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Keywords = factor analysis of mixed data (FAMD)

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24 pages, 5259 KB  
Article
Morpho-Agronomic Characterization of an Unexploited Germplasm Collection of Cauliflower (Brassica oleracea var. botrytis (L.)) from Spain
by Eric Prendes-Rodríguez, Alicia Iborra, Carla Guijarro-Real, Adrián Rodríguez-Burruezo and Ana Fita
Plants 2025, 14(18), 2919; https://doi.org/10.3390/plants14182919 - 19 Sep 2025
Viewed by 535
Abstract
Cauliflower landraces (Brassica oleracea var. botrytis) safeguard allelic diversity for adaptation, yet their phenotypic breadth under winter field conditions remains under-documented. We evaluated 69 Spanish landraces and two commercial checks from the COMAV-UPV genebank using 15 quantitative and 21 qualitative descriptors. [...] Read more.
Cauliflower landraces (Brassica oleracea var. botrytis) safeguard allelic diversity for adaptation, yet their phenotypic breadth under winter field conditions remains under-documented. We evaluated 69 Spanish landraces and two commercial checks from the COMAV-UPV genebank using 15 quantitative and 21 qualitative descriptors. Seed viability ranged from 0 to 92%, and mature plants showed wide ranges in stem length (coefficient of variation ≈ 72%), leaf size, and head weight (100–723 g). Six curd-colour classes—including uncommon purple and Romanesco green—were recorded. Most accessions (>88%) required more than 120 days from sowing to harvest, but a distinct subset (12%) matured within 60–120 days. Plant stature tended to be positively associated with head mass, whereas highly branched inflorescences matured earlier. Variation was dominated by curd size and plant architecture. Multivariate analyses—principal component analysis for quantitative traits, multiple correspondence analysis for qualitative traits, factor analysis of mixed data, and clustering of FAMD scores by k-means—resolved three phenotypic clusters spanning a gradient of curd size/architecture and plant stature. The collection includes accessions with compact curds, earliness, or distinctive pigmentation that are immediately useful for breeding and for prioritizing regeneration. These results provide a phenotypic baseline for future genomic association studies and the development of cultivars adapted to winter production. Full article
(This article belongs to the Section Plant Genetic Resources)
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21 pages, 7485 KB  
Article
Endocarp Morphology of Premna (Lamiaceae) in Thailand and Its Taxonomic Significance
by Jiratthi Satthaphorn, Alan J. Paton, Pornsawan Sutthinon and Charan Leeratiwong
Plants 2025, 14(11), 1706; https://doi.org/10.3390/plants14111706 - 3 Jun 2025
Viewed by 1513
Abstract
Fruits and endocarps of 21 species within the genus Premna (Lamiaceae) in Thailand were examined using light (LM) and scanning electron microscopy (SEM) to evaluate taxonomic relevance. Overall, mature fruits were classified into two types: fully developed mericarp (fruit type I) and partly [...] Read more.
Fruits and endocarps of 21 species within the genus Premna (Lamiaceae) in Thailand were examined using light (LM) and scanning electron microscopy (SEM) to evaluate taxonomic relevance. Overall, mature fruits were classified into two types: fully developed mericarp (fruit type I) and partly developed mericarp (fruit type II), with three shape patterns: broadly obovoid, narrowly obovoid, and clavoid. Fruit size ranged from 1.52 to 7.48 mm in length and 0.98 to 7.71 mm in width. In LM investigations, the endocarps were classified into three types based on the presence and shape of the protruding structure: saccate-like (protrusion type I), thorn-like (protrusion type II), and no protrusion (protrusion type III). The examination of endocarps under SEM showed that they consist of multilayers of sclerenchyma cells. The shape of the sculpturing cells on the endocarp surface can be divided into two patterns: irregular tetragonal and polygonal, with distinct or obscure straight cell faces. The morphological comparison and phenetic analyses using factor analysis of mixed data (FAMD) show that fruit and endocarp characteristics of Premna hold significant taxonomic value for distinguishing certain related species and classifying within the genus in Thailand. From the first two FAMD dimensions, fruit shape, shape of sculptured cells on the endocarp, and protrusion type of the endocarp are considered as the most significant contributing variables. The findings also support the reinstatement of species previously synonymized with P. serratifolia, namely P. cordifolia, P. paniculata, and P. punctulata. Full article
(This article belongs to the Special Issue Plant Taxonomy, Phylogeny, and Evolution)
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25 pages, 2439 KB  
Article
Enhancing Customer Segmentation Through Factor Analysis of Mixed Data (FAMD)-Based Approach Using K-Means and Hierarchical Clustering Algorithms
by Chukwutem Pinic Ufeli, Mian Usman Sattar, Raza Hasan and Salman Mahmood
Information 2025, 16(6), 441; https://doi.org/10.3390/info16060441 - 26 May 2025
Viewed by 2415
Abstract
In today’s data-driven business landscape, effective customer segmentation is crucial for enhancing engagement, loyalty, and profitability. Traditional clustering methods often struggle with datasets containing both numerical and categorical variables, leading to suboptimal segmentation. This study addresses this limitation by introducing a novel application [...] Read more.
In today’s data-driven business landscape, effective customer segmentation is crucial for enhancing engagement, loyalty, and profitability. Traditional clustering methods often struggle with datasets containing both numerical and categorical variables, leading to suboptimal segmentation. This study addresses this limitation by introducing a novel application of Factor Analysis of Mixed Data (FAMD) for dimensionality reduction, integrated with K-means and Agglomerative Clustering for robust customer segmentation. While FAMD is not new in data analytics, its potential in customer segmentation has been underexplored. This research bridges that gap by demonstrating how FAMD can harmonize mixed data types, preserving structural relationships that conventional methods overlook. The proposed methodology was tested on a Kaggle-sourced retail dataset comprising 3900 customers, with preprocessing steps including correlation ratio filtering (η ≥ 0.03), standardization, and encoding. FAMD reduced the feature space to three principal components, capturing 81.46% of the variance, which facilitated clearer segmentation. Comparative clustering analysis showed that Agglomerative Clustering (Silhouette Score: 0.52) outperformed K-means (0.51) at k = 4, revealing distinct customer segments such as seasonal shoppers and high spenders. Practical implications include the development of targeted marketing strategies, validated through heatmap visualizations and cluster profiling. This study not only underscores the suitability of FAMD for customer segmentation but also sets the stage for more nuanced marketing analytics driven by mixed-data methodologies. Full article
(This article belongs to the Special Issue Real-World Applications of Machine Learning Techniques)
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20 pages, 1578 KB  
Article
Characterization of Goat Production Systems in the Northern Dry Forest of Peru Using a Multivariate Analysis
by Victor Temoche, Irene Acosta, Pablo Gonzales, David Godoy Padilla, Omar Jibája, Juancarlos Cruz and Flor-Anita Corredor
Animals 2025, 15(4), 567; https://doi.org/10.3390/ani15040567 - 16 Feb 2025
Cited by 1 | Viewed by 1491
Abstract
Goat production in the dry forest of northern Peru is essential for rural livelihoods but remains poorly characterized regarding its productivity and sustainability. This study used multivariate techniques—a multiple correspondence analysis (MCA), principal component analysis (PCA), factor analysis of mixed data (FAMD), and [...] Read more.
Goat production in the dry forest of northern Peru is essential for rural livelihoods but remains poorly characterized regarding its productivity and sustainability. This study used multivariate techniques—a multiple correspondence analysis (MCA), principal component analysis (PCA), factor analysis of mixed data (FAMD), and hierarchical cluster analysis (HCA)—to analyze data from 284 producers in Tumbes, Piura, and Lambayeque. Surveys captured 48 variables (41 qualitative, seven quantitative) on productivity, socioeconomics, and management. The MCA explained 22.07% of the variability in two dimensions, while the PCA accounted for 63.9%, focusing on productivity and diversification. The FAMD integrated these variables, explaining 51.12% of variability across five dimensions, emphasizing socioeconomic and management differences. The HCA identified three clusters: cluster 1 featured intensive systems with advanced management and commercial focus, cluster 2 included extensive systems limited by water scarcity, and cluster 3 reflected semi-intensive systems with irrigation and diversified production. These findings provide a detailed understanding of goat systems in northern Peru, identifying opportunities to improve resource use and tailor strategies to enhance sustainability. The multivariate analysis proved effective in capturing the complexity of these systems, supporting productivity and improving livelihoods in rural areas. Full article
(This article belongs to the Section Animal System and Management)
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22 pages, 3690 KB  
Article
The Influence of Factors in Consumer Sustainable Auto-Enrolment Pensions
by Beata Świecka, Patrycja Kowalczyk-Rólczyńska, Sylwia Pieńkowska-Kamieniecka, Jakub Śledziowski and Paweł Terefenko
Sustainability 2025, 17(3), 1340; https://doi.org/10.3390/su17031340 - 6 Feb 2025
Cited by 2 | Viewed by 1945
Abstract
As pension benefits from statutory public schemes become less generous, and many countries face pension-savings crises, the willingness to participate in supplementary retirement saving instruments becomes crucial for sustainable financial well-being. The main objective of this article is to present how trust and [...] Read more.
As pension benefits from statutory public schemes become less generous, and many countries face pension-savings crises, the willingness to participate in supplementary retirement saving instruments becomes crucial for sustainable financial well-being. The main objective of this article is to present how trust and financial literacy influence the choice of sustainable auto-enrolment pension scheme as a private and supplementary pension savings. The study highlighted factors influencing participation in auto-enrollment and private supplementary pension savings. The study focuses mainly on financial literacy and trust. We used the CAWI method with 857 interviews in Poland—the first country in Central and Eastern Europe to introduce an auto-enrolment pension system. Our study uses multivariable data-mining tools, and several regression models were applied. We used Logistic Regression (LR), Multivariate Linear Regression (MLR), and Factor Analysis of Mixed Data (FAMD) to support the LR analysis. We propose four regression models. Our findings present that: 1. The lower the consumer’s knowledge level, the more their decisions are based on trust. 2. Trust in the state, rather than trust in financial institutions, plays a crucial role for people with low financial literacy, which is a critical factor in choosing the auto-enrolment option for pension savings. 3. Men had higher odds of auto-enrolment pension saving than women. 4. Employees of economic universities and academics had higher odds of participating in capital pension plans than those of general universities and non-academics. Our findings can signal to governments and policymakers about factors influencing the choice of auto-enrolment supplementary retirement savings. These findings strengthen the role of sustainable economic education. Full article
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18 pages, 2712 KB  
Article
Smart Coffee: Machine Learning Techniques for Estimating Arabica Coffee Yield
by Cleverson Henrique de Freitas, Rubens Duarte Coelho, Jéfferson de Oliveira Costa and Paulo Cesar Sentelhas
AgriEngineering 2024, 6(4), 4925-4942; https://doi.org/10.3390/agriengineering6040281 - 20 Dec 2024
Cited by 1 | Viewed by 2243
Abstract
Coffee is a global commodity, with Brazil being a major producer, particularly in the Minas Gerais state. This study applied machine learning to predict the Arabica coffee yield in the region, analyzing two groups of cultivars (G1 and G2) using data from 1993 [...] Read more.
Coffee is a global commodity, with Brazil being a major producer, particularly in the Minas Gerais state. This study applied machine learning to predict the Arabica coffee yield in the region, analyzing two groups of cultivars (G1 and G2) using data from 1993 to 2020. The Factor Analysis of Mixed Data (FAMD) was employed to explore the relationships between climatic factors, management practices, and the coffee yield. Four machine learning models, such as Multiple Linear Regression (MLR), Random Forest (RF), XGBoost (XGB), and Support Vector Machines (SVM) were calibrated and evaluated for yield prediction. The FAMD revealed complex interactions among variables, requiring four principal components to explain approximately 64.6% of the total variance. Management practices, such as the planting density and pruning, had a stronger influence on G1 cultivars, while G2 cultivars were more sensitive to climatic conditions, particularly the air temperature. Among the machine learning models, RF and XGB performed best in the yield estimation, whereas MLR and SVM were less effective, particularly for values above 60 bags ha−1 (1 bag = 60 kg). These findings underscore the variability in the yield across cultivars and demonstrate the potential of machine learning to guide tailored management strategies for different coffee cultivars. Full article
(This article belongs to the Special Issue The Future of Artificial Intelligence in Agriculture)
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15 pages, 5554 KB  
Article
Intergeneric Comparison of Staminal Trichomes in the Tribe Ipomoeeae (Convolvulaceae)
by Natthaphong Chitchak, Alyssa B. Stewart and Paweena Traiperm
Plants 2024, 13(15), 2050; https://doi.org/10.3390/plants13152050 - 25 Jul 2024
Cited by 4 | Viewed by 1940
Abstract
Hairs or trichomes distributed on the base of filaments in the morning glory family, known as staminal trichomes, differ from those found on other plant parts and have been recognized for their taxonomic value for over a century. In this study, our aim [...] Read more.
Hairs or trichomes distributed on the base of filaments in the morning glory family, known as staminal trichomes, differ from those found on other plant parts and have been recognized for their taxonomic value for over a century. In this study, our aim was to investigate the appearance of staminal trichomes in the tribe Ipomoeeae Hall. f., a significant tribe within the family Convolvulaceae, and assess their taxonomic implications. Micromorphological examinations were conducted using clearing techniques on 73 taxa from seven out of eight genera within the tribe, and the data were analyzed using factor analysis of mixed data (FAMD). The results show that, among all examined taxa, only two species lacked staminal trichomes. Glandular staminal trichomes were the most common type observed, and they were the only type observed in Ipomoea, Paralepistemon, Rivea, Stictocardia, and most Argyreia species. Nonglandular staminal trichomes were restricted to Astripomoea, Lepistemon, and some Argyreia taxa. The glandular trichomes in Ipomoea exhibited the largest variation and overlapped with other glandular trichome-bearing genera. However, genera with nonglandular trichomes were readily distinguishable from each other. Both glandular and nonglandular trichomes were basically composed of a stalk and apical cell, yet they varied in shape, size, density, and distribution pattern. This study provides a detailed examination and application of microscale features, emphasizing the significance of micromorphology in plant taxonomy. Full article
(This article belongs to the Section Plant Systematics, Taxonomy, Nomenclature and Classification)
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26 pages, 4665 KB  
Article
A Preliminary Study on Factors That Drive Patient Variability in Human Subcutaneous Adipose Tissues
by Megan K. DeBari, Elizabeth K. Johnston, Jacqueline V. Scott, Erica Ilzuka, Wenhuan Sun, Victoria A. Webster-Wood and Rosalyn D. Abbott
Cells 2024, 13(15), 1240; https://doi.org/10.3390/cells13151240 - 24 Jul 2024
Cited by 1 | Viewed by 2573
Abstract
Adipose tissue is a dynamic regulatory organ that has profound effects on the overall health of patients. Unfortunately, inconsistencies in human adipose tissues are extensive and multifactorial, including large variability in cellular sizes, lipid content, inflammation, extracellular matrix components, mechanics, and cytokines secreted. [...] Read more.
Adipose tissue is a dynamic regulatory organ that has profound effects on the overall health of patients. Unfortunately, inconsistencies in human adipose tissues are extensive and multifactorial, including large variability in cellular sizes, lipid content, inflammation, extracellular matrix components, mechanics, and cytokines secreted. Given the high human variability, and since much of what is known about adipose tissue is from animal models, we sought to establish correlations and patterns between biological, mechanical, and epidemiological properties of human adipose tissues. To do this, twenty-six independent variables were cataloged for twenty patients, which included patient demographics and factors that drive health, obesity, and fibrosis. A factorial analysis for mixed data (FAMD) was used to analyze patterns in the dataset (with BMI > 25), and a correlation matrix was used to identify interactions between quantitative variables. Vascular endothelial growth factor A (VEGFA) and actin alpha 2, smooth muscle (ACTA2) gene expression were the highest loadings in the first two dimensions of the FAMD. The number of adipocytes was also a key driver of patient-related differences, where a decrease in the density of adipocytes was associated with aging. Aging was also correlated with a decrease in overall lipid percentage of subcutaneous tissue, with lipid deposition being favored extracellularly, an increase in transforming growth factor-β1 (TGFβ1), and an increase in M1 macrophage polarization. An important finding was that self-identified race contributed to variance between patients in this study, where Black patients had significantly lower gene expression levels of TGFβ1 and ACTA2. This finding supports the urgent need to account for patient ancestry in biomedical research to develop better therapeutic strategies for all patients. Another important finding was that TGFβ induced factor homeobox 1 (TGIF1), an understudied signaling molecule, which is highly correlated with leptin signaling, was correlated with metabolic inflammation. Furthermore, this study draws attention to what we define as “extracellular lipid droplets”, which were consistently found in collagen-rich regions of the obese adipose tissues evaluated here. Reduced levels of TGIF1 were correlated with higher numbers of extracellular lipid droplets and an inability to suppress fibrotic changes in adipose tissue. Finally, this study indicated that M1 and M2 macrophage markers were correlated with each other and leptin in patients with a BMI > 25. This finding supports growing evidence that macrophage polarization in obesity involves a complex, interconnecting network system rather than a full switch in activation patterns from M2 to M1 with increasing body mass. Overall, this study reinforces key findings in animal studies and identifies important areas for future research, where human and animal studies are divergent. Understanding key drivers of human patient variability is required to unravel the complex metabolic health of unique patients. Full article
(This article belongs to the Special Issue Fibrosis in Chronic Inflammatory Diseases)
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20 pages, 5727 KB  
Article
Spectral Features Differentiate Aging-Induced Changes in Parchment—A Combined Approach of UV/VIS, µ-ATR/FTIR and µ-Raman Spectroscopy with Multivariate Data Analysis
by Antonia Malissa, Federica Cappa, Manfred Schreiner and Martina Marchetti-Deschmann
Molecules 2023, 28(12), 4584; https://doi.org/10.3390/molecules28124584 - 6 Jun 2023
Cited by 8 | Viewed by 2939
Abstract
From the moment of production, artworks are constantly exposed to changing environmental factors potentially inducing degradation. Therefore, detailed knowledge of natural degradation phenomena is essential for proper damage assessment and preservation. With special focus on written cultural heritage, we present a study on [...] Read more.
From the moment of production, artworks are constantly exposed to changing environmental factors potentially inducing degradation. Therefore, detailed knowledge of natural degradation phenomena is essential for proper damage assessment and preservation. With special focus on written cultural heritage, we present a study on the degradation of sheep parchment employing accelerated aging with light (295–3000 nm) for one month, 30/50/80% relative humidity (RH) and 50 ppm sulfur dioxide with 30/50/80%RH for one week. UV/VIS spectroscopy detected changes in the sample surface appearance, showing browning after light-aging and increased brightness after SO2-aging. Band deconvolution of ATR/FTIR and Raman spectra and factor analysis of mixed data (FAMD) revealed characteristic changes of the main parchment components. Spectral features for degradation-induced structural changes of collagen and lipids turned out to be different for the employed aging parameters. All aging conditions induced denaturation (of different degrees) indicated by changes in the secondary structure of collagen. Light treatment resulted in the most pronounced changes for collagen fibrils in addition to backbone cleavage and side chain oxidations. Additional increased disorder for lipids was observed. Despite shorter exposure times, SO2-aging led to a weakening of protein structures induced by transitions of stabilizing disulfide bonds and side chain oxidations. Full article
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26 pages, 7183 KB  
Article
Influence of Tree, Stand, and Site Attributes on Hardwood Product Yield: Insights into the Acadian Forests
by Caroline Bennemann, Eric R. Labelle and Jean-Martin Lussier
Forests 2023, 14(2), 182; https://doi.org/10.3390/f14020182 - 18 Jan 2023
Cited by 3 | Viewed by 2739
Abstract
Acadian forests of New Brunswick, Canada, are highly variable both in terms of species composition and quality. This is particularly accurate for hardwoods, for which value recovery is closely influenced by wood quality and a proper understanding of tree attributes. Therefore, based on [...] Read more.
Acadian forests of New Brunswick, Canada, are highly variable both in terms of species composition and quality. This is particularly accurate for hardwoods, for which value recovery is closely influenced by wood quality and a proper understanding of tree attributes. Therefore, based on several databases created between 2012 and 2021, the objectives of this study were to (1) characterize the stand-level distribution of species, size, form, and risk according to site factors and (2) determine the influence of different tree, stand, and site factors on the recovery of merchantable, sawlog, and veneer volumes. In total, 287,984 trees stemming from 9233 plots were analyzed for objective 1. For a subset of trees (743), tree, stand, and site attributes were also related to the product output of harvesting operations through a comprehensive inventory of standing trees and their associated products. Analyses were performed with linear and multinomial logistic regressions as well as factor analysis of mixed data (FAMD). Key results indicated that tree attributes and product recovery were significantly influenced by (1) environmental factors (soil, temperature, and precipitation), summarized by ecoregion in this study and (2) tree size and form. These findings suggest that the inclusion of site factors in supply planning could improve product recovery during forest operations. Full article
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12 pages, 1630 KB  
Article
Genotoxicity and Reproductive Risk in Workers Exposed to Pesticides in Rural Areas of Curicó, Chile: A Pilot Study
by Natalia Landeros, Soledad Duk, Carolina Márquez, Bárbara Inzunza, Ian S. Acuña-Rodríguez and Liliana A. Zúñiga-Venegas
Int. J. Environ. Res. Public Health 2022, 19(24), 16608; https://doi.org/10.3390/ijerph192416608 - 10 Dec 2022
Cited by 5 | Viewed by 2645
Abstract
Significant risks to human health have been associated with chronic exposure to low doses of pesticides, a situation which may be frequent among agricultural workers. In this context, and regarding the agricultural-based economy of central Chile, we aimed to explore the genotoxic damage [...] Read more.
Significant risks to human health have been associated with chronic exposure to low doses of pesticides, a situation which may be frequent among agricultural workers. In this context, and regarding the agricultural-based economy of central Chile, we aimed to explore the genotoxic damage in agricultural workers and reproductive risk among women in rural and urban areas of Curicó, a traditional agricultural district in Chile. Hence, we sampled a group of rural agricultural workers associated with pesticide management (n = 30) and an urban unexposed group (n = 30). Our results showed that the agricultural workers had higher micronuclei frequencies (MN: β = 13.27; 95% CI low = 11.08, CI high = 15.47) and women had a 40-fold higher risk of reproductive problems (OR = 40.32; 95% CI low = 2.60, CI high = 624.31) than the unexposed group. The factor analysis of mixed data (FAMD) showed that neither the sex nor smoking habits appear to define the ordination of the data. Nevertheless, the exposure level did segregate them in the multidimensional space (explained variance: 35.38% dim-1; 18.63% dim-2). This pilot study highlights the higher risks of biological conditions negatively associated with the health of agricultural workers. Full article
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22 pages, 5353 KB  
Article
A Morphometric and Karyological Study of the Anthemis macedonica Group (Asteraceae, Anthemideae) Reveals a New Species from Greece
by Katerina Goula, Konstantinos Touloumis, Panayotis Dimopoulos and Theophanis Constantinidis
Plants 2022, 11(21), 3006; https://doi.org/10.3390/plants11213006 - 7 Nov 2022
Cited by 2 | Viewed by 2955
Abstract
A recent study of the Anthemis collections in the Balkans indicated that the taxa of the Anthemis macedonica group (A. macedonica subsp. macedonica, A. macedonica subsp. thracica, A. meteorica, A. orbelica) exhibit noteworthy morphological patterns not evaluated before. [...] Read more.
A recent study of the Anthemis collections in the Balkans indicated that the taxa of the Anthemis macedonica group (A. macedonica subsp. macedonica, A. macedonica subsp. thracica, A. meteorica, A. orbelica) exhibit noteworthy morphological patterns not evaluated before. We applied morphometric approaches (principal components analysis, PCA; factor analysis on mixed data, FAMD) by considering 19 qualitative and 20 quantitative morphological characters, together with three ratios, in 26 populations of this group. Furthermore, the chromosome numbers and karyotype morphology were investigated in eight populations of the group, covering the taxa participating in the study. Our results revealed that the southernmost populations of the group represent a hitherto unknown species confined to serpentine: it is described here as Anthemis serpentinica Goula & Constantinidis. The morphological evidence supports the proximity of A. macedonica and A. orbelica, which would be better considered as subspecific entities of the same species. On the contrary, A. meteorica and A. thracica are retained as independent entities at species level. All taxa share the same diploid chromosome number of 2n = 2x = 18 with similar but not identical karyotypes. A brief description of all taxa, based on recent new collections, and a dichotomous key are presented. Lectotypes are designated for Anthemis macedonica and A. meteorica. Full article
(This article belongs to the Special Issue Taxonomy and Plant Conservation, Volume II)
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21 pages, 3610 KB  
Article
Benthic Fauna Assessment along the Navigation Channel from the Mouth of the Casamance Estuary to Ziguinchor City
by Mbaye Tine, Penda Diop and Hamet Diaw Diadhiou
Conservation 2022, 2(2), 367-387; https://doi.org/10.3390/conservation2020025 - 13 Jun 2022
Cited by 4 | Viewed by 3132
Abstract
This study aimed at studying the benthic fauna of the Casamance estuary (Senegal) through the analysis of its composition at 13 stations located along the channel from the estuary mouth to Ziguinchor port (estuary upstream), which may provide indications of the potential environmental [...] Read more.
This study aimed at studying the benthic fauna of the Casamance estuary (Senegal) through the analysis of its composition at 13 stations located along the channel from the estuary mouth to Ziguinchor port (estuary upstream), which may provide indications of the potential environmental impact of the navigation channel dredged on the estuary. Sixty taxa distributed in twelve phyla were identified, of which the most abundant were bivalve mollusks, annelids, and nematodes. The species abundance and species richness varied from five (estuary mouth) to thirty species (upstream). Correspondence factorial analysis (CFA) and factor analysis for mixed data (FAMD) showed, respectively, that 34% (Dim 1 = 15.6% and Dim 2 = 18.4%) and 35.5% (Dim 1 = 20.8% and Dim 2 = 14.7%) of total inertia was explained by the first two axes and a significant correlation between the dominant species distribution, sediment type, and depth of the sampled station. Overall, Spearman’s rank correlation indicated a significant negative correlation of the species abundance and species richness with distance from the estuary mouth. From these results, it appears that sediment type, depth of the sampled stations, salinity, and the mangrove forests are key factors that influence the distribution and abundance of benthic fauna in the Casamance estuary. The monitoring plans for the preservation of the health and biological diversity of this ecosystem, especially benthic fauna biodiversity, should take into consideration the seasonal variations of rainfalls and related changes in terms of physicochemical factors. This should include evaluating the long-term responses of benthic organisms to dredging activities, boat traffic, and especially physical habitat modifications, changes in migration ways, and pollution pressure. Full article
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14 pages, 2010 KB  
Article
Seasonal Paspalum vaginatum Physiological Characteristics Change with Agricultural Byproduct Biochar in Sandy Potting Soil
by Dounia Fetjah, Zaina Idardare, Bouchaib Ihssane, Lalla Fatima Zohra Ainlhout and Laila Bouqbis
Biology 2022, 11(4), 560; https://doi.org/10.3390/biology11040560 - 7 Apr 2022
Cited by 2 | Viewed by 2605
Abstract
A plastic pot open-air trial was conducted with the Paspalum vaginatum (seashore paspalum) using different rates of biochar or compost addition to sandy loam soil and two water treatments (60% and 20% of the water-holding capacity of the control) during three seasons (winter, [...] Read more.
A plastic pot open-air trial was conducted with the Paspalum vaginatum (seashore paspalum) using different rates of biochar or compost addition to sandy loam soil and two water treatments (60% and 20% of the water-holding capacity of the control) during three seasons (winter, spring, and summer). Paspalum growth, physiological characteristics, and physicochemical properties of soil were investigated. The effect of biochar on soil properties was assessed using factor analysis of mixed data (FAMD). Additionally, multiple factorial designs (MFA) were used to examine the impact of three biochars on physiological functions. Peanut hull biochar application increased soil fertility and chlorophyll concentration of paspalum leaves significantly compared to the other biochars. Physiological characteristics were significantly improved with peanut hull biochar under summer compared to winter and spring due to the accumulation of nutrients in the soil by the decomposition of biochar. The application rate of the three biochars reduced the water requirements of paspalum. The best result was obtained by incorporating 6% peanut hull biochar into the soil, which resulted in better soil quality and healthy grass in dryland conditions while using 47.5% less water. These findings can be suitable for golf managers and can serve as a solution for dry zones. Full article
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19 pages, 3301 KB  
Article
Predictive Factors for Neutralizing Antibody Levels Nine Months after Full Vaccination with BNT162b2: Results of a Machine Learning Analysis
by Dimitris Papadopoulos, Ioannis Ntanasis-Stathopoulos, Maria Gavriatopoulou, Zoi Evangelakou, Panagiotis Malandrakis, Maria S. Manola, Despoina D. Gianniou, Efstathios Kastritis, Ioannis P. Trougakos, Meletios A. Dimopoulos, Vangelis Karalis and Evangelos Terpos
Biomedicines 2022, 10(2), 204; https://doi.org/10.3390/biomedicines10020204 - 18 Jan 2022
Cited by 7 | Viewed by 3011
Abstract
Vaccination against SARS-CoV-2 with BNT162b2 mRNA vaccine plays a critical role in COVID-19 prevention. Although BNT162b2 is highly effective against COVID-19, a time-dependent decrease in neutralizing antibodies (NAbs) is observed. The aim of this study was to identify the individual features that may [...] Read more.
Vaccination against SARS-CoV-2 with BNT162b2 mRNA vaccine plays a critical role in COVID-19 prevention. Although BNT162b2 is highly effective against COVID-19, a time-dependent decrease in neutralizing antibodies (NAbs) is observed. The aim of this study was to identify the individual features that may predict NAbs levels after vaccination. Machine learning techniques were applied to data from 302 subjects. Principal component analysis (PCA), factor analysis of mixed data (FAMD), k-means clustering, and random forest were used. PCA and FAMD showed that younger subjects had higher levels of neutralizing antibodies than older subjects. The effect of age is strongest near the vaccination date and appears to decrease with time. Obesity was associated with lower antibody response. Gender had no effect on NAbs at nine months, but there was a modest association at earlier time points. Participants with autoimmune disease had lower inhibitory levels than participants without autoimmune disease. K-Means clustering showed the natural grouping of subjects into five categories in which the characteristics of some individuals predominated. Random forest allowed the characteristics to be ordered by importance. Older age, higher body mass index, and the presence of autoimmune diseases had negative effects on the development of NAbs against SARS-CoV-2, nine months after full vaccination. Full article
(This article belongs to the Special Issue Artificial Intelligence in Biological and Biomedical Imaging)
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