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  • Review
  • Open Access
179 Citations
23,601 Views
41 Pages

Fungal-Bacterial Interactions in Health and Disease

  • Wibke Krüger,
  • Sarah Vielreicher,
  • Mario Kapitan,
  • Ilse D. Jacobsen and
  • Maria Joanna Niemiec

Fungi and bacteria encounter each other in various niches of the human body. There, they interact directly with one another or indirectly via the host response. In both cases, interactions can affect host health and disease. In the present review, we...

  • Review
  • Open Access
2 Citations
2,564 Views
17 Pages

6 August 2025

Highly pathogenic avian influenza (HPAI) remains a persistent threat to global poultry production and public health. Current vaccine platforms show limited cross-clade efficacy and often fail to induce mucosal immunity. Recent advances in microbiome...

  • Review
  • Open Access
12 Citations
5,756 Views
29 Pages

23 February 2023

Bacterial co-culture studies using synthetic gut microbiomes have reported novel research designs to understand the underlying role of bacterial interaction in the metabolism of dietary resources and community assembly of complex microflora. Since la...

  • Article
  • Open Access
1,394 Views
13 Pages

Mucochytrium quahogii, also known as QPX or Quahog Parasite Unknown, is the causative agent of QPX disease in the hard clam (Mercenaria mercenaria). Host–pathogen–environment interactions between M. quahogii, the hard clam, and temperatur...

  • Review
  • Open Access
10 Citations
5,442 Views
16 Pages

Pharmacomicrobiomics and Drug–Infection Interactions: The Impact of Commensal, Symbiotic and Pathogenic Microorganisms on a Host Response to Drug Therapy

  • Norma Torres-Carrillo,
  • Erika Martínez-López,
  • Nora Magdalena Torres-Carrillo,
  • Andres López-Quintero,
  • José Miguel Moreno-Ortiz,
  • Anahí González-Mercado and
  • Itzae Adonai Gutiérrez-Hurtado

4 December 2023

Microorganisms have a close relationship with humans, whether it is commensal, symbiotic, or pathogenic. Recently, it has been documented that microorganisms may influence the response to drug therapy. Pharmacomicrobiomics is an emerging field that f...

  • Article
  • Open Access
1 Citations
1,005 Views
16 Pages

9 August 2025

Using metrics from network theory allows us to understand the structural organization of epiphyte communities and identify the host trees (phorophytes) that are fundamental to their establishment. In this study, we applied ecological network metrics...

  • Article
  • Open Access
38 Citations
4,929 Views
10 Pages

26 September 2022

Either extracts, cell-free suspensions or bacterial suspensions are used to study bacterial lipid peroxidation processes. Along with gas chromatography-mass spectrometry, liquid chromatography-mass spectrometry, and several other strategies, the thio...

  • Review
  • Open Access
94 Citations
19,841 Views
26 Pages

In all metazoans, the intestinal tract is an essential organ to integrate nutritional signaling, hormonal cues and immunometabolic networks. The dysregulation of intestinal epithelium functions can impact organism physiology and, in humans, leads to...

  • Review
  • Open Access
54 Citations
8,044 Views
25 Pages

The Blood Microbiome and Health: Current Evidence, Controversies, and Challenges

  • Hong Sheng Cheng,
  • Sin Pei Tan,
  • David Meng Kit Wong,
  • Wei Ling Yolanda Koo,
  • Sunny Hei Wong and
  • Nguan Soon Tan

Blood is conventionally thought to be sterile. However, emerging evidence on the blood microbiome has started to challenge this notion. Recent reports have revealed the presence of genetic materials of microbes or pathogens in the blood circulation,...

  • Review
  • Open Access
34 Citations
14,028 Views
23 Pages

Preterm infants are at increased risk for invasive neonatal bacterial infections. S. epidermidis, a ubiquitous skin commensal, is a major cause of late-onset neonatal sepsis, particularly in high-resource settings. The vulnerability of preterm infant...

  • Article
  • Open Access
5 Citations
4,316 Views
16 Pages

Primary Human Dendritic Cells and Whole-Blood Based Assays to Evaluate Immuno-Modulatory Properties of Heat-Killed Commensal Bacteria

  • James E. Norton,
  • Sushma Kommineni,
  • Patricia Akrivoulis,
  • Dario A. Gutierrez,
  • Daria J. Hazuda and
  • Gokul Swaminathan

There is mounting evidence that the microbiome plays a critical role in training and maturation of the host immune system. Pre-clinical and clinical studies have shown that microbiome perturbation is correlated with sub-optimal host responses to vacc...

  • Review
  • Open Access
17 Citations
6,577 Views
11 Pages

The Impact of Intraspecies and Interspecies Bacterial Interactions on Disease Outcome

  • Jiwasmika Baishya,
  • Karishma Bisht,
  • Jeanette N. Rimbey,
  • Kiddist D. Yihunie,
  • Shariful Islam,
  • Hafij Al Mahmud,
  • Jayc E. Waller and
  • Catherine A. Wakeman

21 January 2021

The human microbiota is an array of microorganisms known to interact with the host and other microbes. These interactions can be competitive, as microbes must adapt to host- and microorganism-related stressors, thus producing toxic molecules, or coop...

  • Article
  • Open Access
5 Citations
5,020 Views
19 Pages

Rifaximin is a broad-spectrum antibiotic that ameliorates symptomatology in inflammatory/functional gastrointestinal disorders. We assessed changes in gut commensal microbiota (GCM) and Toll-like receptors (TLRs) associated to rifaximin treatment in...

  • Article
  • Open Access
12 Citations
7,729 Views
23 Pages

Amid trends in non-dairy probiotic foods and functional coffees, it is timely to develop a high-count probiotic, fermented coffee beverage. Here, we aimed to enhance the viabilities of different probiotic lactobacilli strains in coffee brews by co-cu...

  • Review
  • Open Access
4 Citations
2,327 Views
47 Pages

Wounds and the Microbiota: The Healing Interplay Between Host and Microbial Communities

  • Raghad Al-Taweel,
  • Ayat S Hammad,
  • Ali Tajammul,
  • Sergio Crovella and
  • Maha Al-Asmakh

24 November 2025

Chronic, non-healing wounds represent a major global health challenge, often aggravated by microbial dysbiosis and impaired host responses. Wound healing progresses through four overlapping phases—hemostasis, inflammation, proliferation, and re...

  • Article
  • Open Access
22 Citations
6,413 Views
13 Pages

Attach Me If You Can: Murine Norovirus Binds to Commensal Bacteria and Fungi

  • Jasmine L. Madrigal,
  • Sutonuka Bhar,
  • Samantha Hackett,
  • Haley Engelken,
  • Ross Joseph,
  • Nemat O. Keyhani and
  • Melissa K. Jones

14 July 2020

The presence of commensal bacteria enhances both acute and persistent infection of murine noroviruses. For several enteric viral pathogens, mechanisms by which these bacteria enhance infection involve direct interactions between the virus and bacteri...

  • Review
  • Open Access
39 Citations
13,407 Views
13 Pages

14 July 2017

Oral health is more than just the absence of disease. The key to oral health is a diverse microbiome in an ecological balance. The oral microbiota is one of the most complex and diverse microbial communities in the human body. To maintain oral health...

  • Review
  • Open Access
114 Citations
16,066 Views
17 Pages

What Is Commensality? A Critical Discussion of an Expanding Research Field

  • Håkan Jönsson,
  • Maxime Michaud and
  • Nicklas Neuman

Commensality (the act of eating together) is studied in a range of disciplines and often considered important for social communion, order, health and well-being, while simultaneously being understood as in decline (especially the family meal). Howeve...

  • Review
  • Open Access
41 Citations
6,911 Views
21 Pages

Role of Microbiota in Viral Infections and Pathological Progression

  • Taketoshi Mizutani,
  • Aya Ishizaka,
  • Michiko Koga,
  • Takeya Tsutsumi and
  • Hiroshi Yotsuyanagi

1 May 2022

Viral infections are influenced by various microorganisms in the environment surrounding the target tissue, and the correlation between the type and balance of commensal microbiota is the key to establishment of the infection and pathogenicity. Some...

  • Review
  • Open Access
139 Citations
16,912 Views
12 Pages

Interaction of Candida Species with the Skin

  • Andreas Kühbacher,
  • Anke Burger-Kentischer and
  • Steffen Rupp

The human skin is commonly colonized by diverse fungal species. Some Candida species, especially C. albicans, do not only reside on the skin surface as commensals, but also cause infections by growing into the colonized tissue. However, defense mecha...

  • Review
  • Open Access
13 Citations
3,979 Views
18 Pages

The human nasal microbiome can be a reservoir for several pathogens, including Staphylococcus aureus. However, certain harmless nasal commensals can interfere with pathogen colonisation, an ability that could be exploited to prevent infection. Althou...

  • Feature Paper
  • Article
  • Open Access
2 Citations
3,371 Views
23 Pages

Effects of E-Liquids and Their Aerosols on Biofilm Formation and Growth of Oral Commensal Streptococcal Communities: Effect of Cinnamon and Menthol Flavors

  • Nicole Christian,
  • Daniel Burden,
  • Alexander Emam,
  • Alvin Brenk,
  • Sarah Sperber,
  • Michael Kalu,
  • Giancarlo Cuadra and
  • Dominic Palazzolo

23 July 2024

(1) Background: The rise in electronic cigarette (E-cigarette) popularity, especially among adolescents, has prompted research to investigate potential effects on health. Although much research has been carried out on the effect on lung health, the f...

  • Review
  • Open Access
11 Citations
4,318 Views
19 Pages

Study of the Relationship between Mucosal Immunity and Commensal Microbiota: A Bibliometric Analysis

  • Shiqi Wang,
  • Jialin Wu,
  • Duo Ran,
  • Guosen Ou,
  • Yaokang Chen,
  • Huachong Xu,
  • Li Deng and
  • Xiaoyin Chen

20 May 2023

This study presents the first bibliometric evaluation and systematic analysis of publications related to mucosal immunity and commensal microbiota over the last two decades and summarizes the contribution of countries, institutions, and scholars in t...

  • Article
  • Open Access
2 Citations
3,764 Views
10 Pages

Eating together at the same table, i.e., commensality, is an old phenomenon among humans. Today, there is a relatively high number of people living in single households eating most meals on their own. Among adults aged 65+ years, both malnutrition an...

  • Review
  • Open Access
75 Citations
8,851 Views
14 Pages

On Commensalism of Candida

  • Jesus A. Romo and
  • Carol A. Kumamoto

17 January 2020

Candida species are both opportunistic fungal pathogens and common members of the human mycobiome. Over the years, the main focus of the fungal field has been on understanding the pathogenic potential and disease manifestation of these organisms. The...

  • Review
  • Open Access
28 Citations
7,178 Views
19 Pages

B Cells and Microbiota in Autoimmunity

  • María Botía-Sánchez,
  • Marta E. Alarcón-Riquelme and
  • Georgina Galicia

Trillions of microorganisms inhabit the mucosal membranes maintaining a symbiotic relationship with the host’s immune system. B cells are key players in this relationship because activated and differentiated B cells produce secretory immunoglobulin A...

  • Article
  • Open Access
16 Citations
5,571 Views
13 Pages

Cutibacterium acnes Biofilm Study during Bone Cells Interaction

  • Céline Mongaret,
  • Jennifer Varin-Simon,
  • Fabien Lamret,
  • Taghrid S. El-Mahdy,
  • Lucien Brasme,
  • Véronique Vernet-Garnier,
  • Sophie C. Gangloff,
  • Xavier Ohl and
  • Fany Reffuveille

Cutibacterium acnes is an opportunistic pathogen involved in Bone and Prosthesis Infections (BPIs). In this study, we observed the behavior of commensal and BPI C. acnes strains in the bone environment through bacterial internalization by osteoblast-...

  • Article
  • Open Access
13 Citations
5,824 Views
14 Pages

Effects of Oral Commensal Streptococci on Porphyromonas gingivalis Invasion into Oral Epithelial Cells

  • Alyssa N. Hanel,
  • Hannah M. Herzog,
  • Michelle G. James and
  • Giancarlo A. Cuadra

2 May 2020

The objective of this study was to determine if the interaction between common oral commensal bacteria and oral epithelial cells would provide protective effects against the invasion of periodontopathogen Porphyromonas gingivalis. Oral epithelial OKF...

  • Review
  • Open Access
53 Citations
11,479 Views
27 Pages

You Talking to Me? Says the Enteric Nervous System (ENS) to the Microbe. How Intestinal Microbes Interact with the ENS

  • Mauro Giuffrè,
  • Rita Moretti,
  • Giuseppina Campisciano,
  • Alexandre Barcelos Morais da Silveira,
  • Vincenzo Maria Monda,
  • Manola Comar,
  • Stefano Di Bella,
  • Roberta Maria Antonello,
  • Roberto Luzzati and
  • Lory Saveria Crocè

18 November 2020

Mammalian organisms form intimate interfaces with commensal and pathogenic gut microorganisms. Increasing evidence suggests a close interaction between gut microorganisms and the enteric nervous system (ENS), as the first interface to the central ner...

  • Review
  • Open Access
23 Citations
9,443 Views
17 Pages

Commensal Intestinal Protozoa—Underestimated Members of the Gut Microbial Community

  • Magdalena Dubik,
  • Bartosz Pilecki and
  • Jesper Bonnet Moeller

30 November 2022

The human gastrointestinal microbiota contains a diverse consortium of microbes, including bacteria, protozoa, viruses, and fungi. Through millennia of co-evolution, the host–microbiota interactions have shaped the immune system to both tolerat...

  • Review
  • Open Access
17 Citations
9,056 Views
17 Pages

The Development of Gut Microbiota and Its Changes Following C. jejuni Infection in Broilers

  • Walid Ghazi Al Hakeem,
  • Keila Y. Acevedo Villanueva and
  • Ramesh K. Selvaraj

5 March 2023

The gut is home to more than millions of bacterial species. The gut bacteria coexist with the host in a symbiotic relationship that can influence the host’s metabolism, nutrition, and physiology and even module various immune functions. The com...

  • Review
  • Open Access
40 Citations
1,340 Views
7 Pages

24 March 2015

The human gut commensal microbiota forms a complex population of microorganisms that survive by maintaining a symbiotic relationship with the host. Amongst the metabolic benefits it brings, formation of adaptive immune system and maintenance of its h...

  • Perspective
  • Open Access
2 Citations
2,331 Views
7 Pages

The Study of Microbe–Host Two-Way Communication

  • Famatta Perry and
  • Ryan J. Arsenault

Back-and-forth intercommunication in host–pathogen interactions has long been recognized to play an important role in commensalism and microbial pathogenesis. For centuries, we have studied these microbes in our surroundings, yet many questions...

  • Article
  • Open Access
2 Citations
2,724 Views
12 Pages

22 July 2022

Norovirus is the leading cause of acute viral gastroenteritis. Both human and murine noroviruses attach to commensal bacteria belonging to the mammalian gut flora, and binding levels are influenced by nutrients present in bacterial media. However, it...

  • Review
  • Open Access
88 Citations
8,810 Views
34 Pages

Molecular and Cellular Mechanisms Influenced by Postbiotics

  • Rafał Jastrząb,
  • Damian Graczyk and
  • Pawel Siedlecki

15 December 2021

In recent years, commensal bacteria colonizing the human body have been recognized as important determinants of health and multiple pathologic conditions. Among the most extensively studied commensal bacteria are the gut microbiota, which perform a p...

  • Article
  • Open Access
10 Citations
5,374 Views
17 Pages

Selective Bacteriocins: A Promising Treatment for Staphylococcus aureus Skin Infections Reveals Insights into Resistant Mutants, Vancomycin Resistance, and Cell Wall Alterations

  • Félix Jaumaux,
  • Kenny Petit,
  • Anandi Martin,
  • Hector Rodriguez-Villalobos,
  • Marjorie Vermeersch,
  • David Perez-Morga and
  • Philippe Gabant

The emergence of antibiotic-resistant S. aureus has become a major public health concern, necessitating the discovery of new antimicrobial compounds. Given that the skin microbiome plays a critical role in the host defence against pathogens, the deve...

  • Review
  • Open Access
5 Citations
3,757 Views
16 Pages

In recent years, host–microbiome interactions in both animals and plants has emerged as a novel research area for studying the relationship between host organisms and their commensal microbial communities. The fitness advantages of this mutuali...

  • Review
  • Open Access
33 Citations
8,886 Views
18 Pages

Protein glycosylation is emerging as an important feature in bacteria. Protein glycosylation systems have been reported and studied in many pathogenic bacteria, revealing an important diversity of glycan structures and pathways within and between bac...

  • Review
  • Open Access
13 Citations
6,080 Views
22 Pages

Digital Forms of Commensality in the 21st Century: A Scoping Review

  • Maína Ribeiro Pereira-Castro,
  • Adriano Gomes Pinto,
  • Tamila Raposo Caixeta,
  • Renata Alves Monteiro,
  • Ximena Pamela Díaz Bermúdez and
  • Ana Valéria Machado Mendonça

The social act of eating together has been influenced and mediated by technologies in recent decades. This phenomenon has been investigated in different academic fields, but the topic is still in an incipient dimension, and there is a lack of consens...

  • Article
  • Open Access
621 Views
23 Pages

Porphyromonas gingivalis Bundled Fimbriae Interact with Outer Membrane Vesicles, Commensals and Fibroblasts

  • Julian Lambertz,
  • Eva Miriam Buhl,
  • Christian Apel,
  • Christian Preisinger and
  • Georg Conrads

30 December 2025

Porphyromonas gingivalis plays a key role in periodontal disease and has been associated with several serious systemic diseases. Its fimbriae are a major virulence factor. We recently demonstrated the formation of bundles of long FimA fimbriae in str...

  • Review
  • Open Access
11 Citations
10,975 Views
20 Pages

Life on this planet has been intricately associated with bacterial activity at all levels of evolution and bacteria represent the earliest form of autonomous existence. Plants such as those from the Leguminosae family that form root nodules while har...

  • Review
  • Open Access
169 Citations
17,596 Views
11 Pages

The Fungal Mycobiome and Its Interaction with Gut Bacteria in the Host

  • Qi Hui Sam,
  • Matthew Wook Chang and
  • Louis Yi Ann Chai

The advent of sequencing technology has endowed us with the capacity to study microbes constituting the human commensal community that were previously non-culturable. Much of the initial works have concentrated on the bacterial flora constituting the...

  • Review
  • Open Access
10 Citations
10,188 Views
10 Pages

As the outermost layer of the body, the skin harbors innumerable and varied microorganisms. These microorganisms interact with the host, and these interactions contribute to host immunity. One of the most abundant genera of skin commensals is Staphyl...

  • Article
  • Open Access
3 Citations
3,544 Views
19 Pages

5 December 2021

Colonic epithelium–commensal interactions play a very important role in human health and disease development. Colonic mucus serves as an ecologic niche for a myriad of commensals and provides a physical barrier between the epithelium and lumina...

  • Review
  • Open Access
11 Citations
7,273 Views
19 Pages

27 October 2023

The gut microbiome is intimately intertwined with the host immune system, having effects on the systemic immune system. Dysbiosis of the gut microbiome has been linked not only to gastrointestinal disorders but also conditions of the skin, lungs, and...

  • Article
  • Open Access
2 Citations
2,208 Views
18 Pages

Transcriptional Responses of Lacticaseibacillus rhamnosus to TNFα, IL-6, IL-8, and IL-10 Cytokines

  • Ksenia M. Klimina,
  • Marina S. Dyachkova,
  • Vladimir A. Veselovsky,
  • Natalia V. Zakharevich,
  • Aleksandra A. Strokach,
  • Oksana V. Selezneva,
  • Egor A. Shitikov,
  • Dmitry A. Bespiatykh,
  • Roman A. Yunes and
  • Evgenii I. Olekhnovich
  • + 5 authors

15 November 2024

The interaction between gut microbiota and the host immune system is a complex and understudied field, with cytokines like TNFα, IL-6, IL-8, and IL-10 playing pivotal roles. Commensal bacteria, including lactobacilli, respond to these cytokines...

  • Review
  • Open Access
6 Citations
5,717 Views
15 Pages

Gut microbiota is a diverse community of microorganisms that constantly work to protect the gut against pathogens. Salmonella stands out as a notorious foodborne pathogen that interacts with gut microbes, causing an imbalance in the overall compositi...

  • Review
  • Open Access
655 Citations
48,878 Views
33 Pages

Probiotics Mechanism of Action on Immune Cells and Beneficial Effects on Human Health

  • Chiara Mazziotta,
  • Mauro Tognon,
  • Fernanda Martini,
  • Elena Torreggiani and
  • John Charles Rotondo

2 January 2023

Immune cells and commensal microbes in the human intestine constantly communicate with and react to each other in a stable environment in order to maintain healthy immune activities. Immune system-microbiota cross-talk relies on a complex network of...

  • Review
  • Open Access
68 Citations
11,256 Views
24 Pages

The Gut-Skin Microbiota Axis and Its Role in Diabetic Wound Healing—A Review Based on Current Literature

  • Bharati Kadamb Patel,
  • Kadamb Haribhai Patel,
  • Ryan Yuki Huang,
  • Chuen Neng Lee and
  • Shabbir M. Moochhala

21 February 2022

Diabetic foot ulcers (DFU) are a growing concern worldwide as they pose complications in routine clinical practices such as diagnosis and management. Bacterial interactions on the skin surface are vital to the pathophysiology of DFU and may control d...

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