Search Results (29)

Environmental pollution from organic dyes such as malachite green and rhodamine B poses significant threats to ecosystems and human health due to their toxic properties. The rapid detection of these contaminants with high sensitivity and selectivity is crucial and can be effectively achieved using nonlinear optical methods. In this study, we combine the Simplified Bond Hyperpolarizability Model (SBHM) and molecular docking (MD) simulations to investigate the Second-Harmonic Generation (SHG) intensity of organic dyes on a silicon (Si(001)) substrate for nanoscale pollutant detection. Our simulations show good agreement with rotational anisotropy (RA) SHG intensity experimental data across all polarization angles, with a total error estimate of 3%. We find for the first time that the SBHM not only identifies the different organic pollutant dyes on the surface, as in conventional SHG detection, but can also determine their relative orientation and different concentrations on the surface. Meanwhile, MD simulations reveal that rhodamine B shows a strong adsorption affinity of $-10.4\mathrm{kcal}/\mathrm{mol}$ to a single-layer graphene oxide (GO) substrate, primarily through $\pi$-$\pi$ stacking interactions (36 instances) and by adopting a perpendicular molecular orientation. These characteristics significantly enhance SHG sensitivity. A nonlinear susceptibility analysis reveals good agreement between the SBHM and group theory. The susceptibility tensors confirm that the dominant contributions to the SHG signal arise from both the molecular structure and the surface interactions. This underscores the potential of GO-coated silicon substrates for detecting trace levels of organic pollutants with interaction distances ranging from $3.75\AA$ to $5.81\AA$. This approach offers valuable applications in environmental monitoring, combining the sensitivity of SHG with the adsorption properties of GO for nanoscale detection. Full article

By combining molecular dynamics (MD) simulations and density functional theory (DFT), the influence of dye structure on the optical modulation properties of negative-mode guest–host liquid crystal (GHLC) systems was systematically investigated. Firstly, the reliability of the simulation method was validated by comparing the performance parameters of the GHLC system obtained from simulations with those from experimental results. Subsequently, a series of guest dye molecules, along with their mixtures with negative dielectric anisotropy mesogens, were designed and analyzed. This exploration focused on how variations in dye terminal chain lengths, substitution positions, and substituent group properties affect dye molecular geometry, dye alignment within the host, transition dipole orientation, absorption spectra, and electronic excitation properties. Our findings suggest that dye molecules with a flexible terminal chain substitution of five carbon atoms, positioned at the 2 and 6 locations on the anthraquinone core, exhibit higher order parameters, favorable for enhancing dichroic performance. Moreover, introducing different α-substituents further influences the dye orientation and electronic behavior within the host. These results highlight that structural modifications of anthraquinone-based dyes allow for the design of high-dichroic-ratio materials with customized absorption properties. Overall, our results provide a beneficial understanding of the structure–property relation in GHLC systems, offering valuable guidance for designing high-performance dye molecules and advanced optoelectronic materials in future research. Full article

We propose a nonlinear-optics-based nanosensor to detect malachite green (MG) contaminants on semiconductor interfaces such as silicon (Si). Applying the simplified bond hyperpolarizability model (SBHM), we simplified the second-harmonic generation (SHG) analysis of an MG-Si(111) surface and were able to validate our model by reproducing experimental rotational anisotropy (RA) SHG experiments. For the first time, density functional theory (DFT) calculations using ultrasoft pseudopotentials were implemented to obtain the molecular configuration and bond vector orientation required by the SBHM to investigate and predict the second-harmonic generation contribution for an MG-Si 001 surface. We show that the SBHM model significantly reduces the number of independent components in the nonlinear tensor of the MG-Si(111) interface, opening up the possibility for real-time and non-destructive contaminant detection at the nanoscale. In addition, we derive an explicit formula for the SHG far field, demonstrating its applicability for various input polarization angles. Finally, an RASHG signal can be enhanced through a simulated photonic crystal cavity up to 4000 times for more sensitivity of detection. Our work can stimulate more exploration using nonlinear optical methods to detect and analyze surface-bound contaminants, which is beneficial for environmental monitoring, especially for mitigating pollution from textile dyes, and underscores the role of nonlinear optics in real-time ambient-condition applications. Full article

We investigate the nanometrology of sub-nanometre particle sizes in industrially manufactured sodium silicate liquors at high pH using time-resolved fluorescence anisotropy. Rather than the previous approach of using a single dye label, we investigate and quantify the advantages and limitations of multiplexing two fluorescent dye labels. Rotational times of the non-binding rhodamine B and adsorbing rhodamine 6G dyes are used to independently determine the medium microviscosity and the silicate particle radius, respectively. The anisotropy measurements were performed on the range of samples prepared by diluting the stock solution of silicate to concentrations ranging between 0.2 M and 2 M of NaOH and on the stock solution at different temperatures. Additionally, it was shown that the particle size can also be measured using a single excitation wavelength when both dyes are present in the sample. The recovered average particle size has an upper limit of 7.0 ± 1.2 Å. The obtained results were further verified using small-angle X-ray scattering, with the recovered particle size equal to 6.50 ± 0.08 Å. To disclose the impact of the dye label on the measured complex size, we further investigated the adsorption state of rhodamine 6G on silica nanoparticles using molecular dynamics simulations, which showed that the size contribution is strongly impacted by the size of the nanoparticle of interest. In the case of the higher radius of curvature (less curved) of larger particles, the size contribution of the dye label is below 10%, while in the case of smaller and more curved particles, the contribution increases significantly, which also suggests that the particles of interest might not be perfectly spherical. Full article

The applications of liquid crystals in the field of renewable, clean and sustainable technologies of energy storage are of utmost importance at present. This paper delves into dielectric spectroscopic studies of a weakly polar nematic liquid crystal (NLC) enriched with an anthraquinone dye. The primary objective is to assess the impact of increasing dye concentrations on various properties. Anthraquinone dye has been found to increase the dielectric permittivity of weakly polar NLC, leading to a 4.7-fold increase in dielectric anisotropy. Simultaneously, a reduction of around 11% in threshold and operating voltages of the NLC has also been recorded after using dye as the guest material. The added dipolar contributions provided by dye molecules have been attributed to this surplus permittivity. The NLC has been found to have an approximately 54% faster response to the applied field. The intrinsic polarization field of dye molecules accelerates nearby LC molecule reorientation, leading to a 56.5% faster fall time and a 29.8% faster rise time in a 3.0 wt% dye-doped LC cell. These experimental results have been validated via computational studies as well. The simulation results about dipole moment and polarizability provide robust support for our experimental results. Such composites evince their potential for energy storage and 5G communication technologies with adjustable impedance and permittivity. Full article

Iodine is commonly used as a dichroic material in polarizing films, while dichroic dyes are employed when high heat resistance is necessary. Direct dyes, which can be applied to poly(vinyl alcohol) (PVA) in an acidic environment, are the most popular; however, their hydrogen bonding interaction with the PVA chain can weaken in high-humidity conditions, leading to a potential change in color value or polarization property. Reactive dyes offer a promising alternative for use in high-humidity environments. In this study, five novel reactive dyes were synthesized and used to prepare dye-based polarizing films. The dichroic ratios, order parameters, and transition moments of the reactive dyes were calculated and compared to those of corresponding direct dyes. Molecular orbital calculations indicated minimal effects on the optical anisotropy of the polarizing films due to the transition moments of the reactive dyes remaining close to their molecular axes. As a result, the dichroic ratios of the polarizing films were mainly dependent on the orientation of the dyes towards their stretching direction, and showed a similar behavior compared to direct dyes. Under high-temperature and high-humidity conditions, the polarizing film using reactive dyes showed superior durability compared to the direct dye-based film. Full article

The increase in economic activities and the industrialization of countries have caused the growth of pollution created by waste and sewage. In particular, the textile industry produces large amounts of liquid contaminants due to the large amounts of water employed during the production of fabrics. In addition, dyes are another category of organic compound used in many industries, such as pharmaceuticals and rubber making. The presence of limitations in physico-chemical methods for the degradation of various dyes has stimulated the interest of researchers worldwide. One of the most economical ways is the use of photocatalytic decomposition under UV light radiation by green nanoparticles (NPs). In recent years, various metal NPs have been made using the green method that is cost-effective, eco-friendly, safe, and simple. Selenium (Se) is a crucial semiconductor metal that is widely utilized for its outstanding photovoltaic and optoelectronic attributes. Due to the excellent physical characteristics of Se, such as thermo-conductivity, anisotropy, and high photoconductivity, it has been used for removing various organic dyes. Hence, green SeNPs have attracted much attention in the catalytic decomposition process. The current review focuses on providing comprehensive studies concerning the degradation or reduction of various organic dyes through green SeNPs as an effective and efficient method and their mechanisms. It highlights the importance of utilizing green chemistry and catalytic properties. The aim is to benefit researchers from both academic and industrial backgrounds. Full article

The carbon dioxide-assisted polymer compression method is used to create porous polymer products with laminated fiber sheets that are crimped in the presence of carbon dioxide. In this method, fibers are oriented in the sheet-spread direction, and the intersections of the upper and lower fibers are crimped, leading to several intersections within the porous product. This type of orientation in a porous material is anisotropic. A dye solution was injected via a syringe into a compression product made of poly(ethylene terephthalate) nonwoven fabric with an average fiber diameter of 8 μm. The anisotropy of permeation was evaluated using the aspect ratio of the vertical and horizontal permeation distances of a permeation area. The aspect ratio decreased monotonically with decreasing porosity; it was 2.73 for the 80-ply laminated product with a porosity of 0.63 and 2.33 for the 160-ply laminated product with a porosity of 0.25. A three-dimensional structural analysis using X-ray computed tomography revealed that as the compression ratio increased, the fiber-to-fiber connection increased due to the increase in adhesion points, resulting in decreased anisotropy of permeation. The anisotropy of permeation is essential data for analyzing the sustained release behavior of drug-loaded tablets for future fabrication. Full article

The flavin derivatives 10-methyl-isoalloxazine (MIA) and 6-fluoro-10-methyl-isoalloxazine (6F-MIA) were incorporated in two alternative metal-organic frameworks, (MOFs) MIL-53(Al) and MOF-5. We used a post-synthetic, diffusion-based incorporation into microcrystalline MIL-53 powders with one-dimensional (1D) pores and an in-situ approach during the synthesis of MOF-5 with its 3D channel network. The maximum amount of flavin dye incorporation is 3.9 wt% for MIA@MIL-53(Al) and 1.5 wt% for 6F-MIA@MIL-53(Al), 0.85 wt% for MIA@MOF-5 and 5.2 wt% for 6F-MIA@MOF-5. For the high incorporation yields the probability to have more than one dye molecule in a pore volume is significant. As compared to the flavins in solution, the fluorescence spectrum of these flavin@MOF composites is broadened at the bathocromic side especially for MIA. Time-resolved spectroscopy showed that multi-exponential fluorescence lifetimes were needed to describe the decays. The fluorescence-weighted lifetime of flavin@MOF of 4 ± 1 ns also corresponds to those in solution but is significantly prolonged compared to the solid flavin dyes with less than 1 ns, thereby confirming the concept of “solid solutions” for dye@MOF composites. The fluorescence quantum yield (Φ_F) of the flavin@MOF composites is about half of the solution but is significantly higher compared to the solid flavin dyes. Both the fluorescence lifetime and quantum yield of flavin@MOF decrease with the flavin loading in MIL-53 due to the formation of various J-aggregates. Theoretical calculations using plane-wave and QM/MM methods are in good correspondence with the experimental results and explain the electronic structures as well as the photophysical properties of crystalline MIA and the flavin@MOF composites. In the solid flavins, π-stacking interactions of the molecules lead to a charge transfer state with low oscillator strength resulting in aggregation-caused quenching (ACQ) with low lifetimes and quantum yields. In the MOF pores, single flavin molecules represent a major population and the computed MIA@MOF structures do not find π-stacking interactions with the pore walls but only weak van-der-Waals contacts which reasons the enhanced fluorescence lifetime and quantum yield of the flavins in the composites compared to their neat solid state. To analyze the orientation of flavins in MOFs, we measured fluorescence anisotropy images of single flavin@MOF-5 crystals and a static ensemble flavin@MIL53 microcrystals, respectively. Based on image information, anisotropy distributions and overall curve of the time-resolved anisotropy curves combined with theoretical calculations, we can prove that all fluorescent flavins species have a defined and rather homogeneous orientation in the MOF framework. In MIL-53, the transition dipole moments of flavins are orientated along the 1D channel axis, whereas in MOF-5 we resolved an average orientation that is tilted with respect to the cubic crystal lattice. Notably, the more hydrophobic 6F-MIA exhibits a higher degree order than MIA. The flexible MOF MIL-53(Al) was optimized essentially to the experimental large-pore form in the guest-free state with QuantumEspresso (QE) and with MIA molecules in the pores the structure contracted to close to the experimental narrow-pore form which was also confirmed by PXRD. In summary, the incorporation of flavins in MOFs yields solid-state materials with enhanced rigidity, stabilized conformation, defined orientation and reduced aggregations of the flavins, leading to increased fluorescence lifetime and quantum yield as controllable photo-luminescent and photo-physical properties. Full article

Creating stimulus-sensitive smart catalysts capable of decomposing organic dyes with high efficiency is a critical task in ecology. Combining the advantages of photoactive piezoelectric nanomaterials and ferroelectric polymers can effectively solve this problem by collecting mechanical vibrations and light energy. Using the electrospinning method, we synthesized hybrid polymer-inorganic nanocomposite fiber membranes based on polyvinylidene fluoride (PVDF) and bismuth ferrite (BFO). The samples were studied by scanning electron microscope (SEM), Fourier-transform infrared spectroscopy (FTIR), total transmittance and diffuse reflectance, X-ray photoelectron spectroscopy (XPS), differential scanning calorimetry (DSC), thermogravimetric analysis (TGA), vibrating-sample magnetometer (VSM), and piezopotential measurements. It has been demonstrated that the addition of BFO leads to an increase in the proportion of the polar phase from 86.5% to 96.1% due to the surface ion–dipole interaction. It is shown that the composite exhibits anisotropy of magnetic properties depending on the orientation of the magnetic field. The results of piezo-photocatalytic experiments showed that under the combined action of ultrasonic treatment and irradiation with both visible and UV light, the reaction rate increased in comparison with photolysis, sonolysis, and piezocatalysis. Moreover, for PVDF/BFO, which does not exhibit photocatalytic activity, under the combined action of light and ultrasound, the reaction rate increases by about 3× under UV irradiation and by about 6× under visible light irradiation. This behavior is explained by the piezoelectric potential and the narrowing of the band gap of the composite due to mechanical stress caused by the ultrasound. Full article

Red blood cell (RBC) aggregation and deformation are governed by the molecular processes occurring on the membrane. Since several social important diseases are accompanied by alterations in RBC aggregation and deformability, it is important to develop a diagnostic parameter of RBC membrane structural integrity and stability. In this work, we propose membrane microviscosity assessed by time-resolved fluorescence anisotropy of the lipophilic PKH26 fluorescent probe as a diagnostic parameter. We measured the fluorescence decay curves of the PKH26 probe in the RBC membrane to establish the optimal parameters of the developed fluorescence assay. We observed a complex biphasic profile of the fluorescence anisotropy decay characterized by two correlation times corresponding to the rotational diffusion of free PKH26, and membrane-bounded molecules of the probe. The developed assay allowed us to estimate membrane microviscosity ${\eta }_m$ in the range of 100–500 cP depending on the temperature, which paves the way for assessing RBC membrane properties in clinical applications as predictors of blood microrheological abnormalities. Full article

High-performance supramolecular polyimide systems were synthesized via a simple and innovative approach using two types of azo-chromophores, leading to concomitant special properties: high thermostability, the ability to be processed in the form of films with high flexibility, adequate morphological features, and good structuring capacity via phase mask ultraviolet (UV) laser irradiation, induced by the presence of the azo groups (–N=N–). The dimension and the anisotropy degree of the micro/nano patterns obtained on the surface of the flexible films (determined by atomic force microscopy) depend on the azo-dye type used in the supramolecular azopolyimide synthesis, which were higher when the azo-chromophore containing a –cyano group (–C≡N) was used. The molecular dynamics method, an excellent tool for an in-depth examination of the intermolecular interactions, was used to explain the morphological aspects. Energetic, dynamic and structural parameters were calculated for the two systems containing azo-chromophores, as well as for the pristine polymer system. It was highlighted that the van der Waals forces make a major contribution to the intermolecular interactions. The results from the combination of the dynamic analysis and the concentration profile explain the better mobility of the polyimide chains with a maximum content of azo groups in the cis configuration compared to the other systems. Taking all these data into account, the surfaces of the films can be tuned as required for the proposed applications, namely as substrates for flexible electronis. Full article

The influence of chitosan (CS) and amphiphilic polymers (AP: pluronic F108 and polyvinylpyrrolidone (PVP)) on the photocatalytic activity of rose bengal (RB) in a model reaction of tryptophan photo-oxidation in phosphate-buffered saline (PBS) was studied. It was shown that in the presence of CS, the effective rate constant k_eff of tryptophan photo-oxidation catalyzed by RB in PBS solution decreases by a factor of two. This is due to the ionic interaction of the RB with the chitosan. Rose bengal in a slightly acidic environment (pH 4.5) passes into a neutral lactone form, which sharply reduces the photosensitizing properties of the dye. It was demonstrated that the introduction of AP into a solution containing RB and CS prevents direct interaction between RB and CS. This is evidenced by the presence of photocatalytic activity of the dye in the RB-AP-CS systems, as well as bathochromic shifts of the main absorption bands of the dye, and an increase in the optical density and luminescence intensity of the RB when AP is introduced into a buffer solution containing RB and chitosan. The presence of RB-CS and RB-AP interaction in aqueous and PBS media is confirmed by the increase in the degree of fluorescence anisotropy (r) of these binary systems. In an aqueous solution, the value of r for the RB-F108-CS system decreases by a factor of 3.5 (compared to the value of r for the RB-CS system), which is associated with the localization of the dye in pluronic micelles. In PBS, the fluorescence anisotropy is practically the same for all systems, which is related to the stability of the dye structure in this medium. The presence of interaction between RB and AP in aqueous solutions was confirmed by the proton NMR method. In addition, the formation of RB-F108 macromolecular complexes, which form associates during solution concentration (in particular, during evaporation), was shown by AFM. Such RB-AP-CS systems may be promising for practical application in the treatment of local foci of infections by aPDT. Full article

Efficient detection and observation of dynamic RNA changes remain a tremendous challenge. However, the continuous development of fluorescence applications in recent years enhances the efficacy of RNA imaging. Here we summarize some of these developments from different aspects. For example, single-molecule fluorescence in situ hybridization (smFISH) can detect low abundance RNA at the subcellular level. A relatively new aptamer, Mango, is widely applied to label and track RNA activities in living cells. Molecular beacons (MBs) are valid for quantifying both endogenous and exogenous mRNA and microRNA (miRNA). Covalent binding enzyme labeling fluorescent group with RNA of interest (ROI) partially overcomes the RNA length limitation associated with oligonucleotide synthesis. Forced intercalation (FIT) probes are resistant to nuclease degradation upon binding to target RNA and are used to visualize mRNA and messenger ribonucleoprotein (mRNP) activities. We also summarize the importance of some fluorescence spectroscopic techniques in exploring the function and movement of RNA. Single-molecule fluorescence resonance energy transfer (smFRET) has been employed to investigate the dynamic changes of biomolecules by covalently linking biotin to RNA, and a focus on dye selection increases FRET efficiency. Furthermore, the applications of fluorescence assays in drug discovery and drug delivery have been discussed. Fluorescence imaging can also combine with RNA nanotechnology to target tumors. The invention of novel antibacterial drugs targeting non-coding RNAs (ncRNAs) is also possible with steady-state fluorescence-monitored ligand-binding assay and the T-box riboswitch fluorescence anisotropy assay. More recently, COVID-19 tests using fluorescent clustered regularly interspaced short palindromic repeat (CRISPR) technology have been demonstrated to be efficient and clinically useful. In summary, fluorescence assays have significant applications in both fundamental and clinical research and will facilitate the process of RNA-targeted new drug discovery, therefore deserving further development and updating. Full article

Technologies that predict the sources of substances diffused in the atmosphere, ocean, and chemical plants are being researched in various fields. The flows transporting such substances are typically in turbulent states, and several problems including the nonlinearity of turbulence must be overcome to enable accurate estimations of diffusion-source location from limited observation data. We studied the feasibility of machine learning, specifically convolutional neural networks (CNNs), to the problem of estimating the diffusion distance from a point source, based on two-dimensional, instantaneous information of diffused-substance distributions downstream of the source. The input image data for the learner are the concentration (or luminance of fluorescent dye) distributions affected by turbulent motions of the transport medium. In order to verify our approach, we employed experimental data of a fully developed turbulent channel flow with a dye nozzle, wherein we attempted to estimate the distances between the dye nozzle and downstream observation windows. The inference accuracy of four different CNN architectures were investigated, and some achieved an accuracy of more than 90%. We confirmed the independence of the inference accuracy on the anisotropy (or rotation) of the image. The trained CNN can recognize the turbulent characteristics for estimating the diffusion source distance without statistical processing. The learners have a strong dependency on the condition of learning images, such as window size and image noise, implying that learning images should be carefully handled for obtaining higher generalization performance. Full article