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19 pages, 47146 KB  
Article
Functional Conservation and Redundancy of Duplicated AGAMOUS Homologs in Regulating Floral Organ Development of Tagetes erecta
by Chunling Zhang, Chujun Huang, Ke Zhu, Hang Li, Shiyu Xu, Zhengguo Tao and Yanhong He
Agronomy 2025, 15(10), 2379; https://doi.org/10.3390/agronomy15102379 (registering DOI) - 12 Oct 2025
Abstract
Asteraceae, as the largest angiosperm family, has an architecturally complex capitulum (inflorescences) composed of heteromorphic florets with distinct morphologies and functions. AGAMOUS (AG) MADS-box transcription factors act as key regulators in flower development and are essential for the formation of the characteristic capitulum [...] Read more.
Asteraceae, as the largest angiosperm family, has an architecturally complex capitulum (inflorescences) composed of heteromorphic florets with distinct morphologies and functions. AGAMOUS (AG) MADS-box transcription factors act as key regulators in flower development and are essential for the formation of the characteristic capitulum and florets. To explore the potential functions of the AG genes in Asteraceae, we conducted a genome-wide identification and analysis of 52 AG-like genes across 22 species within this family. Additionally, we studied the functions of the Tagetes erecta class C genes TeAG1 and TeAG2 by introducing these genes into T. erecta and Nicotiana tabacum. Gene structure and phylogenomic analyses indicated that AG-like genes may have conserved and specific biological functions in Asteraceae plants. Phenotypic analyses revealed that the T. erecta class C genes TeAG1 and TeAG2 played a conserved and redundant role in regulating stamen and carpel development. The simultaneous downregulation of TeAG1 and TeAG2 led to the homeotic transformation of both stamens and carpels into corolla-like structures. However, silencing TeAG1 or TeAG2 individually in T. erecta did not affect any floral organ development. Furthermore, the ectopic expression of TeAG1 and TeAG2 in N. tabacum resulted in the transformation of sepals into pistils and corollas into stamens, respectively. Additionally, qRT-PCR analyses revealed that TeAG1 and TeAG2 repressed the expression of class A genes. Our findings expand our understanding of the function of class C genes within Asteraceae and provide strategies for breeding double-flower cultivars. Full article
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18 pages, 1576 KB  
Article
Dynamics of Bioactive Compounds and Their Relationship with Antioxidant and Antimicrobial Activity in the Pulp, Peel, and Seeds of ‘Salak’ During Ripening
by Elena Coyago-Cruz, Gabriela Méndez, Johana Zúñiga-Miranda, Nubia Jami, Ramiro Acurio-Vásconez and Jorge Heredia-Moya
Foods 2025, 14(20), 3476; https://doi.org/10.3390/foods14203476 (registering DOI) - 12 Oct 2025
Abstract
Fruit is an important source of bioactive compounds, and making full use of them can contribute to the development of natural alternatives to microbial resistance. This study aimed to evaluate the dynamics of bioactive compounds and their relationship with antioxidant and antimicrobial activity [...] Read more.
Fruit is an important source of bioactive compounds, and making full use of them can contribute to the development of natural alternatives to microbial resistance. This study aimed to evaluate the dynamics of bioactive compounds and their relationship with antioxidant and antimicrobial activity in the pulp, peel, and seeds of Salacca zalacca at three stages of ripeness (M1, 30 days after flowering; M2, 90 days after flowering; and M3, 120 days after flowering). The physicochemical characteristics (weight, size, pH, soluble solids, titratable acidity, moisture, ash, and minerals) and the bioactive compounds (vitamin C, organic acids, carotenoids, chlorophylls, and phenolic compounds) were determined using liquid chromatography. Antioxidant activity was determined using the ABTS and DPPH methods, and antimicrobial activity was assessed against Escherichia coli, Staphylococcus aureus, Pseudomonas aeruginosa, Streptococcus mutans, Candida albicans and Candida tropicalis. The results showed that the pulp had the highest concentrations of malic acid (8018.6 mg/100 g DW in M1); the peel in M1 had the highest concentrations of chlorogenic (705.0 mg/100 g DW), caffeic (321.0 mg/100 g DW) and ferulic acids (173.5 mg/100 g DW); and the seeds had the highest levels of vitamin C (16.81 mg/100 g DW in M2). The pulp in M2 and M3 and the peel in M2 exhibited the highest antioxidant capacity (5.5 mmol ET/100 g DW by DPPH), as well as the most potent antimicrobial activity against S. aureus and E. coli. In conclusion, the peel, in addition to the edible pulp, represents a relevant source of bioactive compounds with potential applications in functional foods and natural products. Full article
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19 pages, 13272 KB  
Article
The MADS-Box Transcription Factor BoAGL8 Is Involved in Regulating Flowering in Broccoli
by Yuanyuan Li, Hanbing Yang, Peini Jia, Zairong Li, Yan Wang, Yajie Jiang, Xia He, Boyue Wen, Chensi Huo, Wei Zhang, Wenchen Chai, Shijiang Yan and Jing Zhang
Horticulturae 2025, 11(10), 1227; https://doi.org/10.3390/horticulturae11101227 (registering DOI) - 11 Oct 2025
Abstract
Broccoli (Brassica oleracea L. var. italica) is a biennial or annual herbaceous plant belonging to the species Brassica oleracea in the genus Brassica of the Cruciferae family. The green flower curd serves as the primary edible organ, with its development and [...] Read more.
Broccoli (Brassica oleracea L. var. italica) is a biennial or annual herbaceous plant belonging to the species Brassica oleracea in the genus Brassica of the Cruciferae family. The green flower curd serves as the primary edible organ, with its development and preservation critically determining broccoli yield and quality. Given that these processes are regulated by flowering time, understanding the mechanisms underlying floral transition is essential for enhancing broccoli yield and quality. This study aimed to identify the MADS-box family in broccoli and to investigate the function of the BoAGL8 gene in floral induction. We identified a total of 176 MADS-box genes, of which 54 genes were up-regulated and 50 genes were down-regulated under low-temperature treatment. Notably, the expression of BoAGL8 was up-regulated by 6.70-fold under low-temperature induction, prompting us to select and clone this gene for further analysis. Tissue-specific expression profiling further revealed that BoAGL8 is expressed at relatively high level in both mature and young leaves. After 15 days of low-temperature treatment, BoAGL8 expression in shoot tip was significantly upregulated compared to untreated controls. Subcellular localization analysis showed that BoAGL8 protein was located to the nucleus. Ectopic over-expression of BoAGL8 in Arabidopsis exhibited accelerated bolting and flowering, reduced rosette leaf number, and increased seed yield per plant compared to wild-type plants. Furthermore, compared to wild-type controls, transgenic lines exhibited upregulated expression of AtFT, AtAP1 and AtSEP3, alongside downregulation of SVP expression. The above results indicate that BoAGL8 may play a key regulatory role in the process of floral organ development in broccoli, providing an important theoretical basis for future research on flowering time regulation and breeding in broccoli. Full article
(This article belongs to the Topic Genetic Breeding and Biotechnology of Garden Plants)
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18 pages, 7772 KB  
Article
High Red–Blue Light Ratio Promotes Accelerated In Vitro Flowering and Seed-Set Development in Amaranthus hypochondriacus Under a Long-Day Photoperiod
by Alex R. Bermudez-Valle, Norma A. Martínez-Gallardo, Eliana Valencia-Lozano and John P. Délano-Frier
Plants 2025, 14(20), 3134; https://doi.org/10.3390/plants14203134 (registering DOI) - 11 Oct 2025
Abstract
Grain amaranths are recalcitrant to conventional in vitro plant regeneration by organogenesis de novo or through somatic embryogenesis. Consequently, floral organogenesis by these methods, representing the culminating developmental point in angiosperms, is rarely achieved. In the present study, the manipulation of in vitro [...] Read more.
Grain amaranths are recalcitrant to conventional in vitro plant regeneration by organogenesis de novo or through somatic embryogenesis. Consequently, floral organogenesis by these methods, representing the culminating developmental point in angiosperms, is rarely achieved. In the present study, the manipulation of in vitro flowering was explored as part of a strategy designed to overcome grain amaranth’s regeneration recalcitrance. It led to an efficient and reproducible in vitro protocol in which half-longitudinally dissected zygotic embryos generated fully developed Amaranthus hypochondriacus (Ah) plants. The use of high-irradiance illumination with LED lamps with a 3:1 red–blue irradiance ratio was a critical factor, leading to a 70% rate of early flowering events under flowering-inhibiting long-day photoperiod conditions. Contrariwise, no flowering was induced under LED white lights. All in vitro flowering Ah plants yielded viable seeds. To understand the basic molecular mechanisms of the phenomenon observed, gene expression patterns and principal component analysis of key flowering-related genes were analyzed after cultivation in vitro for 4, 8, and 12 weeks under both lighting regimes. These coded for photoreceptors, photomorphogenetic regulators, embryogenic modulators, and flowering activators/repressors. The results highlighted the upregulation of key flowering-regulatory genes, including CONSTANS, FLOWERING LOCUS T, and LEAFY, together with the downregulation of the floral repressor TERMINAL FLOWER1. Ribosome biogenesis- and seed-development-related genes were also differentially expressed, supporting a key role in this process for protein synthesis and embryogenesis. A model is proposed to explain how this light-regulated molecular framework enables in vitro flowering and seed production in Ah plants kept under long-day photoperiods. Full article
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21 pages, 3347 KB  
Article
Dynamic Metabolome and Transcriptome Profiling Provide Molecular Insights into Floral Bud Differentiation in Michelia ‘Xin’
by Yan Chen, Dapeng Li, Xiaoling Ji, Caixian Liu and Chenfei Huang
Biology 2025, 14(10), 1383; https://doi.org/10.3390/biology14101383 - 10 Oct 2025
Abstract
Michelia ‘Xin’ is an evergreen rare ornamental tree species that undergoes FBD only once but blooms twice a year. However, the molecular mechanisms controlling its FBD process remain largely unknown. This study characterized the FBD process and delved into the key molecular regulatory [...] Read more.
Michelia ‘Xin’ is an evergreen rare ornamental tree species that undergoes FBD only once but blooms twice a year. However, the molecular mechanisms controlling its FBD process remain largely unknown. This study characterized the FBD process and delved into the key molecular regulatory mechanisms through transcriptomic and metabolomic analyses of developing flower buds. FBD in Michelia ‘Xin’ was characterized into five stages, including vegetative (T1), floral meristem transition (T2), tepal primordia differentiation (T3), stamen primordia differentiation (T4), and pistil primordia differentiation (T5). Analyses revealed a stage-specific metabolic and transcriptional regulation of FBD, with increasing numbers of differential metabolites and a decreasing number of DEGs from T1 to T5. Most phytohormone and transcription factor-related DEGs were highly induced from T2. The down-regulation of dormancy-associated protein homologs and CONSTANS-LIKE proteins associated with significant induction of flowering-promoting factor, CLAVATA3, trichome birefringence-like, and GRAVITROPIC IN THE LIGHT proteins was essential for the induction and reproductive organs’ development. Porphyrin biosynthesis, chlorophyll a-b binding proteins, DNA replication, flavonoid biosynthesis, and starch and sucrose metabolism were also significantly induced from T2. Key pivotal candidate genes were screened out. Our results provide fundamental resources for dissecting the molecular network regulating FBD and molecular-assisted flowering control in Michelia ‘Xin’. Full article
(This article belongs to the Special Issue The Potential of Genetics and Plant Breeding in Crop Improvement)
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38 pages, 5294 KB  
Article
A Discrete Schwarzian Derivative via Circle Packing
by Kenneth Stephenson
Geometry 2025, 2(4), 16; https://doi.org/10.3390/geometry2040016 - 9 Oct 2025
Viewed by 129
Abstract
There exists an extensive and fairly comprehensive discrete analytic function theory which is based on circle packing. This paper introduces a faithful discrete analogue of the classical Schwarzian derivative to this theory and develops its basic properties. The motivation comes from the current [...] Read more.
There exists an extensive and fairly comprehensive discrete analytic function theory which is based on circle packing. This paper introduces a faithful discrete analogue of the classical Schwarzian derivative to this theory and develops its basic properties. The motivation comes from the current lack of circle packing algorithms in spherical geometry, and the discrete Schwarzian derivative may provide for new approaches. A companion localized notion called an intrinsic schwarzian is also investigated. The main concrete results of the paper are limited to circle packing flowers. A parameterization by intrinsic schwarzians is established, providing an essential packing criterion for flowers. The paper closes with the study of special classes of flowers that occur in the circle packing literature. As usual in circle packing, there are pleasant surprises at nearly every turn, so those not interested in circle packing theory may still enjoy the new and elementary geometry seen in these flowers. Full article
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23 pages, 4283 KB  
Article
Synergistic Regulation of δ-MnO2 Cathode via Crystal Engineering and pH Buffering for Long-Cycle Aqueous Zinc-Ion Batteries
by Fan Zhang, Haotian Yu, Qiongyue Zhang, Yahao Wang, Haodong Ren, Huirong Liang, Jinrui Li, Yuanyuan Feng, Bin Zhao and Xiaogang Han
Materials 2025, 18(19), 4632; https://doi.org/10.3390/ma18194632 - 8 Oct 2025
Viewed by 321
Abstract
Aqueous zinc-ion batteries (ZIBs) have emerged as a promising candidate for large-scale energy storage due to their inherent safety, low cost, and environmental friendliness. However, manganese dioxide (MnO2)-based cathodes, which are widely studied for ZIBs owing to their high theoretical capacity [...] Read more.
Aqueous zinc-ion batteries (ZIBs) have emerged as a promising candidate for large-scale energy storage due to their inherent safety, low cost, and environmental friendliness. However, manganese dioxide (MnO2)-based cathodes, which are widely studied for ZIBs owing to their high theoretical capacity and low cost, face severe capacity fading issues that hinder the commercialization of ZIBs. This performance degradation mainly stems from the weak van der Waals forces between MnO2 layers leading to structural collapse during repeated Zn2+ insertion and extraction; it is also exacerbated by irreversible Mn dissolution via Mn3+ disproportionation that depletes active materials, and further aggravated by dynamic electrolyte pH fluctuations promoting insulating zinc hydroxide sulfate (ZHS) formation to block ion diffusion channels. To address these interconnected challenges, in this study, a synergistic strategy was developed combining crystal engineering and pH buffer regulation. We synthesized three MnO2 polymorphs (α-, δ-, γ-MnO2), identified δ-MnO2 with flower-like microspheres as optimal, and introduced sodium dihydrogen phosphate (NaH2PO4) as a pH buffer (stabilizing pH at 2.8 ± 0.2). The modified electrolyte improved δ-MnO2 wettability (contact angle of 17.8° in NaH2PO4-modified electrolyte vs. 26.1° in base electrolyte) and reduced charge transfer resistance (Rct = 78.17 Ω), enabling the optimized cathode to retain 117.25 mAh g−1 (82.16% retention) after 2500 cycles at 1 A g−1. This work provides an effective strategy for stable MnO2-based ZIBs, promoting their application in renewable energy storage. Full article
(This article belongs to the Section Energy Materials)
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15 pages, 3339 KB  
Article
Genome-Wide Identification and Expression Analysis of the SPL Gene Family in Phalaenopsis equestris
by Xule Zhang, Lei Feng, Qingdi Hu, Yaping Hu, Xiaohua Ma and Jian Zheng
Plants 2025, 14(19), 3090; https://doi.org/10.3390/plants14193090 - 7 Oct 2025
Viewed by 277
Abstract
The SQUAMOSA promoter-binding protein-like (SPL/SBP) family plays crucial roles in multiple developmental processes. Phalaenopsis equestris is a key ornamental and breeding species known for producing abundant colorful flowers on a single inflorescence. The SPL gene family in this species remains largely uncharacterized. In [...] Read more.
The SQUAMOSA promoter-binding protein-like (SPL/SBP) family plays crucial roles in multiple developmental processes. Phalaenopsis equestris is a key ornamental and breeding species known for producing abundant colorful flowers on a single inflorescence. The SPL gene family in this species remains largely uncharacterized. In this study, 15 SPL genes were identified, all encoding proteins that are bioinformatically predicted to be nuclear-localized, hydrophilic, and unstable, with conserved SBP domains. Phylogenetic and collinearity analyses revealed a closer evolutionary relationship with rice SPLs than Arabidopsis SPLs. Conserved motif and gene structure analyses showed that subfamily II members possess more motifs and introns, implying functional complexity. Five PeqSPLs contained transmembrane domains, suggesting potential dual nuclear/cytoplasmic roles. Promoter analysis revealed abundant cis-elements responsive to light, stress, and phytohormones. Expression profiling across tissues showed that PeqSPL2, PeqSPL3, and PeqSPL5 exhibited broad expression and PeqSPL10 exhibited predominantly high expression in flowers, indicating possible roles in normal growth and floral development. This study provides a foundation for further functional exploration of PeqSPL genes in P. equestris. Full article
(This article belongs to the Special Issue Orchid Conservation and Biodiversity)
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15 pages, 899 KB  
Article
Functional and Bioactive Characterization of Hemp Cake Proteins and Polyphenols from Non-Psychoactive Cannabis sativa
by María Quinteros, Paola Wilcaso, Carlos Ribadeneira and Edgar Vilcacundo
Processes 2025, 13(10), 3184; https://doi.org/10.3390/pr13103184 - 7 Oct 2025
Viewed by 365
Abstract
The agro-industrial residue known as hemp cake, derived from non-psychoactive Cannabis sativa L., represents a sustainable alternative for the development of protein-rich ingredients. In Ecuador, particularly in Bolívar Province, this by-product has been underutilized. However, similar challenges in the valorization of hemp residues [...] Read more.
The agro-industrial residue known as hemp cake, derived from non-psychoactive Cannabis sativa L., represents a sustainable alternative for the development of protein-rich ingredients. In Ecuador, particularly in Bolívar Province, this by-product has been underutilized. However, similar challenges in the valorization of hemp residues have also been reported in other regions, where they are often discarded or used as low-value animal feed. These issues are not exclusive to Bolívar, and since protein stability depends primarily on drying and storage rather than geographic relocation, the valorization strategies proposed in this study can be extrapolated to other production zones. Protein concentrates were extracted from freeze-dried flower cake (TL, freeze-dried hemp cake) and oven-dried flower cake (TS, oven-dried hemp cake) using isoelectric precipitation, yielding protein concentrates from freeze-dried cake (CPL) and oven-dried cake (CPS). Protein content was determined using the Dumas combustion method, the Bradford dye-binding method, and the bicinchoninic acid (BCA) method. Functional properties such as solubility, water absorption, oil absorption, foaming capacity, and foam stability were evaluated, together with total phenolic and flavonoid content and in vitro antioxidant and anti-inflammatory activity. Results demonstrated high protein values (up to 90.42%), remarkable functional properties, and strong bioactive potential, supporting hemp cake concentrates as sustainable alternatives for food, nutraceutical, and pharmaceutical applications Full article
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22 pages, 61125 KB  
Article
Drone-Based Marigold Flower Detection Using Convolutional Neural Networks
by Piero Vilcapoma, Ingrid Nicole Vásconez, Alvaro Javier Prado, Viviana Moya and Juan Pablo Vásconez
Processes 2025, 13(10), 3169; https://doi.org/10.3390/pr13103169 - 5 Oct 2025
Viewed by 367
Abstract
Artificial intelligence (AI) is an important tool for improving agricultural tasks. In particular, object detection methods based on convolutional neural networks (CNNs) enable the detection and classification of objects directly in the field. Combined with unmanned aerial vehicles (UAVs, drones), these methods allow [...] Read more.
Artificial intelligence (AI) is an important tool for improving agricultural tasks. In particular, object detection methods based on convolutional neural networks (CNNs) enable the detection and classification of objects directly in the field. Combined with unmanned aerial vehicles (UAVs, drones), these methods allow efficient crop monitoring. The primary challenge is to develop models that are both accurate and feasible under real-world conditions. This study addresses this challenge by evaluating marigold flower detection using three groups of CNN detectors: canonical models, including YOLOv2, Faster R-CNN, and SSD with their original backbones; modified versions of these detectors using DarkNet-53; and modern architectures, including YOLOv11, YOLOv12, and the RT-DETR. The dataset consisted of 392 images from marigold fields, which were manually labeled and augmented to a total of 940 images. The results showed that YOLOv2 with DarkNet-53 achieved the best performance, with 98.8% mean average precision (mAP) and 97.9% F1-score (F1). SSD and Faster R-CNN also improved, reaching 63.1% and 52.8%, respectively. Modern models obtained strong results: YOLOv11 and YOLOv12 reached 96–97%, and RT-DETR 93.5%. The modification of YOLOv2 allowed this classical detector to compete directly with, and even surpass, recent models. Precision–recall (PR) curves, F1-scores, and complexity analysis confirmed the trade-offs between accuracy and efficiency. These findings demonstrate that while modern detectors are efficient baselines, classical models with updated backbones can still deliver state-of-the-art results for UAV-based crop monitoring. Full article
(This article belongs to the Section AI-Enabled Process Engineering)
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21 pages, 7859 KB  
Article
Arabinogalactan Proteins Mark the Generative Cell–Vegetative Cell Interface in Monocotyledonous Pollen Grains
by Małgorzata Kapusta, Magdalena Narajczyk and Bartosz J. Płachno
Cells 2025, 14(19), 1549; https://doi.org/10.3390/cells14191549 - 3 Oct 2025
Viewed by 427
Abstract
Arabinogalactan proteins (AGPs: hydroxyproline-rich glycoproteins) are ubiquitous in plants and play various functions in cases of development and reproduction. In Arabidopsis thaliana some AGPs can work as markers for gametophytic cell differentiation (among others embryological structures they mark generative cell wall and/or plasma [...] Read more.
Arabinogalactan proteins (AGPs: hydroxyproline-rich glycoproteins) are ubiquitous in plants and play various functions in cases of development and reproduction. In Arabidopsis thaliana some AGPs can work as markers for gametophytic cell differentiation (among others embryological structures they mark generative cell wall and/or plasma membrane, and also sperm cells). However, apart from Arabidopsis, this labeling of generative cell and sperm cells in pollen grains has only been observed in a few flowering plant species belonging to dicotyledons. No such studies are available in monocotyledons. The main aim of our study was to see whether AGPs would be present at the generative cell–vegetative cell interface in different monocotyledons (representatives of Asparagaceae, Amarylidaceae and Liliaceae), and we also wanted to test whether they would be the same AGPs as in dicotyledons. For the study, we selected Gagea lutea (L.) Ker Gawl., Ornithogalum nutans L. and Galanthus nivalis L. species that differ in shape and size of generative cells. Antibodies against arabinogalactan proteins AGPs were used, including JIM8, JIM13, JIM14, MAC207, LM2, LM14, JIM15 and JIM4. The localization of the examined compounds was determined using immunohistochemistry techniques. The key finding was that AGPs (detected with JIM8 and JIM13 antibodies) consistently mark the boundary between the generative cell and the surrounding vegetative cytoplasm, suggesting their association with the generative cell–vegetative cell interface in all species studied. Identifying such molecular markers in male gametophyte may enhance the understanding of gametophytic cell fate, sperm cell identity and the molecular mechanisms underlying fertilization. Such labeling may also be useful in studies on pollen development, species comparisons, or responses to environmental stresses. Full article
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21 pages, 7313 KB  
Article
Integrated Transcriptome and Metabolome Analyses Reveal the Roles of MADS-Box Genes in Regulating Flower Development and Metabolite Accumulation in Osmanthus fragran
by Qian Zhang, Jie Yang, Xiangling Zeng, Hongguo Chen, Yingting Zhang, Guifu Zhang, Zeqing Li, Xuan Cai and Jingjing Zou
Curr. Issues Mol. Biol. 2025, 47(10), 819; https://doi.org/10.3390/cimb47100819 - 3 Oct 2025
Viewed by 302
Abstract
The MADS-box transcription factors play essential roles in various processes of plant growth and development. Here, we identified 107 MADS-box genes in Osmanthus fragrans Lour. genome (OfMADS), encoding proteins ranging from 61 to 608 amino acids. Phylogenetic analysis classified these genes [...] Read more.
The MADS-box transcription factors play essential roles in various processes of plant growth and development. Here, we identified 107 MADS-box genes in Osmanthus fragrans Lour. genome (OfMADS), encoding proteins ranging from 61 to 608 amino acids. Phylogenetic analysis classified these genes into five subfamilies: MIKC*, MIKCC, , , and , with conserved motif architectures within subfamilies. Tandem and whole-genome duplications were identified as key drivers of OfMADS expansion. Cis-regulatory element analysis revealed enrichment for hormone response and developmental regulatory motifs, implicating roles in growth and flowering processes. Transcriptome dynamics across six floral developmental stages (bolting to petal shedding) uncovered 78 differentially expressed OfMADS genes, including 16 exhibiting flower-specific expressions. Integrated metabolome profiling demonstrated robust correlations between critical OfMADS regulators and scent metabolites. This nexus suggests a potential role of these OfMADS in regulating specialized metabolite biosynthesis pathways. Our multi-omics study provides insights into the regulatory hierarchy of OfMADS in coordinating floral morphogenesis and the accumulation of economically significant metabolites in O. fragrans. These findings establish a foundation for subsequent functional validation and molecular breeding of horticultural traits. Full article
(This article belongs to the Section Molecular Plant Sciences)
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20 pages, 7005 KB  
Article
Floral Characteristics and Reproductive Biology in Brazilian Melon Accessions: Insights from Commercial and Exotic Varieties
by Nadia Carolina Sanabria-Verón, Cláusio Antônio Ferreira de Melo, Glauber Henrique de Sousa Nunes, Delmira Da Costa Silva, Margarete Magalhães de Souza and Ronan Xavier Corrêa
Plants 2025, 14(19), 3047; https://doi.org/10.3390/plants14193047 - 1 Oct 2025
Viewed by 455
Abstract
Melon has great economic importance in Brazil, and flower development is the basis for fruit and seed production. The objective of this study was to elucidate the variability of flowering characteristics and to compare qualitative and quantitative reproductive variations in relation to pollen [...] Read more.
Melon has great economic importance in Brazil, and flower development is the basis for fruit and seed production. The objective of this study was to elucidate the variability of flowering characteristics and to compare qualitative and quantitative reproductive variations in relation to pollen viability and stigmatic receptivity in 21 genotypes, which includes 15 Brazilian accessions. In addition, we evaluated the influence of time on the growth of the pollen tube and its arrival at the ovule in vivo at different intervals (1 h, 2 h, 3 h) after hand pollination in three commercial varieties, one exotic accession, and two intervarietal hybrids, by epifluorescence technique. Three groups were distributed by the clustering method of Scott–Knott at 5% probability; group III included only commercial varieties for the flower width descriptor. C. melo germplasm presented 81% andromonoecious plants and 19% trimonoecious plants. Through the multivariate strategy, these 21 genotypes were distributed into six groups with distinct reproductive characteristics, and male flowering was accelerated compared to female flowering. Regarding pollen viability, it was greater than 95% according to staining methods. Pollen germination rate in vivo was affected by time, with an almost 12.5% increase between 1 h and 3 h after hand pollination, and the in vivo pollen germination in hybrids was lower than in commercial varieties. Brazilian accessions, despite stability in pollen viability and stigma receptivity, have great differences in reproductive terms, such as variations in the quantitative and qualitative characteristics of floral pieces and flowering. This work contributes to the knowledge on varieties, hybrids, exotic accession, and Brazilian melon germplasm by characterizing some of their main agricultural traits, such as reproduction floral biology, and opens up prospects for yield evaluation in plant breeding programs. Full article
(This article belongs to the Special Issue Genetics and Genomics of Plant Reproductive Systems)
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18 pages, 8385 KB  
Article
Genome-Wide Identification of the TCP Gene Family in Chimonanthus praecox and Functional Analysis of CpTCP2 Regulating Leaf Development and Flowering in Transgenic Arabidopsis
by Yinzhu Cao, Gangyu Guo, Huafeng Wu, Xia Wang, Bin Liu, Ximeng Yang, Qianli Dai, Hengxing Zhu, Min Lu, Haoxiang Zhu, Zheng Li, Chunlian Jin, Shenchong Li and Shunzhao Sui
Plants 2025, 14(19), 3039; https://doi.org/10.3390/plants14193039 - 1 Oct 2025
Viewed by 315
Abstract
TCP transcription factors represent a crucial family of plant regulators that contribute significantly to growth and developmental processes. Although the TCP gene family has been extensively studied in various plant species, research on Chimonanthus praecox (wintersweet) remains limited. Here, we performed genome-wide identification [...] Read more.
TCP transcription factors represent a crucial family of plant regulators that contribute significantly to growth and developmental processes. Although the TCP gene family has been extensively studied in various plant species, research on Chimonanthus praecox (wintersweet) remains limited. Here, we performed genome-wide identification and analysis of the TCP gene family in C. praecox and identified 22 CpTCP genes. We further systematically examined the associated physicochemical properties, evolutionary relationships, gene structures, and regulatory features. Analysis revealed that all CpTCP proteins possess a conserved TCP domain, and subcellular localization prediction indicated their localization in the nucleus. Promoter analysis revealed that multiple cis-elements are associated with abiotic stress responses and plant growth regulation. Further analysis revealed high CpTCP2 expression in the leaves and stamen, with significantly increased levels during flower senescence. CpTCP2 expression was upregulated in response to methyl jasmonate (MeJA), salicylic acid, abscisic acid, and shade. CpTCP2 overexpression in Arabidopsis thaliana resulted in a reduced leaf area, delayed flowering, and increased rosette leaf numbers. Moreover, MeJA treatment accelerated leaf senescence in CpTCP2 transgenic Arabidopsis. These findings provide insights into the evolutionary characteristics of the TCP family in C. praecox, highlighting the functional role of CpTCP2 in regulating leaf development and flowering time in Arabidopsis, thereby offering valuable genetic resources for wintersweet molecular breeding. Full article
(This article belongs to the Special Issue Omics Approaches to Analyze Gene Regulation in Plants)
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17 pages, 3096 KB  
Article
Integrating Structural Bioinformatics and Functional Mechanisms of Sesquiterpene Synthases CARS and CADS in Lavandula angustifolia (Lavender)
by Dafeng Liu, Na Li, Huashui Deng, Daoqi Song and Hongjun Song
Int. J. Mol. Sci. 2025, 26(19), 9568; https://doi.org/10.3390/ijms26199568 - 30 Sep 2025
Viewed by 300
Abstract
Lavender species are economically valuable plants, widely cultivated for their essential oils (EOs), which include sesquiterpenes. The sesquiterpenes caryophyllene and cadinol are major constituents, contributing woody and balsamic notes. However, the specific enzymes catalyzing their formation in lavender have not been elucidated. This [...] Read more.
Lavender species are economically valuable plants, widely cultivated for their essential oils (EOs), which include sesquiterpenes. The sesquiterpenes caryophyllene and cadinol are major constituents, contributing woody and balsamic notes. However, the specific enzymes catalyzing their formation in lavender have not been elucidated. This study reports the comprehensive functional and structural characterization of two pivotal sesquiterpene synthases from Lavandula angustifolia (lavender): caryophyllene synthase (CARS) and cadinol synthase (CADS). Mutation experiments were performed based on molecular docking predictions, revealing that negatively charged residues interact electrostatically with magnesium ions (Mg2+). Both deletion of 1–226 and 1–228 (∆1–226 and ∆1–228) display activity levels equivalent to their corresponding wild-type proteins, while deletions at positions 522–548 and 529–555 significantly enhanced enzyme activity. Additionally, the highest expression levels of CARS were in the flowers under white light for 8 h, while CADS exhibited peak expression in the leaves under white light for 12 h. These findings deepen our understanding of the regulatory mechanisms involved in sesquiterpene biosynthesis in lavender and provide insights for genetic engineering strategies aimed at enhancing EO production. Such advances could also inform the development of cosmetic, personal care, and medicinal products. Full article
(This article belongs to the Section Molecular Plant Sciences)
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