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Keywords = fasciated ear

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18 pages, 6678 KB  
Article
Integrating BSA-Seq with RNA-Seq Reveals a Novel Fasciated Ear5 Mutant in Maize
by Pengshuai Yan, Weihua Li, Enxiang Zhou, Ye Xing, Bing Li, Jing Liu, Zhanhui Zhang, Dong Ding, Zhiyuan Fu, Huiling Xie and Jihua Tang
Int. J. Mol. Sci. 2023, 24(2), 1182; https://doi.org/10.3390/ijms24021182 - 7 Jan 2023
Cited by 13 | Viewed by 4113
Abstract
Increasing grain yield is required to meet the rapidly expanding demands for food, feed, and fuel. Inflorescence meristems are central to plant growth and development. However, the question concerning whether inflorescence development can be regulated to improve grain yield remains unclear. Here, we [...] Read more.
Increasing grain yield is required to meet the rapidly expanding demands for food, feed, and fuel. Inflorescence meristems are central to plant growth and development. However, the question concerning whether inflorescence development can be regulated to improve grain yield remains unclear. Here, we describe a naturally occurring single recessive mutation called fea5 that can increase grain yield in maize. Using bulk segregant analysis sequencing (BSA-seq), the candidate region was initially mapped to a large region on chromosome 4 (4.68 Mb–11.26 Mb). Transcriptome sequencing (RNA-seq) revealed a total of 1246 differentially expressed genes (DEGs), of which 835 were up-regulated and 411 were down-regulated. Further analysis revealed the enrichment of DEGs in phytohormone signal transduction. Consistently, phytohormone profiling indicated that auxin (IAA), jasmonic acid (JA), ethylene (ETH), and cytokinin (CK) levels increased significantly, whereas the gibberellin (GA) level decreased significantly in fea5. By integrating BSA-seq with RNA-seq, we identified Zm00001d048841 as the most likely candidate gene. Our results provide valuable insight into this new germplasm resource and the molecular mechanism underlying fasciated ears that produce a higher kernel row number in maize. Full article
(This article belongs to the Special Issue Molecular Research in Maize)
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17 pages, 3200 KB  
Article
A Weak Allele of FASCIATED EAR 2 (FEA2) Increases Maize Kernel Row Number (KRN) and Yield in Elite Maize Hybrids
by Khuat Huu Trung, Quan Hong Tran, Ngoc Hong Bui, Thuy Thi Tran, Kong Quy Luu, Nga Thi Thu Tran, Loan Thi Nguyen, Diep Thi Ngoc Nguyen, Bach Duong Vu, Duong Thi Thuy Quan, Diep Thuy Nguyen, Hien Thi Nguyen, Cuong Cao Dang, Bao Manh Tran, Tran Dang Khanh and Son Lang Vi
Agronomy 2020, 10(11), 1774; https://doi.org/10.3390/agronomy10111774 - 13 Nov 2020
Cited by 13 | Viewed by 5773
Abstract
Meristems are central to plant growth and development, yet evidence of directly manipulating this control to improve crop yield is scarce. Kernel row number (KRN) is an important agronomic trait that can directly affect maize (Zea mays L.) yield. However, this [...] Read more.
Meristems are central to plant growth and development, yet evidence of directly manipulating this control to improve crop yield is scarce. Kernel row number (KRN) is an important agronomic trait that can directly affect maize (Zea mays L.) yield. However, this trait is difficult to select by phenotyping, since it is highly variable in the mixed genetic backgrounds in early selfing generations. This study sought to improve this trait by marker-assisted backcrossing (MABC) of a weak allele of FASCIATED EAR 2 that is known to affect inflorescence meristem size, but the effect of which on yield is unclear. All of the four introgressed tropical elite inbreds of different heterotic groups, which are homozygous for the fea2-1328 allele, had 2–5 more KRNs compared to their respective recurrent parents. Furthermore, one hybrid made from crosses between two introgressed parents also had KRN increases that resulted in up to 28% yield increase compared to the original hybrid across multiple yield trials. The novel negative effects of the pericentromeric fea2 and/or its linkage drag effect on plant height, seed weight, and ear length, which could prevent line improvement, were revealed in several genetic backgrounds. Integration of conventional phenotypic selection to overcome these undesirable effects was discussed. This is the first work to demonstrate the possibility to increase yield of maize varieties using a mutation in a meristem size regulator. The crossing, selection strategies, and recombinant lines in this work can be applied to other elite maize hybrids and provide a potentially straightforward, non-transgenic way to improve the yield of an existing variety by 8–28%. Full article
(This article belongs to the Section Crop Breeding and Genetics)
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14 pages, 39849 KB  
Article
Mapping-by-Sequencing via MutMap Identifies a Mutation in ZmCLE7 Underlying Fasciation in a Newly Developed EMS Mutant Population in an Elite Tropical Maize Inbred
by Quan Hong Tran, Ngoc Hong Bui, Christian Kappel, Nga Thi Ngoc Dau, Loan Thi Nguyen, Thuy Thi Tran, Tran Dang Khanh, Khuat Huu Trung, Michael Lenhard and Son Lang Vi
Genes 2020, 11(3), 281; https://doi.org/10.3390/genes11030281 - 6 Mar 2020
Cited by 37 | Viewed by 9507
Abstract
Induced point mutations are important genetic resources for their ability to create hypo- and hypermorphic alleles that are useful for understanding gene functions and breeding. However, such mutant populations have only been developed for a few temperate maize varieties, mainly B73 and W22, [...] Read more.
Induced point mutations are important genetic resources for their ability to create hypo- and hypermorphic alleles that are useful for understanding gene functions and breeding. However, such mutant populations have only been developed for a few temperate maize varieties, mainly B73 and W22, yet no tropical maize inbred lines have been mutagenized and made available to the public to date. We developed a novel Ethyl Methanesulfonate (EMS) induced mutation resource in maize comprising 2050 independent M2 mutant families in the elite tropical maize inbred ML10. By phenotypic screening, we showed that this population is of comparable quality with other mutagenized populations in maize. To illustrate the usefulness of this population for gene discovery, we performed rapid mapping-by-sequencing to clone a fasciated-ear mutant and identify a causal promoter deletion in ZmCLE7 (CLE7). Our mapping procedure does not require crossing to an unrelated parent, thus is suitable for mapping subtle traits and ones affected by heterosis. This first EMS population in tropical maize is expected to be very useful for the maize research community. Also, the EMS mutagenesis and rapid mapping-by-sequencing pipeline described here illustrate the power of performing forward genetics in diverse maize germplasms of choice, which can lead to novel gene discovery due to divergent genetic backgrounds. Full article
(This article belongs to the Special Issue Recent Advances in Genetics and Breeding of Major Staple Food Crops)
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