nitride semiconductor devices. The development of such contacts will remove one of the main obstacles in the development of highly efficient nitride optoelectronic devices, both LEDs and LDs: energy loss and excessive heat production close to the multiple-quantum-well system. Full article
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25 pages, 6626 KB  
Article
Expressive Circles—Original Concept Regarding the Structural and Dramaturgical Aspects of the Musical Composition in the Piece EXPRESSIVE CIRCLES—Three Pieces for Piano Trio: Composer’s Self-Reflection
by Patryk Kusiak
Arts 2025, 14(4), 98; https://doi.org/10.3390/arts14040098 - 20 Aug 2025
Viewed by 364
Abstract
The objective of this article is to present an original approach for modern composers to construct their musical work regarding its structural and dramaturgical aspects. The concept of Expressive circles originated primarily in inspirations taken from the movement in art called Surrealism and [...] Read more.
The objective of this article is to present an original approach for modern composers to construct their musical work regarding its structural and dramaturgical aspects. The concept of Expressive circles originated primarily in inspirations taken from the movement in art called Surrealism and from music composed by Hanna Kulenty (which she describes as musique surrealistique). There are also parallels to other concepts (unism in music, surconventional deconstruction of the musical material) or to other composers (Witold Lutosławski). In the article, I present three types of Expressive circles (i.e., three form models)—closed structure, open structure and inverted structure. Each model is characterised by different approach to the musical theme and to its development in the musical piece. Considering the dramaturgical aspects of the work, the trance-like character of the music is important and there are two types of musical trances that I distinguish in Expressive circles, logarithm and drive; both are achieved differently in the musical work. The theoretical assumptions of the concept presented in the article are illustrated by chosen fragments from the score of my composition (EXPRESSIVE CIRCLES—Three pieces for piano trio) and by colourful schemes showing how the concept translates from theory to music. Full article
(This article belongs to the Special Issue Sound, Space, and Creativity in Performing Arts)
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19 pages, 2493 KB  
Article
Harnessing Generative Artificial Intelligence to Construct Multimodal Resources for Chinese Character Learning
by Jinglei Yu, Jiachen Song and Yu Lu
Systems 2025, 13(8), 692; https://doi.org/10.3390/systems13080692 - 13 Aug 2025
Viewed by 333
Abstract
In Chinese character learning, distinguishing similar characters is challenging for learners regardless of their proficiency. This is due to the complex orthography (visual word form) linking symbol, pronunciation, and meaning. Multimedia learning is a promising approach to implement learning strategies for Chinese characters. [...] Read more.
In Chinese character learning, distinguishing similar characters is challenging for learners regardless of their proficiency. This is due to the complex orthography (visual word form) linking symbol, pronunciation, and meaning. Multimedia learning is a promising approach to implement learning strategies for Chinese characters. However, the availability of multimodal resources specifically designed for distinguishing similar Chinese characters is limited. With the advanced development of generative artificial intelligence (GenAI), we propose a practical framework for constructing multimodal resources, enabling flexible and semi-automated resource generation for Chinese character learning. The framework first constructs image illustrations due to their broad applicability across various learning contexts. After that, other four types of multimodal resources implementing learning strategies for similar character learning can be developed in the future, including summary slide, micro-video, self-test question, and basic information. An experiment was conducted with one group receiving the constructed multimodal resources and the other receiving the traditional text-based resources for similar character learning. We explored the participants’ learning performance, motivation, satisfaction, and attitudes. The results showed that the multimodal resources significantly improved performance on distinguishing simple characters, but were not suitable for non-homophones, i.e., visually similar characters with different pronunciations. Micro-videos introducing character formation knowledge significantly increased students’ learning motivation for character evolution and calligraphy. Overall, the resources received high satisfaction, especially for micro-videos and image illustrations. The findings regarding the effective design of multimodal resources for implementing learning strategies (e.g., using visual mnemonics, character formation knowledge, and group reviews) and implications for different Chinese character types are also discussed. Full article
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25 pages, 30383 KB  
Article
Multimodal Handwritten Exam Text Recognition Based on Deep Learning
by Hua Shi, Zhenhui Zhu, Chenxue Zhang, Xiaozhou Feng and Yonghang Wang
Appl. Sci. 2025, 15(16), 8881; https://doi.org/10.3390/app15168881 - 12 Aug 2025
Viewed by 383
Abstract
To address the complex challenge of recognizing mixed handwritten text in practical scenarios such as examination papers and to overcome the limitations of existing methods that typically focus on a single category, this paper proposes MHTR, a Multimodal Handwritten Text Adaptive Recognition algorithm. [...] Read more.
To address the complex challenge of recognizing mixed handwritten text in practical scenarios such as examination papers and to overcome the limitations of existing methods that typically focus on a single category, this paper proposes MHTR, a Multimodal Handwritten Text Adaptive Recognition algorithm. The framework comprises two key components, a Handwritten Character Classification Module and a Handwritten Text Adaptive Recognition Module, which work in conjunction. The classification module performs fine-grained analysis of the input image, identifying different types of handwritten content such as Chinese characters, digits, and mathematical formula. Based on these results, the recognition module dynamically selects specialized sub-networks tailored to each category, thereby enhancing recognition accuracy. To further reduce errors caused by similar character shapes and diverse handwriting styles, a Context-aware Recognition Optimization Module is introduced. This module captures local semantic and structural information, improving the model’s understanding of character sequences and boosting recognition performance. Recognizing the limitations of existing public handwriting datasets, particularly their lack of diversity in character categories and writing styles, this study constructs a heterogeneous, integrated handwritten text dataset. The dataset combines samples from multiple sources, including Chinese characters, numerals, and mathematical symbols, and features high structural complexity and stylistic variation to better reflect real-world application needs. Experimental results show that MHTR achieves a recognition accuracy of 86.63% on the constructed dataset, significantly outperforming existing methods. Furthermore, the context-aware optimization module demonstrates strong adaptive correction capabilities in various misrecognition scenarios, confirming the effectiveness and practicality of the proposed approach for complex, multi-category handwritten text recognition tasks. Full article
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21 pages, 1344 KB  
Article
Research on Intelligent Extraction Method of Influencing Factors of Loess Landslide Geological Disasters Based on Soft-Lexicon and GloVe
by Lutong Huang, Yueqin Zhu, Yingfei Li, Tianxiao Yan, Yu Xiao, Dongqi Wei, Ziyao Xing and Jian Li
Appl. Sci. 2025, 15(16), 8879; https://doi.org/10.3390/app15168879 - 12 Aug 2025
Viewed by 227
Abstract
Loess landslide disasters are influenced by a multitude of factors, including slope conditions, triggering mechanisms, and spatial attributes. Extracting these factors from unstructured geological texts is challenging due to nested entities, semantic ambiguity, and rare domain-specific terms. This study proposes a joint extraction [...] Read more.
Loess landslide disasters are influenced by a multitude of factors, including slope conditions, triggering mechanisms, and spatial attributes. Extracting these factors from unstructured geological texts is challenging due to nested entities, semantic ambiguity, and rare domain-specific terms. This study proposes a joint extraction framework guided by a domain ontology that categorizes six types of loess landslide influencing factors, including spatial relationships. The ontology facilitates conceptual classification and semi-automatic nested entity annotation, enabling the construction of a high-quality corpus with eight tag types. The model integrates a Soft-Lexicon mechanism that enhances character-level GloVe embeddings with explicit lexical features, including domain terms, part-of-speech tags, and word boundary indicators derived from a domain-specific lexicon. The resulting hybrid character-level representations are then fed into a BiLSTM-CRF architecture to jointly extract entities, attributes, and multi-level spatial and causal relationships. Extracted results are structured using a content-knowledge model to build a spatially enriched knowledge graph, supporting semantic queries and intelligent reasoning. Experimental results demonstrate improved performance over baseline methods, showcasing the framework’s effectiveness in geohazard information extraction and disaster risk analysis. Full article
(This article belongs to the Special Issue Applications of Big Data and Artificial Intelligence in Geoscience)
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26 pages, 8682 KB  
Article
Hybrid Alginate–Graphene Composites: Biochemical Features and Biomedical Potential
by Marcin H. Kudzin, Anna Kaczmarek, Zdzisława Mrozińska, Cesar Hernandez, Klaudia Piekarska, Katarzyna Woźniak, Michał Juszczak and Paulina Król
Mar. Drugs 2025, 23(8), 323; https://doi.org/10.3390/md23080323 - 9 Aug 2025
Viewed by 537
Abstract
Alginate-based materials are widely studied for biomedical use, but their limited mechanical properties and variable biocompatibility pose challenges. In this work, hybrid composites composed of alginate, calcium, and graphene oxide were fabricated using a freeze-drying method and cross-linked with calcium ions via calcium [...] Read more.
Alginate-based materials are widely studied for biomedical use, but their limited mechanical properties and variable biocompatibility pose challenges. In this work, hybrid composites composed of alginate, calcium, and graphene oxide were fabricated using a freeze-drying method and cross-linked with calcium ions via calcium chloride at different concentrations. Structural and morphological features were assessed using SEM, EDS, ICP-MS, and BET analysis. The resulting composites exhibited a porous architecture, with calcium incorporation confirmed by elemental analysis. Surface characteristics and pore parameters were influenced by the presence of graphene oxide and the cross-linking process. The effects of the materials on haemostasis were evaluated through activated partial thromboplastin time (aPTT) and prothrombin time (PT) assays, revealing modulation of the intrinsic coagulation pathway without significant changes in the extrinsic pathway. In this study, we analysed the effect of alginate–graphene oxide composites on the viability of peripheral blood mononuclear (PBM) cells and human foreskin fibroblasts from the Hs68 cell line. We also assessed the genotoxic potential of alginate–graphene oxide composites on these cells. Our results showed no cyto- or genotoxic effects of the material on either cell type. These findings suggest the biocompatibility and safe character of alginate–graphene oxide composites for use with blood and skin cells. Full article
(This article belongs to the Section Biomaterials of Marine Origin)
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14 pages, 3669 KB  
Article
Facile Approach for Fabrication of Hydrophobic Aluminum Alloy Surfaces Using Fatty Acids
by Alina Matei, Oana Brincoveanu and Vasilica Ţucureanu
Metals 2025, 15(8), 884; https://doi.org/10.3390/met15080884 - 7 Aug 2025
Viewed by 379
Abstract
Alloys and metals exhibit high sensitivity to corrosion and aggressive environments. Hence, the development of protective treatments through accessible methods with a high degree of protection has become a necessity. This paper presents a method for treating the hydrophilic surface of aluminum alloys [...] Read more.
Alloys and metals exhibit high sensitivity to corrosion and aggressive environments. Hence, the development of protective treatments through accessible methods with a high degree of protection has become a necessity. This paper presents a method for treating the hydrophilic surface of aluminum alloys using two types of unsaturated fatty acids, thereby increasing the degree of hydrophobicity and protecting the material. The samples were cleaned by a chemical process, followed by immersion in oleic acid (C18H34O2, 18:1 cis-9) and elaidic acid (C18H34O2, 18:1 trans-9), and they were then treated at a temperature of 80 °C. Morphological and microstructural analyses were conducted using OM, FE-SEM, EDX, and FTIR to understand the influence of unsaturated monocarboxylic fatty acids on the alloy surfaces. The wettability capacity of the alloys was investigated by measuring the contact angle (CA). The results revealed that the cleaning step and modification treatment with fatty acids are essential steps for increasing the hydrophobic character of the surface. This study can be applied to various types of metallic substrates to enhance their corrosion resistance and long-term chemical stability in aggressive environments, making it adaptable for use in different industrial fields. Full article
(This article belongs to the Special Issue Surface Treatments and Coating of Metallic Materials)
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20 pages, 4676 KB  
Article
Multifunctional, Biocompatible Hybrid Surface Coatings Combining Antibacterial, Hydrophobic and Fluorescent Applications
by Gökçe Asan and Osman Arslan
Polymers 2025, 17(15), 2139; https://doi.org/10.3390/polym17152139 - 5 Aug 2025
Viewed by 659
Abstract
The hybrid inorganic–organic material concept plays a bold role in multifunctional materials, combining different features on one platform. Once varying properties coexist without cancelling each other on one matrix, a new type of supermaterial can be formed. This concept showed that silver nanoparticles [...] Read more.
The hybrid inorganic–organic material concept plays a bold role in multifunctional materials, combining different features on one platform. Once varying properties coexist without cancelling each other on one matrix, a new type of supermaterial can be formed. This concept showed that silver nanoparticles can be embedded together with inorganic and organic surface coatings and silicon quantum dots for symbiotic antibacterial character and UV-excited visible light fluorescent features. Additionally, fluorosilane material can be coupled with this prepolymeric structure to add the hydrophobic feature, showing water contact angles around 120°, providing self-cleaning features. Optical properties of the components and the final material were investigated by UV-Vis spectroscopy and PL analysis. Atomic investigations and structural variations were detected by XPS, SEM, and EDX atomic mapping methods, correcting the atomic entities inside the coating. FT-IR tracked surface features, and statistical analysis of the quantum dots and nanoparticles was conducted. Multifunctional final materials showed antibacterial properties against E. coli and S. aureus, exhibiting self-cleaning features with high surface contact angles and visible light fluorescence due to the silicon quantum dot incorporation into the sol-gel-produced nanocomposite hybrid structure. Full article
(This article belongs to the Special Issue Polymer Coatings for High-Performance Applications)
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12 pages, 249 KB  
Article
Optimization of Grist Composition for Mash Production from Unmalted Wheat and Wheat Malt of Red Winter Wheat with Hybrid Endosperm Type
by Kristina Habschied, Iztok Jože Košir, Miha Ocvirk, Krešimir Mastanjević and Vinko Krstanović
Beverages 2025, 11(4), 110; https://doi.org/10.3390/beverages11040110 - 4 Aug 2025
Viewed by 443
Abstract
Since wheats used for use in brewing mainly belong to the winter red hard hybrid endosperm type, this paper examined the influence of different proportions of wheat of this type (seven varieties) in the ratio of 0–100% in the grist, both unmalted and [...] Read more.
Since wheats used for use in brewing mainly belong to the winter red hard hybrid endosperm type, this paper examined the influence of different proportions of wheat of this type (seven varieties) in the ratio of 0–100% in the grist, both unmalted and as wheat malt. The quality of the starting wheats, the resulting malts and mashs with different added wheat proportions (100, 80, 60, 40, 20 and 0%) were examined. The obtained results show that the maximum shares of wheat/wheat malt in the infusion are significantly different between varieties of similar initial quality. However, they can differ considerably for the same variety when it is used as unmalted raw material and when it is used as wheat malt. Wheat malt can be added to the mixture in a significantly larger proportion compared to unmalted wheat. Furthermore, when an extended number of criteria (parameters) are applied, some varieties may be acceptable that otherwise would not be if the basic number of parameters were applied (total protein—TP, total soluble protein—TSP and viscosity—VIS) and vice versa. The inclusion of other parameters—filtration speed (FIL), saccharification time (SAC), color (COL), proportion of fine extract (EXT) and fermentability of pomace (FAL) (some of which have the character of so-called “cumulative parameters”)—complicates a clear classification into the aforementioned qualitative groups but also increases the number of varieties acceptable or conditionally acceptable for brewing. Full article
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24 pages, 11280 KB  
Article
Identifying Landscape Character in Multi-Ethnic Areas in Southwest China: The Case of the Miao Frontier Corridor
by Yanjun Liu, Xiaomei Li, Shangjun Lu, Liyun Xie and Zongsheng Huang
Land 2025, 14(8), 1571; https://doi.org/10.3390/land14081571 - 31 Jul 2025
Viewed by 690
Abstract
The landscapes of China’s multi-ethnic areas are rich in natural and cultural value, but they are threatened by homogenization and urbanization. This study aims to establish a method for identifying and classifying the landscape characters in China’s multi-ethnic areas to support the protection [...] Read more.
The landscapes of China’s multi-ethnic areas are rich in natural and cultural value, but they are threatened by homogenization and urbanization. This study aims to establish a method for identifying and classifying the landscape characters in China’s multi-ethnic areas to support the protection and sustainable development of the landscape in these areas. Taking the Miao Frontier Corridor as an example, the study optimized a parameterization method of landscape character assessment (LCA), integrated relevant cultural and natural elements, and used the K-means clustering algorithm to determine the landscape character types and regions of the Miao Frontier Corridor. The results show that (1) the natural conditions, ethnic exchanges, and historical institutions of the Miao Frontier Corridor have had a significant impact on its overall landscape; and (2) using ethnic group culture as a cultural element in LCA helps to reveal the unique cultural value of areas with different landscape characters. This study expands the LCA framework and applies it to multi-ethnic areas in China, thereby establishing a database that can serve as the basis for cross-regional landscape protection, management, and development planning in these areas. The research methods can be widely used in other multi-ethnic areas in China. Full article
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20 pages, 8292 KB  
Article
Landscape Zoning Strategies for Small Mountainous Towns: Insights from Yuqian Town in China
by Qingwei Tian, Yi Xu, Shaojun Yan, Yizhou Tao, Xiaohua Wu and Bifan Cai
Sustainability 2025, 17(15), 6919; https://doi.org/10.3390/su17156919 - 30 Jul 2025
Viewed by 381
Abstract
Small towns in mountainous regions face significant challenges in formulating effective landscape zoning strategies due to pronounced landscape fragmentation, which is driven by both the dominance of large-scale forest resources and the lack of coordination between administrative planning departments. To tackle this problem, [...] Read more.
Small towns in mountainous regions face significant challenges in formulating effective landscape zoning strategies due to pronounced landscape fragmentation, which is driven by both the dominance of large-scale forest resources and the lack of coordination between administrative planning departments. To tackle this problem, this study focused on Yuqian, a quintessential small mountainous town in Hangzhou, Zhejiang Province. The town’s layout was divided into a grid network measuring 70 m × 70 m. A two-step cluster process was employed using ArcGIS and SPSS software to analyze five landscape variables: altitude, slope, land use, heritage density, and visual visibility. Further, eCognition software’s semi-automated segmentation technique, complemented by manual adjustments, helped delineate landscape character types and areas. The overlay analysis integrated these areas with administrative village units, identifying four landscape character types across 35 character areas, which were recategorized into four planning and management zones: urban comprehensive service areas, agricultural and cultural tourism development areas, industrial development growth areas, and mountain forest ecological conservation areas. This result optimizes the current zoning types. These zones closely match governmental sustainable development zoning requirements. Based on these findings, we propose integrated landscape management and conservation strategies, including the cautious expansion of urban areas, leveraging agricultural and cultural tourism, ensuring industrial activities do not impact the natural and village environment adversely, and prioritizing ecological conservation in sensitive areas. This approach integrates spatial and administrative dimensions to enhance landscape connectivity and resource sustainability, providing key guidance for small town development in mountainous regions with unique environmental and cultural contexts. Full article
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27 pages, 5245 KB  
Article
The Good, the Bad, or Both? Unveiling the Molecular Functions of LINC01133 in Tumors
by Leandro Teodoro Júnior and Mari Cleide Sogayar
Non-Coding RNA 2025, 11(4), 58; https://doi.org/10.3390/ncrna11040058 - 30 Jul 2025
Viewed by 565
Abstract
Background/Objectives: Increasing evidence suggests that lncRNAs are core regulators in the field of tumor progression, with context-specific functions in oncogenic tumorigenesis. LINC01133, a lncRNA that has been identified as both an oncogene and a tumor suppressor, remains largely unexplored in terms of its [...] Read more.
Background/Objectives: Increasing evidence suggests that lncRNAs are core regulators in the field of tumor progression, with context-specific functions in oncogenic tumorigenesis. LINC01133, a lncRNA that has been identified as both an oncogene and a tumor suppressor, remains largely unexplored in terms of its molecular mechanisms. The purpose of this study was to conduct an in silico analysis, incorporating literature research on various cancer types, to investigate the structural and functional duality of LINC01133. This analysis aimed to identify pathways influenced by LINC01133 and evaluate its mechanism of action as a potential therapeutic target and diagnostic biomarker. Methods: In silico analyses and a narrative review of the literature were performed to predict conserved structural elements, functional internal loops, and overall conservation of the LINC01133 sequence among different vertebrate organisms, summarizing the empirical evidence regarding its roles as a tumor suppressor and tumor-promoting roles in various types of tumors. Results: LINC01133 harbors the evolutionarily conserved structural regions that might allow for binding to relevant driver signaling pathways, substantiating its specific functionality. Its action extends beyond classical tumor mechanisms, affecting proliferation, migration, invasion, and epigenetic pathways in various types of tumors, as indicated by the in silico results and narrative review of the literature we present here. Clinical outcome associations pointed to its potential as a biomarker. Conclusions: The dual character of LINC01133 in tumor biology further demonstrates its prospective therapeutic value, but complete elucidation of its mechanisms of action requires further investigation. This study establishes LINC01133 as a multifaceted lncRNA, supporting context-specific strategies in targeting its pathways, and calls for expanded research to harness its full potential in oncology. Full article
(This article belongs to the Special Issue Non-coding RNA as Biomarker in Cancer)
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14 pages, 12948 KB  
Article
Phylogenetic Analyses and Plastome Comparison to Confirm the Taxonomic Position of Ligusticum multivittatum (Apiaceae, Apioideae)
by Changkun Liu, Boni Song, Feng Yong, Chengdong Xu, Quanying Dong, Xiaoyi Wang, Chao Sun and Zhenji Wang
Genes 2025, 16(7), 823; https://doi.org/10.3390/genes16070823 - 14 Jul 2025
Viewed by 378
Abstract
Background: Ligusticum L. plants exhibit significant morphological variation in leaves, flowers, bracteoles and mericarps, thus the classifications of members for the genus have always been controversial. Among them, the taxonomic problem of Ligusticum multivittatum Franch. is the most prominent, which has not been [...] Read more.
Background: Ligusticum L. plants exhibit significant morphological variation in leaves, flowers, bracteoles and mericarps, thus the classifications of members for the genus have always been controversial. Among them, the taxonomic problem of Ligusticum multivittatum Franch. is the most prominent, which has not been sufficiently resolved so far. Methods: to clarify the taxonomic position of Ligusticum multivittatum, we performed phylogenetic analyses based on plastome data and ITS sequences. Meanwhile, we conducted comprehensively comparative plastome analyses between Ligusticum multivittatum and fifteen Ligusticopsis species. Results: Both analyses robustly supported that Ligusticum multivittatum nested in genus Ligusticopsis Leute and formed a clade with fifteen Ligusticopsis species, belonged to the Selineae tribe, which was distant from the type species of Ligusticum (Ligusticum scoticum), located in the Acronema clade.The comparative results showed that sixteen plastomes were highly similar and conservative in genome structure, size, gene content and arrangement, codon bias, SSRs and SC/IR. These findings imply that Ligusticum multivittatum is a member of Ligusticopsis, which was further verified by their shared morphological characters: stem base clothed in fibrous remnant sheaths, white petals, pinnate bracteoles, dorsally compressed mericarps with slightly prominent dorsal ribs, winged lateral ribs and numerous vittae in the commissure and in each furrow. Therefore, combining with the evidences of phylogenetic analyses, plastome comparison and morphological features, we affirmed that Ligusticum multivittatum indeed belonged to Ligusticopsis and transformed it into Ligusticopsis conducted by Pimenov was reasonable. Conclusions: Our study not only confirms the classification of Ligusticum multivittatum by integrating evidences, but also provides a reference for resolving taxonomy of contentious taxa. Full article
(This article belongs to the Section Plant Genetics and Genomics)
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