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16 pages, 940 KB  
Article
Comparative Effects of Trichoderma guizhouense NJAU4742 and Bacillus velezensis SQR9 on Growth and Pb Accumulation in Salix suchowensis
by Ruifang Huang, Baosong Wang, Ming Xu, Dezong Sui and Xudong He
Int. J. Mol. Sci. 2025, 26(20), 9961; https://doi.org/10.3390/ijms26209961 (registering DOI) - 13 Oct 2025
Abstract
Soil lead (Pb) contamination poses a severe threat to agricultural sustainability and food security. Phytoremediation offers a green alternative for remediation, yet its efficiency is limited by poor plant tolerance and restricted metal uptake. In this study we investigated the functional roles of [...] Read more.
Soil lead (Pb) contamination poses a severe threat to agricultural sustainability and food security. Phytoremediation offers a green alternative for remediation, yet its efficiency is limited by poor plant tolerance and restricted metal uptake. In this study we investigated the functional roles of the microbial inoculants Trichoderma guizhouense NJAU4742 and Bacillus velezensis SQR9 in enhancing the performance of Salix suchowensis P1024 grown in Pb-contaminated soil. NJAU4742 significantly increased plant biomass by 34% (p < 0.05), accompanied by increased soil microbial biomass and higher activities of urease, acid phosphatase, and sucrase. In contrast, SQR9 strongly enhanced Pb accumulation by 19% (p < 0.05), which was accompanied by upregulated antioxidant enzymes, reduced lipid peroxidation, and elevated cysteine levels. Random forest and correlation analyses demonstrated that soil nutrient cycling indices (urease, MBC, sucrase) were key predictors of biomass, whereas antioxidant defenses (POD, CAT) primarily explained Pb accumulation. These findings provide new insights into the distinct contributions of NJAU4742 and SQR9 to willow growth and Pb remediation, and provide a basis for developing more effective microbe-assisted phytoremediation strategies. Full article
(This article belongs to the Section Molecular Plant Sciences)
27 pages, 4953 KB  
Article
Genome-Wide Analysis and Functional Correlation of Tomato JAZ Genes Under Tuta absoluta Infestation and Nanoparticle-Induced Defense
by Inzamam Ul Haq, Abdul Basit, Moazam Hyder, Mirza Naveed Shahzad, Asim Abbasi, Yasir Sharif, Muhammad Adeel Ghafar, Xiangyun Cai, Nazih Y. Rebouh and Youming Hou
Insects 2025, 16(10), 1046; https://doi.org/10.3390/insects16101046 (registering DOI) - 13 Oct 2025
Abstract
Tomato (Solanum lycopersicum) production is increasingly threatened by Tuta absoluta, a destructive pest that compromises yield and quality. To explore sustainable alternatives to conventional insecticides, we investigated the jasmonate-mediated defense pathway by performing a genome-wide characterization of the JAZ gene [...] Read more.
Tomato (Solanum lycopersicum) production is increasingly threatened by Tuta absoluta, a destructive pest that compromises yield and quality. To explore sustainable alternatives to conventional insecticides, we investigated the jasmonate-mediated defense pathway by performing a genome-wide characterization of the JAZ gene family in S. lycopersicum. A total of 39 SlJAZ genes were identified and mapped to 12 chromosomes. Detailed analysis revealed conserved motifs, diverse exon–intron structures, four major phylogenetic groups, and the presence of multiple MeJA- and stress-responsive cis-elements. Synteny analysis indicated gene duplication events and evolutionary conservation with Arabidopsis and potato. Small RNA predictions suggested that 33 SlJAZ genes are targeted by 69 microRNAs, implying multilayered regulation. Transcriptome analysis under four treatment conditions—mesoporous silica nanoparticles (MSNs) ± pest infestation—revealed 21 differentially expressed SlJAZ genes. SlJAZ1, SlJAZ19, SlJAZ20, and SlJAZ22 were notably upregulated under the combined MSN and pest treatment, with expression patterns validated by qRT-PCR (R2 = 0.92). Phenotypic assessment of leaf damage index, larval survival rate, and number of leaf mines showed reduced pest activity in MSN-treated plants. Regression analysis demonstrated significant negative correlations between expression levels of SlJAZ20, SlJAZ26, and SlJAZ29 and pest-related damage traits. These findings indicate that MSNs function as effective elicitors of JA-responsive defense in tomato and modulate the expression of specific JAZ genes linked to enhanced resistance. The study provides a valuable foundation for integrating nanotechnology with molecular defense strategies to promote sustainable pest management. Full article
(This article belongs to the Special Issue Research on Insect Molecular Biology)
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19 pages, 6476 KB  
Article
Research on the Protective Effects and Mechanisms of Gallic Acid Against Cognitive Impairment Induced by Chronic Sleep Deprivation
by Xiangfei Zhang, Jingwen Cui, Jing Sun, Fengzhong Wang, Bei Fan and Cong Lu
Nutrients 2025, 17(20), 3204; https://doi.org/10.3390/nu17203204 (registering DOI) - 12 Oct 2025
Abstract
Background: Gallic acid (GA) is a dietary polyphenol widely found in walnuts, tea leaves, and grapes, and it is recognized for its potent antioxidant and anti-inflammatory properties. Chronic sleep deprivation (CSD) is known to disrupt redox balance, promote neuroinflammation, and impair cognition, [...] Read more.
Background: Gallic acid (GA) is a dietary polyphenol widely found in walnuts, tea leaves, and grapes, and it is recognized for its potent antioxidant and anti-inflammatory properties. Chronic sleep deprivation (CSD) is known to disrupt redox balance, promote neuroinflammation, and impair cognition, while effective nutritional strategies to mitigate these effects remain scarce. This study was designed to evaluate the protective potential of GA against CSD-induced cognitive deficits in mice and to elucidate the underlying mechanisms. Methods: Seventy-two male ICR mice were randomly allocated to six groups, including control, CSD model, Ginkgo biloba extract, and GA at three doses (50, 100, and 200 mg/kg). After 28 days of treatment, cognitive performance was assessed using the open field test (OFT), novel object recognition (NOR), step-through passive avoidance (ST), and Morris water maze (MWM). Redox status and inflammatory mediators were determined by ELISA, while the hippocampal expression of proteins related to antioxidant defense and NF-κB signaling was analyzed by Western blotting. Results: GA supplementation improved exploratory activity, recognition memory, and spatial learning in the CSD mice. Biochemical evaluation revealed that total antioxidant capacity (T-AOC) and superoxide dismutase (SOD) activity were restored, while malondialdehyde (MDA) levels, an indicator of lipid peroxidation, were reduced. These changes were accompanied by decreased circulating concentrations of interleukin-1β (IL-1β), interleukin-6 (IL-6), and tumor necrosis factor-α (TNF-α). At the molecular level, GA enhanced the expression of Nrf2, HO-1, and NQO1, while inhibiting p-p65, iNOS, and COX2 in the hippocampus. Conclusions: These findings demonstrate that GA alleviates CSD-induced cognitive deficits through the activation of the Nrf2/HO-1 antioxidant pathway and inhibition of NF-κB–mediated inflammatory responses. Thus, GA may represent a promising nutraceutical candidate for maintaining cognitive health under chronic sleep loss. Full article
(This article belongs to the Special Issue Therapeutic Potential of Phytochemicals in Neurodegenerative Diseases)
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37 pages, 5073 KB  
Article
Spatiotemporal Variation and Network Correlation Analysis of Flood Resilience in the Central Plains Urban Agglomeration Based on the DRIRA Model
by Lu Liu, Huiquan Wang and Jixia Li
ISPRS Int. J. Geo-Inf. 2025, 14(10), 394; https://doi.org/10.3390/ijgi14100394 (registering DOI) - 12 Oct 2025
Abstract
To address the flood risks driven by climate change and urbanization, this study proposes the DRIRA model (Driving Force, Resistance, Influence, Recoverability, Adaptability). Distinct from BRIC (Baseline Resilience Indicators for Communities) and PEOPLES (Population, Environmental/Ecosystem, Organized Governmental Services, Physical Infrastructure, Lifestyle, Economic Development, [...] Read more.
To address the flood risks driven by climate change and urbanization, this study proposes the DRIRA model (Driving Force, Resistance, Influence, Recoverability, Adaptability). Distinct from BRIC (Baseline Resilience Indicators for Communities) and PEOPLES (Population, Environmental/Ecosystem, Organized Governmental Services, Physical Infrastructure, Lifestyle, Economic Development, Social–Cultural Capital), the model emphasizes dynamic interactions across the entire disaster lifecycle, introduces the “Influence” dimension, and integrates SNA (Social Network Analysis) with a modified gravity model to reveal cascading effects and resilience linkages among cities. Based on an empirical study of 30 cities in the Central Plains Urban Agglomeration, and using a combination of entropy weighting, a modified spatial gravity model, and social network analysis, the study finds that: (1) Urban flood resilience increased by 35.5% from 2012 to 2021, but spatial polarization intensified, with Zhengzhou emerging as the dominant core and peripheral cities falling behind; (2) Economic development, infrastructure investment, and intersectoral governance coordination are the primary factors driving resilience differentiation; (3) Intercity resilience connectivity has strengthened, yet administrative fragmentation continues to undermine collaborative effectiveness. In response, three strategic pathways are proposed: coordinated development of sponge and resilient infrastructure, activation of flood insurance market mechanisms, and intelligent cross-regional dispatch of emergency resources. These strategies offer a scientifically grounded framework for balancing physical flood defenses with institutional resilience in high-risk urban regions. Full article
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21 pages, 796 KB  
Article
Feeding with a NaCl-Supplemented Alfalfa-Based TMR Improves Nutrient Utilization, Rumen Fermentation, and Antioxidant Enzyme Activity in AOHU Sheep: A Nutritional Simulation of Saline–Alkaline Conditions
by Hunegnaw Abebe, Ruochen Yang, Guicong Wei, Xiaoran Feng and Yan Tu
Fermentation 2025, 11(10), 587; https://doi.org/10.3390/fermentation11100587 (registering DOI) - 12 Oct 2025
Abstract
Saline–alkaline soils are becoming prevalent across the globe, decreasing the availability of forage for animals and threatening sustainable animal production. This study evaluated the effects of a NaCl-supplemented alfalfa-based total mixed ration, simulating saline–alkaline soil conditions, on intake, the utilization of nutrients, antioxidant [...] Read more.
Saline–alkaline soils are becoming prevalent across the globe, decreasing the availability of forage for animals and threatening sustainable animal production. This study evaluated the effects of a NaCl-supplemented alfalfa-based total mixed ration, simulating saline–alkaline soil conditions, on intake, the utilization of nutrients, antioxidant levels, and rumen fermentation. A 60-day feeding trial with 24 AOHU lambs (Australian White × Hu) compared a control diet (0.43% NaCl) with the NaCl-supplemented group (1.71% NaCl). Digestibility trials were conducted in metabolic cages for the collection of total feces and urine. Blood samples were taken at 0, 30, and 60 days for serum analysis, and slaughter samples (liver, kidney, rumen tissue, and rumen fluid) were taken for physiological, biochemical, and histological evaluation. The NaCl alfalfa-based TMR markedly increased liver and kidney weights. The rumen muscle layer thickened in the NaCl group. The ruminal ammonia nitrogen (NH3-N), ruminal microbial crude protein (MCP) synthesis, and glucogenic/branched-chain VFAs increased, indicating enhanced proteolysis, microbial protein synthesis, and energetically efficient fermentation. Serum total protein and albumin also rose over time in the NaCl group, reflecting increased nitrogen retention, while superoxide dismutase and glutathione peroxidase activity rose considerably by day 60, reflecting increased antioxidant defense. Furthermore, nitrogen intake, digestibility, and retention were improved in the NaCl group along with augmented digestible and metabolizable energy (28.47 vs. 13.93 MJ/d and 24.68 vs. 11.58 MJ/d, respectively) and gross energy digestibility (78.13% vs. 67.10%). Although NaCl-based alfalfa TMR cannot fully emulate naturally salt-stressed forages, these results indicate that the NaCl alfalfa-based diets improved rumen fermentation, energy yields, and antioxidant enzyme activity without impairing electrolyte balance. These findings suggest that NaCl-supplemented alfalfa-based TMRs, with a salt content comparable to that of alfalfa hay grown under saline–alkaline conditions, could support environmentally sustainable meat production in salt-stressed regions. Full article
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17 pages, 2870 KB  
Article
Nitrogen-Doped Carbon Dots Alleviate Pesticide Toxicity in Tomato by Regulating Antioxidant Systems
by Xu Zhang, Yu Xin, Hao Wang, Yuting Dang, Wenhui Wang, Yi Gao, Yu Han, Rongrui Kang, Qinghua Shi and Han Du
Int. J. Mol. Sci. 2025, 26(20), 9916; https://doi.org/10.3390/ijms26209916 (registering DOI) - 12 Oct 2025
Abstract
The overuse of pesticides has raised serious food-safety and environmental concerns. Carbon dots (CDs) can act as biostimulants by enhancing photosynthesis, thereby promoting plant growth and stress tolerance. However, their roles in plant pesticide detoxification remain unclear. This study synthesized nitrogen-doped carbon dots [...] Read more.
The overuse of pesticides has raised serious food-safety and environmental concerns. Carbon dots (CDs) can act as biostimulants by enhancing photosynthesis, thereby promoting plant growth and stress tolerance. However, their roles in plant pesticide detoxification remain unclear. This study synthesized nitrogen-doped carbon dots (N-CDs) with strong blue fluorescence, excellent biocompatibility, and no cytotoxicity observed in HEK 293T cells. The N-CDs were synthesized from 1.025 g citric acid and 0.379 g urea, producing particles with a size of around 2.42 nm and abundant hydrophilic groups. When applied to tomato plants, N-CDs (especially at 150 mg·L−1) significantly reduced chlorothalonil (CHT) residues affecting tomato, by up to 66%. Importantly, N-CDs also improved tomato plant growth, reversing the negative effects of CHT on key parameters such as height, leaf area, and biomass. Indeed, under CHT conditions, N-CDs significantly reduced the contents of malondialdehyde, superoxide, and hydrogen peroxide. In contrast, N-CDs significantly increased the activities of superoxide dismutase, peroxidases, catalase, and ascorbate peroxidase to 117.57%, 158.53%, 162.79%, and 152.23%, respectively. Notably, N-CDs dramatically changed the glutathione pool for tomato detoxification. Overall, this study synthesized the non-cytotoxic N-CDs that not only promote tomato growth but also alleviate CHT toxicity by strengthening the tomato’s antioxidant defense system. Full article
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44 pages, 2405 KB  
Review
Plasma Membrane Epichaperome–Lipid Interface: Regulating Dynamics and Trafficking
by Haneef Ahmed Amissah, Ruslana Likhomanova, Gabriel Opoku, Tawfeek Ahmed Amissah, Zsolt Balogi, Zsolt Török, László Vigh, Stephanie E. Combs and Maxim Shevtsov
Cells 2025, 14(20), 1582; https://doi.org/10.3390/cells14201582 (registering DOI) - 11 Oct 2025
Abstract
The plasma membrane (PM) of eukaryotic cells plays a key role in the response to stress, acting as the first line of defense against environmental changes and protecting cells against intracellular perturbations. In this work, we explore how membrane-bound chaperones and membrane lipid [...] Read more.
The plasma membrane (PM) of eukaryotic cells plays a key role in the response to stress, acting as the first line of defense against environmental changes and protecting cells against intracellular perturbations. In this work, we explore how membrane-bound chaperones and membrane lipid domains work together to shape plasma membrane properties—a partnership we refer to as the “epichaperome–plasma membrane lipid axis.” This axis influences membrane fluidity, curvature, and domain organization, which in turn shapes the spatial and temporal modulation of signaling platforms and pathways essential for maintaining cellular integrity and homeostasis. Changes in PM fluidity can modulate the activity of ion channels, such as transient receptor potential (TRP) channels. These changes also affect processes such as endocytosis and mechanical signal transduction. The PM proteome undergoes rapid changes in response to membrane perturbations. Among these changes, the expression of heat shock proteins (HSPs) and their accumulation at the PM are essential mediators in regulating the physical state and functional properties of the membrane. Because of the pivotal role in stress adaptation, HSPs influence a wide range of cellular processes, which we grouped into three main categories: (i) mechanistic insights, differentiating in vitro (liposome, reconstituted membrane systems) and in vivo evidence for HSP-PM recruitment; (ii) functional outputs, spanning how ion channels are affected, changes in membrane fluidity, transcytosis, and the process of endocytosis and exosome release; and (iii) pathological effects, focusing on how rewired lipid–chaperone crosstalk in cancer drives resistance to drugs through altered membrane composition and signaling. Finally, we highlight Membrane Lipid Therapy (MLT) strategies, such as nanocarriers targeting specific PM compartments or small molecules that inhibit HSP recruitment, as promising approaches to modulate the functional stability of epichaperome assembly and membrane functionality, with profound implications for tumorigenesis. Full article
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21 pages, 2715 KB  
Article
Comparative Transcriptome Analysis of Rhynchophorus ferrugineus (Coleoptera: Curculionidae) Reveals Potential Mechanisms Involved in the Toxication and Detoxification of the External Immune Compound p-Benzoquinone Present in Oral Secretions
by Juan Chen, Yu-Chen Pu, Wen-Qing You, Ya-Nan Ji, Can-Hui Ding, Zong-Wei Zheng, Yi-Fan Wang and You-Ming Hou
Insects 2025, 16(10), 1044; https://doi.org/10.3390/insects16101044 - 11 Oct 2025
Viewed by 35
Abstract
p-Benzoquinone (PBQ), a highly toxic compound, is the main active component in larval oral secretions of red palm weevil (RPW), Rhynchophorus ferrugineus, playing critical roles in external immunity and pathogen defense. In this study, we demonstrated that pathogens effectively induce RPW larval [...] Read more.
p-Benzoquinone (PBQ), a highly toxic compound, is the main active component in larval oral secretions of red palm weevil (RPW), Rhynchophorus ferrugineus, playing critical roles in external immunity and pathogen defense. In this study, we demonstrated that pathogens effectively induce RPW larval external immune responses. On this basis, the toxicity of PBQ to third-instar larvae was determined, with poisoning symptoms observed. The differences in gene expression between larvae before and after treatment with PBQ were analyzed by transcriptome sequencing to potentially involve the mechanisms of PBQ toxicity on larvae and the mechanisms of detoxification in the infected larvae. The results indicated that PBQ exposure was associated with altered expression of chitinase (CHI) and phenoloxidase (PO) genes in RPW larvae, which not only affects the digestion and degradation of the old cuticle but also activates phenoloxidase, further oxidizing tyrosine for its conversion into DOPA and dopamine, resulting in the generation of melanin and different degrees of cuticular melanization. The transcriptional changes further suggest that RPW larvae may employ metabolic processes to counteract the external immune-active compound PBQ toxicity by regulating the expression levels of detoxifying enzyme-encoding genes, such as cytochrome P450 (CYP450), glutathione S-transferase (GST), and ATP-binding cassette transporter (ABC). Our research provides potential novel strategies for pest control by targeting insect metabolic detoxification systems. Full article
(This article belongs to the Special Issue Invasive Pests: Bionomics, Damage, and Management)
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18 pages, 8061 KB  
Article
Transcriptomic Insights into the Dual-Modulatory Role of EGCG in Alleviating Glyphosate-Induced Oxidative Stress in Cucumis melo
by Qiuying Lu, Dongmiao Zhai, Yaxian Wu, Yihu Mao, Golam Jalal Ahammed, Xinzhong Zhang, Jingbo Yu and Xin Li
Int. J. Mol. Sci. 2025, 26(20), 9887; https://doi.org/10.3390/ijms26209887 (registering DOI) - 11 Oct 2025
Viewed by 52
Abstract
Glyphosate is one of the most widely used herbicides in agricultural, horticultural, and urban environments. However, its residue accumulation and oxidative damage pose serious threats to crop health and food safety. In this study, we evaluated the potential of epigallocatechin gallate, a natural [...] Read more.
Glyphosate is one of the most widely used herbicides in agricultural, horticultural, and urban environments. However, its residue accumulation and oxidative damage pose serious threats to crop health and food safety. In this study, we evaluated the potential of epigallocatechin gallate, a natural polyphenol derived from tea, to alleviate glyphosate-induced stress in melon (Cucumis melo L.). LC-MS/MS analysis revealed that EGCG significantly reduced glyphosate residues in plant tissues. Transcriptome analysis indicated that glyphosate induced extensive transcriptional reprogramming, activating genes involved in detoxification and antioxidant defense. Co-treatment with glyphosate and EGCG partially mitigated this stress response and redirected gene expression toward secondary metabolic pathways, particularly flavonoid and phenylalanine biosynthesis. Under herbicide stress, EGCG restored the transcription of key flavonoid biosynthetic genes, including PAL, C4H, CHI, and OMT. Meanwhile, EGCG also modulated the expression of APX, SOD, and GST, suggesting a selective effect on antioxidant systems. Co-expression network analysis identified key hub genes associated with oxidative stress and flavonoid metabolism. These findings demonstrate the dual regulatory role of EGCG in suppressing acute oxidative stress while enhancing metabolic adaptability, highlighting its potential as a natural additive for reducing herbicide residues in fruit crops. Full article
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21 pages, 2777 KB  
Article
Protective Effects of Cuscuta australis Against CCl4-Induced Hepatic Injury in Rats: Antioxidant, Anti-Inflammatory, and In Silico Insights
by Hanen Baccari, Arij Bedoui, Anouar Feriani, Amal Bouallegue, Nihad Sahri, Sohaib Khatib, Mohamed Kharrat, Nizar Tlili, Mansour Sobeh, Moez Amri and Zouhaier Abbes
Pharmaceuticals 2025, 18(10), 1524; https://doi.org/10.3390/ph18101524 - 10 Oct 2025
Viewed by 165
Abstract
Background/Objectives: The search for new bioactive molecules increasingly extends beyond conventional medicinal plants, highlighting the importance of exploring alternative botanical sources. Parasitic plants represent a promising but underexploited reservoir of pharmacologically relevant compounds. Cuscuta australis (CA), a parasitic species with a history of [...] Read more.
Background/Objectives: The search for new bioactive molecules increasingly extends beyond conventional medicinal plants, highlighting the importance of exploring alternative botanical sources. Parasitic plants represent a promising but underexploited reservoir of pharmacologically relevant compounds. Cuscuta australis (CA), a parasitic species with a history of traditional use, remains poorly characterized. This study aimed to investigate its phytochemical composition and evaluate its antioxidant, anti-inflammatory, and hepatoprotective properties. Methods: The phytochemical profile of CA extract was characterized by LC-MS. Antioxidant capacity was assessed using DPPH and ABTS assays. In vivo hepatoprotection was evaluated in male rats subjected to CCl4-induced hepatotoxicity and treated orally with CA (30 or 60 mg/kg body weight). Biochemical, lipid, oxidative stress, and histological parameters were determined. Molecular docking was conducted to predict the binding of major identified compounds against selected protein targets. Results: CA significantly and dose-dependently improved biochemical and histological markers. At 60 mg/kg, ALT, AST, ALP, and bilirubin were reduced by 32%, 33%, 63%, and 51%, respectively. Lipid metabolism was improved by decreased TC, TG, and LDL-C with increased HDL-C. Antioxidant defense was enhanced through elevated CAT, SOD, and GPx activities, accompanied by reduced MDA levels. TNF-α and IL-6 decreased by 48% and 53%, respectively. Histopathology confirmed hepatoprotection and reduced fibrosis. Docking studies revealed strong binding affinities (−7.07 to −19.20 kcal/mol) for several metabolites, notably quercetin glucoside, diosmetin glucoside, caffeic acid glucoside, feruloylquinic acid, and isorhamnetin glucoside, against CYP450, IL-2, TNF-α, and IL-6. Conclusions: These findings demonstrate that C. australis is a promising source of bioactive compounds with hepatoprotective, antioxidant, antihyperlipidemic, and anti-inflammatory effects, supporting its potential as a natural therapeutic agent. Full article
(This article belongs to the Section Natural Products)
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23 pages, 8747 KB  
Article
Dietary Acrylamide Induces Depression via SIRT3-Mediated Mitochondrial Oxidative Injury: Evidence from Multi-Omics and Mendelian Randomization
by Lele Zhang, Shun Li, Shengjie Liu and Zhenjie Wang
Curr. Issues Mol. Biol. 2025, 47(10), 836; https://doi.org/10.3390/cimb47100836 - 10 Oct 2025
Viewed by 102
Abstract
Acrylamide (ACR), a common dietary pro-oxidant generated in heat-processed foods, disrupts mitochondrial redox homeostasis. While its neurotoxic effects are recognized, the role of ACR in depression remains poorly understood. We hypothesized that dietary ACR exposure promotes depression via SIRT3-dependent mitochondrial oxidative injury. Through [...] Read more.
Acrylamide (ACR), a common dietary pro-oxidant generated in heat-processed foods, disrupts mitochondrial redox homeostasis. While its neurotoxic effects are recognized, the role of ACR in depression remains poorly understood. We hypothesized that dietary ACR exposure promotes depression via SIRT3-dependent mitochondrial oxidative injury. Through an integrative approach combining network toxicology (to prioritize candidate targets), transcriptomics, and Mendelian randomization (MR), we identified SIRT3 as the central mediator. Molecular dynamics simulations demonstrated that ACR’s primary metabolite glycidamide (GA) formed more stable and rigid complexes with key targets (including SIRT3, TP53, CASP3, JUN, PTGS2, and PTK2) than ACR itself, as evidenced by superior structural stability, reduced flexibility, and enhanced hydrogen bonding. Transcriptomic analysis of the human prefrontal cortex (datasets GSE54567 and GSE54568) revealed mitochondrial deacetylase sirtuin 3 (SIRT3) as the most significantly suppressed gene in depression (p < 0.01), suggesting an impairment in Superoxide dismutase 2 (SOD2)-mediated antioxidant defense. MR further established JUN and PTK2 as causal genetic risk factors for depression (JUN: Odds Ratio (OR) = 1.029, 95% CI = 1.002–1.057; PTK2: OR = 1.040, 95% CI = 1.005–1.076; JUN (OR) = 1.048, 95% CI = 1.021–1.076, PTK2: OR = 1.073, 95% CI = 1.039–1.109) of each MR estimates, while other candidates lacked genetic support. Our findings demonstrate that ACR induces depression primarily through SIRT3 suppression, activating JUN/PTK2 pathways, suggesting its potential role in environmental toxicant-induced redox imbalance. Full article
(This article belongs to the Special Issue Feature Papers in Molecular Medicine 2025)
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27 pages, 5211 KB  
Article
Innovative Wound Healing Utilizing Bioactive Fabrics Functionalized with Tormentillae rhizoma Extract: An In Vivo Study on Wistar Albino Rats
by Aleksandra Ivanovska, Jovana Bradić, Uroš Gašić, Filip Nikolić, Katarina Mihajlovski, Vladimir Jakovljević and Anica Petrović
Textiles 2025, 5(4), 46; https://doi.org/10.3390/textiles5040046 - 10 Oct 2025
Viewed by 90
Abstract
This paper presents an innovative protocol for fabric functionalization using Tormentillae rhizoma extract, the chemical composition of which was proved via LC/MS analysis. The extract demonstrated antioxidant activity > 99%, and antibacterial efficacy against E. coli and S. aureus > 99%. Cotton, wool, [...] Read more.
This paper presents an innovative protocol for fabric functionalization using Tormentillae rhizoma extract, the chemical composition of which was proved via LC/MS analysis. The extract demonstrated antioxidant activity > 99%, and antibacterial efficacy against E. coli and S. aureus > 99%. Cotton, wool, polyamide, and cellulose acetate were functionalized with the prepared extract, all showing > 90% antioxidant activity. Functionalized cotton, wool, and polyamide exhibited > 99% antibacterial activity against both bacteria. Based on these findings and the fabrics’ ability to release bioactive compounds, functionalized cotton and polyamide fabrics having excellent bioactivity but a lower ability to release bioactive compounds can serve as protective fabrics for people with sensitive skin prone to wounds, and various products for hospitals. Functionalized wool was identified as the most suitable wound dressing for in vivo preclinical investigation on Wistar albino rats. The obtained results showcased a wound-healing rate of 95.54%, and hydroxyproline content of 8.08 µg/mg dry tissue for rats treated with functionalized wool. Compared to negative, positive, and a group of rats treated with non-functionalized wool, those treated with functionalized wool demonstrated elevated values of tissue redox state parameters, superoxide dismutase (SOD) and catalase (CAT), and a notable reduction in thiobarbituric acid reactive substances (TBARS) value. Analysis of the blood samples of rats treated with functionalized wool indicated increased levels of antioxidant defense system parameters (SOD and CAT) and decreased pro-oxidative markers superoxide (O2) and TBARS. Further clinical trials are needed to validate these findings. Full article
(This article belongs to the Special Issue Advances of Medical Textiles: 2nd Edition)
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16 pages, 6997 KB  
Article
Ascorbic Acid Priming Boosts Cotton Seed Chilling Tolerance via Membrane Stability and Antioxidant Cycles
by Peng Han, Haixia Ma, Lu Lu, Jincheng Zhu, Xinhui Nie, Jianwei Xu and Zhibo Li
Plants 2025, 14(20), 3122; https://doi.org/10.3390/plants14203122 - 10 Oct 2025
Viewed by 172
Abstract
Low-temperature stress severely restricts cotton seed germination and seedling establishment, especially in early spring. Ascorbic acid (AsA) priming is a promising strategy to enhance stress tolerance, yet its mechanisms in cotton remain unclear. This study examined the effects of AsA priming on seed [...] Read more.
Low-temperature stress severely restricts cotton seed germination and seedling establishment, especially in early spring. Ascorbic acid (AsA) priming is a promising strategy to enhance stress tolerance, yet its mechanisms in cotton remain unclear. This study examined the effects of AsA priming on seed germination at 15 °C. Seeds were treated with 0, 25, 50, or 100 mg/L AsA for 3, 6, 12, or 24 h. Results showed that 50 mg/L AsA for 24 h significantly improved germination potential, rate, index, and promptness index (p < 0.05). Compared with water-primed seeds, AsA-primed seeds exhibited greater radicle length (+17.67%) and fresh weight (+136.26%) under chilling stress. This treatment markedly increased antioxidant enzyme activities, including POD (+196.74%), SOD (+43.81%), and CAT (+49.43%), while also promoting the accumulation of Ascorbate–Glutathione cycle-related enzymes and metabolites, thereby reinforcing the antioxidant defense system. Multidimensional statistical analyses further indicated that AsA enhanced root growth by stimulating antioxidant defenses while inducing a trade-off that slightly reduced fresh weight, suggesting a balance between growth and oxidative protection. Overall, AsA priming improves cotton seed cold tolerance by activating enzymatic and non-enzymatic antioxidant systems and mediating a growth–defense trade-off, underscoring its potential as an effective priming agent for early sowing under low-temperature stress. Full article
(This article belongs to the Special Issue Plant Functioning Under Abiotic Stress)
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20 pages, 3748 KB  
Article
Identification of the Antagonistic Fungus Diaporthe phoenicicola Against Rhododendron Brown Spot Disease and Its Disease Control and Plant Growth-Promoting Efficacy
by Yajiao Sun, Jian Liu, Huali Li, Guangyao Zhu, Chengfen Zhu, Junjia Lu and Yunqiang Ma
J. Fungi 2025, 11(10), 728; https://doi.org/10.3390/jof11100728 - 10 Oct 2025
Viewed by 191
Abstract
To explore superior biocontrol resources for Rhododendron brown spot disease, five antagonistic fungal strains exhibiting significant inhibitory activity against the pathogen responsible for RBS were isolated from healthy Rhododendron hybridum Ker Gawl leaves. Among them, strain DJW5-2-1 demonstrated the highest inhibition rate, reaching [...] Read more.
To explore superior biocontrol resources for Rhododendron brown spot disease, five antagonistic fungal strains exhibiting significant inhibitory activity against the pathogen responsible for RBS were isolated from healthy Rhododendron hybridum Ker Gawl leaves. Among them, strain DJW5-2-1 demonstrated the highest inhibition rate, reaching 63.88% against the pathogenic fungus. Based on morphological characteristics and multigene phylogenetic analysis (ITS, β-tubulin, and tef1-α), DJW5-2-1 was identified as Diaporthe phoenicicola (Traverso & Spessa) Udayanga, Crous & K.D. Hyde. Dual culture assays further confirmed its broad-spectrum antifungal activity, with inhibition rates ranging from 39.15% to 72.54% against various phytopathogenic fungi. Biochemical analyses revealed that DJW5-2-1 secretes multiple extracellular enzymes and exhibits plant growth-promoting traits. In both in vitro and potted plant efficacy assays, the biocontrol efficacy of strain DJW5-2-1 against RBS was 49.67% and 50.61%, respectively, indicating that strain DJW5-2-1 exhibits a certain level of control efficacy against RBS. Through pot experiments, we found that strain DJW5-2-1 could promote the growth of rhododendron seedlings and significantly increase growth indicators. Among these indicators, the growth-promoting rates of plant height and stem diameter were 15.27% and 41.27%, respectively. Moreover, DJW5-2-1 contributed to improved host resistance by elevating the activities of key defense-related enzymes, including superoxide dismutase (SOD), peroxidase (POD), catalase (CAT), and polyphenol oxidase (PPO). Taken together, these findings suggest that strain DJW5-2-1 represents a promising microbial agent for the integrated control of RBS and the development of fungal-based biofertilizers. Further investigation is warranted to assess its performance under field conditions and elucidate its underlying mechanisms of action. Full article
(This article belongs to the Section Fungal Pathogenesis and Disease Control)
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Review
The Role of Inflammasomes in LPS and Gram-Negative Bacterial Sepsis
by Eduardo Hernández-Cuellar, Kohsuke Tsuchiya, Oscar Medina-Contreras and Ricardo Valle-Ríos
J. Clin. Med. 2025, 14(19), 7102; https://doi.org/10.3390/jcm14197102 - 9 Oct 2025
Viewed by 343
Abstract
Background/Objectives: Sepsis is a life-threatening condition characterized by an uncontrolled immune response due to systemic infections. It is responsible for millions of deaths worldwide. Although inflammasomes play an important role in host defense, they have a detrimental role in sepsis induced by [...] Read more.
Background/Objectives: Sepsis is a life-threatening condition characterized by an uncontrolled immune response due to systemic infections. It is responsible for millions of deaths worldwide. Although inflammasomes play an important role in host defense, they have a detrimental role in sepsis induced by LPS or Gram-negative bacteria. We aimed to revise the molecular mechanisms of inflammasome activation in sepsis by LPS and Gram-negative bacteria other than cytokine release as treatments blocking TNF-α and IL-1 cytokines have been ineffective even though cytokine storm is associated with lethality. Results: Studies with knockout mice deficient in inflammasome-derived cytokines have shown contrasting results on the role of these proinflammatory cytokines in the lethality of LPS- and Gram-negative-induced sepsis. However, DAMPs released after non-canonical inflammasome activation such as extracellular DNA, histones, HMGB1, and tissue factor result in disseminated-intravascular coagulation (DIC) and mortality in mice. Blocking these products in preclinical studies with animal models showed improved clinical scores and survival after LPS-induced sepsis or polymicrobial sepsis induced by Cecal Ligation and Puncture. Conclusions: Even though immunomodulatory drugs have shown inconclusive results as therapies for sepsis, blocking DAMPs associated with DIC may be considered for clinical trials in the future, especially in patients presenting biomarkers of coagulopathies. Full article
(This article belongs to the Special Issue Sepsis: New Insights into Diagnosis and Treatment)
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