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17 pages, 1827 KB  
Review
The Role of Cadherin 17 (CDH17) in Cancer Progression via Wnt/β-Catenin Signalling Pathway: A Systematic Review and Meta-Analysis
by Bipusha Tha Shrestha, Yahui Feng, Aaron Lad, Anthony Bates, Jing Chen, Karen Brown, Feier Zeng and Ning Wang
Int. J. Mol. Sci. 2025, 26(20), 9838; https://doi.org/10.3390/ijms26209838 (registering DOI) - 10 Oct 2025
Abstract
Cadherin 17 (CDH17) is a cell adhesion glycoprotein essential for epithelial integrity. It is frequently overexpressed in various cancers, where it is associated with aggressive behaviour. While evidence indicates that CDH17 functions as an upstream regulator of Wnt/β-catenin signalling, findings are inconsistent across [...] Read more.
Cadherin 17 (CDH17) is a cell adhesion glycoprotein essential for epithelial integrity. It is frequently overexpressed in various cancers, where it is associated with aggressive behaviour. While evidence indicates that CDH17 functions as an upstream regulator of Wnt/β-catenin signalling, findings are inconsistent across tumour types, limiting the assessment of CDH17 as a biomarker or therapeutic target for Wnt pathway in cancer. In this study, we systematically review and meta-analyse the relationship between CDH17 and Wnt/β-catenin signalling in human cancers and evaluate whether CDH17 modulation affects tumour behaviour through Wnt-related mechanisms. Our search of Medline, Web of Science and Scopus identified five studies examining CDH17 expression in the Wnt/β-catenin pathway in vitro and in vivo. All five studies identified CDH17 as a key driver of canonical Wnt signalling, directly influencing cancer progression in hepatocellular carcinoma (HCC), gastric cancer (GC), and colorectal cancer (CRC). Meta-analysis (MA) showed that CDH17 inhibition consistently reduced Wnt/β-catenin downstream T-cell factor/lymphoid enhancer-binding factor (TCF/LEF) transcriptional activity (MD = −1.32, 95% CI: −1.64 to −0.99, p < 0.00001). Narrative synthesis found that CDH17 suppression decreased total and nuclear β-catenin, phosphorylated glycogen synthase kinase-3 beta (GSK-3β), and cyclin D1 while increasing tumour suppressors, retinoblastoma (Rb) and p53/p21. These changes were associated with reduced proliferation, colony formation, migration, invasion and cell cycle arrest. In vivo, CDH17 suppression resulted in 80–95% tumour growth suppression (Mean Difference (MD) = −96.67, 95% CI: [−144.35, −48.98], p < 0.0001), with immunohistochemistry confirming cytoplasmic β-catenin sequestration and lower cyclin D1 levels. Collectively, these findings show CDH17 as a critical upstream effector sustaining Wnt/β-catenin signalling, cancer progression, tumour proliferation, stem cell properties, and metastasis, and support CDH17 inhibition as a promising therapeutic target across multiple cancer types. Full article
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24 pages, 3171 KB  
Article
Investigating the Biocontrol and Plant Growth-Promoting Potential of Pseudomonas yamanorum for Sustainable Management of Tomato Early Blight (Alternaria alternata)
by Lobna Hajji-Hedfi, Takwa Wannassi, Amira Khlif, Nyasha J. Kavhiza and Nazih Y. Rebouh
Plants 2025, 14(20), 3117; https://doi.org/10.3390/plants14203117 (registering DOI) - 10 Oct 2025
Abstract
Tomato (Solanum lycopersicum L.) is among the most economically significant and nutritionally valuable vegetable crops grown globally. However, fungal diseases such as Early Blight caused by Alternaria alternata are a major factor limiting yield and fruit quality in tomato production. This study [...] Read more.
Tomato (Solanum lycopersicum L.) is among the most economically significant and nutritionally valuable vegetable crops grown globally. However, fungal diseases such as Early Blight caused by Alternaria alternata are a major factor limiting yield and fruit quality in tomato production. This study investigates the biocontrol potential of locally isolated rhizobacterium Pseudomonas yamanorum against A. alternata, the causal agent of early blight in tomato, under both in vitro and in planta conditions. In vitro assays demonstrated significant antifungal activity; in the dual confrontation assay, P. yamanorum (108 CFU/mL) reduced A. alternata mycelial growth by 68.7%, while spore germination was inhibited by 88.7%. In planta trials demonstrated that plants treated with P. yamanorum (107 CFU/mL) alone exhibited the lowest disease severity (2.5). The treatments also significantly enhanced plant growth, with shoot length reaching 45 cm versus 26 cm in infected controls. Biochemical analyses revealed increased catalase (94.84 units mg−1 protein min−1), peroxidase (5.83), and ascorbate peroxidase (67.01) activities in treated plants. Total polyphenol and protein contents also increased (0.81 mg/g and 15.82 mg/g, respectively). Furthermore, P. yamanorum treatments maintained fruit quality parameters such as firmness (3.13), sugar content (6.43 °Brix), and juice yield (55.88%), while reducing malondialdehyde (2.02 µmol/g Dry Weight) and electrical conductivity (0.59 mS/cm). These findings highlight P. yamanorum as a promising biocontrol agent and plant growth-promoting bacteria that improve disease resistance, which can be combined with salicylic acid to further enhance crop vigor and fruit quality under biotic stress. Full article
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18 pages, 402 KB  
Article
How Do Digital Skills Affect Rural Households’ Incomes in China? An Explanation Derived from Factor Allocation
by Jie Wang, Zhijian Cai, Zhen Zeng and Chang Liu
Sustainability 2025, 17(20), 8967; https://doi.org/10.3390/su17208967 (registering DOI) - 10 Oct 2025
Abstract
Raising rural household income is central to narrowing the rural–urban gap and advancing common prosperity. Using data from the China Family Panel Studies (CFPS), this study examines the impact of digital skills, a key for human capital, on rural Chinese households’ income and [...] Read more.
Raising rural household income is central to narrowing the rural–urban gap and advancing common prosperity. Using data from the China Family Panel Studies (CFPS), this study examines the impact of digital skills, a key for human capital, on rural Chinese households’ income and uses a fixed-effects model and the instrumental variable method to address endogeneity. The study finds that digital skills raise total household income, and each additional skill is associated with an increase of CNY 1678. By skill type, online business skills have the largest effect, followed by work–study skills, while entertainment–social skills are negatively associated with income. Heterogeneity analyses indicate larger gains for households with lower educational attainment and lower income, showing that a stronger regional digital environment amplifies these effects. Mechanism tests point to factor reallocation toward the nonfarm sector, via higher probabilities of off-farm employment and entrepreneurship and improved access to formal credit, as the primary pathway. Consistent with these channels, digital skills increase wages and operating income and reduce inequality in these components, as well as benefitting total income, but they have no detectable effect on property or transfer income or their dispersion. These findings point to key implications for boosting rural income growth and reducing inequality, namely strengthening digital skill development and optimizing the digital environment to enhance rural households’ endogenous income-generating capacity. Full article
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19 pages, 1175 KB  
Article
The Effect of the Clinical-Pathological CPS+EG Staging System on Survival Outcomes in Patients with HER2-Positive Breast Cancer Receiving Neoadjuvant Treatment: A Retrospective Study
by Seval Orman, Miray Aydoğan, Oğuzcan Kınıkoğlu, Sedat Yıldırım, Nisanur Sarıyar Busery, Hacer Şahika Yıldız, Ezgi Türkoğlu, Tuğba Kaya, Deniz Işık, Seval Ay Ersoy, Hatice Odabaş and Nedim Turan
Medicina 2025, 61(10), 1813; https://doi.org/10.3390/medicina61101813 - 9 Oct 2025
Abstract
Background and Objectives: To evaluate the prognostic value of the Clinical–Pathologic Stage–Estrogen receptor status and Grade (CPS+EG) staging system, which combines clinical staging, pathological staging, oestrogen receptor (ER) status, and tumour grade in predicting survival outcomes in patients with human epidermal growth [...] Read more.
Background and Objectives: To evaluate the prognostic value of the Clinical–Pathologic Stage–Estrogen receptor status and Grade (CPS+EG) staging system, which combines clinical staging, pathological staging, oestrogen receptor (ER) status, and tumour grade in predicting survival outcomes in patients with human epidermal growth factor receptor 2 (HER2)-positive breast cancer receiving neoadjuvant therapy (NACT). Materials and Methods: A retrospective review was performed on 245 female breast cancer patients who received anti-HER2 therapy alongside NACT at the Medical Oncology Department of Kartal Dr Lütfi Kırdar City Hospital, University of Health Sciences, from April 2012 to June 2024. The CPS+EG score was calculated using the MD Anderson Cancer Centre neoadjuvant treatment response calculator. Patients were categorised into two groups based on their CPS+EG score < 3 and ≥3. The primary outcomes assessed were disease-free survival (DFS) and overall survival (OS). Kaplan–Meier and log-rank tests were utilised for time-to-event analysis; Cox regression was used for multivariate analysis. A significance level of ≤0.05 was considered. Results: The median age of the patient cohort was 51 years (range: 27–82 years). Among these patients, 183 (74.6%) had a CPS+EG score less than 3, while 62 (25.3%) exhibited a score of 3 or higher. The median follow-up duration was 37.6 months. The pathological complete response (pCR) rate across the entire cohort was 51.8%. Specifically, the pCR rate was 56.3% in the group with CPS+EG scores below 3, and 38.7% in those with scores of 3 or higher (p = 0.017). Patients with CPS+EG scores less than 3 demonstrated superior overall survival (OS), which reached statistical significance in univariate analysis. Multivariate analysis identified the CPS+EG score as an independent prognostic factor for both overall survival and disease-free survival (DFS), with hazard ratios of 0.048 (95% CI: 0.004–0.577, p = 0.017) and 0.35 (95% CI: 0.14–0.86, p = 0.023), respectively. Conclusions: The CPS+EG score is an independent and practical prognostic marker, particularly for overall survival, in patients with HER2-positive breast cancer who have received neoadjuvant therapy. Patients with a CPS+EG score < 3 have higher pCR rates and survival rates. When used in conjunction with pCR, it can improve risk categorisation and contribute to the individualisation of adjuvant strategies in the post-neoadjuvant period. Due to its ease of calculation and lack of additional costs, this score can be instrumental in clinical practice for identifying high-risk patients. Our findings support the integration of the CPS+EG score into routine clinical decision-making processes, although prospective validation studies are necessary. Full article
(This article belongs to the Special Issue New Developments in Diagnosis and Management of Breast Cancer)
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18 pages, 17639 KB  
Article
Phenological Shifts of Vegetation in Seasonally Frozen Ground and Permafrost Zones of the Qinghai–Tibet Plateau
by Tianyang Fan, Xinyan Zhong, Chong Wang, Lingyun Zhou and Zhinan Zhou
Remote Sens. 2025, 17(19), 3391; https://doi.org/10.3390/rs17193391 - 9 Oct 2025
Abstract
Vegetation phenology serves as a crucial indicator reflecting vegetation responses to the growth environment and climate change. Existing studies have demonstrated that in permafrost regions, the impact of frozen soil changes on vegetation phenology is more direct and pronounced compared to climate factors. [...] Read more.
Vegetation phenology serves as a crucial indicator reflecting vegetation responses to the growth environment and climate change. Existing studies have demonstrated that in permafrost regions, the impact of frozen soil changes on vegetation phenology is more direct and pronounced compared to climate factors. Amid the slowdown of global warming in the 21st century, permafrost dynamics continued to drive uncertain variations in vegetation phenological stages across the Qinghai–Tibet Plateau (QTP). Using MODIS Normalized Difference Vegetation Index (NDVI) and Enhanced Vegetation Index (EVI) data during 2001–2024, this study derived vegetation phenological parameters and analyzed their spatiotemporal patterns on the QTP. The results indicate that overall, the start of growing season (SOS) was advanced, the end of growing season (EOS) was delayed, and the length of growing season (LOG) was extended throughout the study period. Additionally, divergent phenological trends were observed across three distinct phases, and regarding frozen soil types, vegetation phenology in permafrost and seasonally frozen ground regions exhibited distinct characteristics. From 2001 to 2024, both permafrost and seasonally frozen ground regions showed an advanced SOS and prolonged LOG, but significant differences were observed in EOS dynamics. For vegetation types, alpine meadow displayed advanced SOS and EOS, alongside an extended LOG. The alpine steppe exhibited advanced SOS and delayed EOS with an extended LOG. Alpine desert displayed SOS advancement and EOS delay, alongside LOG extension. These findings revealed variations in vegetation phenological changes under different frozen soil types and highlighted divergent responses of distinct frozen soil types to climate change. They suggested that the influence of frozen soil types should be considered when investigating vegetation phenological dynamics at the regional scale. Full article
28 pages, 8608 KB  
Article
Microbiota–Metabolite–Host Crosstalk Mediates the Impact of Dietary Energy Levels on Colonic Homeostasis in High-Altitude Ruminants
by Qinran Yu, Ning Li, Pengjia Bao, Chun Huang, Qingbo Zheng, Tong Wang, Chaofan Ma, Jingying Deng, Fengtao Jiang, Jianlei Jia and Ping Yan
Animals 2025, 15(19), 2929; https://doi.org/10.3390/ani15192929 - 9 Oct 2025
Abstract
The colon plays a crucial role in energy metabolism and intestinal health of ruminants during various physiological stages. Plateau ruminants have long been subjected to extreme environments characterized by hypoxia, cold, and nutritional scarcity, which makes their dependence on energy metabolism particularly pronounced. [...] Read more.
The colon plays a crucial role in energy metabolism and intestinal health of ruminants during various physiological stages. Plateau ruminants have long been subjected to extreme environments characterized by hypoxia, cold, and nutritional scarcity, which makes their dependence on energy metabolism particularly pronounced. However, existing research on the regulatory effects of dietary energy levels on the colonic function of plateau ruminants is still quite limited. This study involved 60 healthy male Pamir yaks with consistent body conditions, which were randomly divided into three groups: a low-energy diet group (YG, Neg 1.53 MJ/kg), a medium-energy diet group (QG, Neg 2.12 MJ/kg), and a high-energy diet group (RG, Neg 2.69 MJ/kg). Each yak was provided with 5 kg of mixed feed daily over a 170-day feeding trial. The results indicated that a high-energy diet enhanced growth performance in yaks (p < 0.05). However, it also induced local colonic inflammation, decreased levels of immune factors (IgA, IgG, and IL-10), and increased the abundance of potentially pathogenic bacteria, such as Klebsiella and Campylobacter (p < 0.05). Conversely, a medium-energy diet fostered the proliferation of beneficial bacteria such as Bradymonadales, Parabacteroides, and Mogibacterium (p < 0.05), and preserved immune homeostasis. Additionally, multi-omics analysis revealed that the QG group was significantly enriched in key metabolic pathways, including pyruvate metabolism and glycine, serine, and threonine metabolism and panto-thenate and CoA biosynthesis pathways, among others (p < 0.05), demonstrating a synergistic regulatory effect among the microbiome, metabolism, and host. In summary, a moderate-energy diet can promote the proliferation of beneficial bacteria in the extreme environment of the plateau. By regulating pathways such as Amino acid, Nucleotide, and Lipid metabolism, it coordinates the expression of key host genes and metabolite levels, effectively balancing immune signals and energy metabolism. This interaction establishes a beneficial microbial-metabolism-host pattern that supports colon health. Full article
(This article belongs to the Section Animal Nutrition)
30 pages, 1346 KB  
Article
Spatio-Temporal Coupling of Carbon Efficiency, Carbon Sink, and High-Quality Development in the Greater Chang-Zhu-Tan Urban Agglomeration: Patterns and Influences
by Yong Guo, Lang Yi, Jianbo Zhao, Guangyu Zhu and Dan Sun
Sustainability 2025, 17(19), 8957; https://doi.org/10.3390/su17198957 (registering DOI) - 9 Oct 2025
Abstract
Under the framework of the “dual carbon” goals, promoting the coordinated development of carbon emission efficiency, carbon sink capacity, and high-quality growth has become a critical issue for regional sustainability. Using panel data from 2006 to 2021, this study systematically investigates the three-dimensional [...] Read more.
Under the framework of the “dual carbon” goals, promoting the coordinated development of carbon emission efficiency, carbon sink capacity, and high-quality growth has become a critical issue for regional sustainability. Using panel data from 2006 to 2021, this study systematically investigates the three-dimensional coupling coordination among carbon emission efficiency, carbon sink capacity, and high-quality development in the Greater Chang-Zhu-Tan urban agglomeration. The spatiotemporal evolution, spatial correlation characteristics, and influencing factors of the coupling coordination were also explored. The results indicate that the coupling coordination system exhibits an evolutionary trend of overall stability with localized differentiation. The overall coupling degree remains in the “running-in” stage, while the coordination level is still in a marginally coordinated state. Spatially, the pattern has shifted from “northern leadership” to “multi-polar support,” with Yueyang achieving intermediate coordination, four cities including Changde reaching primary coordination, and three cities including Loudi remaining imbalanced. Spatial correlation has weakened from significant to insignificant, with Xiangtan showing a “low–low” cluster and Hengyang displaying a “high–low” cluster. The evolution of hot and cold spots has moved from marked differentiation to a more balanced distribution, as reflected by the disappearance of cold spots. The empirical analysis confirms a three-dimensional coupling mechanism: ecologically rich regions attain high coordination through carbon sink synergies; economically advanced areas achieve decoupling through innovation-driven development; while traditional industrial cities, despite facing the “green paradox,” demonstrate potential for leapfrog progress through transformation. Among the influencing factors, industrial structure upgrading emerged as the primary driver of spatial differentiation, though with a negative impact. Government support also exhibited a negative effect, whereas the interaction between environmental regulation and both government support and economic development was found to be significant. Full article
24 pages, 889 KB  
Systematic Review
From BIM to UAVs: A Systematic Review of Digital Solutions for Productivity Challenges in Construction
by Victor Francisco Saraiva Landim, João Poças Martins and Diego Calvetti
Appl. Sci. 2025, 15(19), 10843; https://doi.org/10.3390/app151910843 - 9 Oct 2025
Abstract
The construction industry faces persistent productivity challenges despite the widespread adoption of advanced digital technologies. This systematic review examines how digital technologies contribute to improving on-site labor productivity within the Architecture, Engineering, Construction, and Operations (AECOs) sector. Following the PRISMA methodology, 431 records [...] Read more.
The construction industry faces persistent productivity challenges despite the widespread adoption of advanced digital technologies. This systematic review examines how digital technologies contribute to improving on-site labor productivity within the Architecture, Engineering, Construction, and Operations (AECOs) sector. Following the PRISMA methodology, 431 records were initially identified, with 28 high-quality articles ultimately selected for analysis through rigorous screening and snowballing techniques. The reviewed technologies include Building Information Modeling (BIM), photogrammetry, LiDAR, augmented reality (AR), global navigation satellite systems (GNSSs), radio frequency identification (RFID), and unmanned aerial vehicles (UAVs), which were categorized into three key areas: factors affecting productivity, modeling and evaluation, and productivity improvement methods. Findings highlight that these technologies collectively enhance resource allocation, reduce labor costs, and improve project scheduling through better coordination. Whilst digital technologies demonstrate substantial impact on construction productivity, further research is needed to quantify long-term benefits and address scalability challenges across different project contexts and organizational structures. Ultimately, the review concludes that digital technologies play a crucial role in enhancing construction productivity, highlighting the need for further research to assess long-term advantages and scalability across diverse construction environments. These technological advancements are essential for modernizing the industry and supporting sustainable growth in the digital transition era. Full article
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28 pages, 4786 KB  
Review
Assessment of Climate Vulnerability Indices for Coastal Tourism Destinations
by Beatriz Gasalla-López, Manuel Arcila-Garrido and Juan Adolfo Chica-Ruiz
Atmosphere 2025, 16(10), 1171; https://doi.org/10.3390/atmos16101171 - 9 Oct 2025
Abstract
Coastal ecosystems are crucial for territorial development but they face increasing pressure from population growth and climate change. These factors threaten ecosystems, communities, and tourism infrastructure. It is essential to assess vulnerability to achieve adaptation and indices are widely used for this purpose [...] Read more.
Coastal ecosystems are crucial for territorial development but they face increasing pressure from population growth and climate change. These factors threaten ecosystems, communities, and tourism infrastructure. It is essential to assess vulnerability to achieve adaptation and indices are widely used for this purpose due to their simplicity. However, inconsistencies persist in definitions, methodologies, dimensions, and variable selection. This systematic review of 43 second-generation studies analyzes the evolution of conceptual approaches, identifies the most common indicators, and examines index methodologies. The results reveal that, although the IPCC has updated its definition of vulnerability, many publications still use previous conceptual frameworks. While temperature is relevant to tourism, most studies focus on increasing sea level and its effects. In some cases, social and economic dimensions are treated jointly whereas in other studies they are considered separately. Variable selection remains case-specific and a robust, standardized framework is still lacking, especially for social aspects. Despite the undoubted importance of tourism, specific research on this sector is scarce. This review underscores the need for standardized indices tailored to coastal tourism management under climate change. Future research directions are also proposed. Full article
(This article belongs to the Section Biosphere/Hydrosphere/Land–Atmosphere Interactions)
36 pages, 2431 KB  
Article
Integrating POI-Driven Functional Attractiveness into Cellular Automata for Urban Spatial Modeling: Case Study of Yan’an, China
by Xuan Miao, Na Wei and Dawei Yang
Buildings 2025, 15(19), 3624; https://doi.org/10.3390/buildings15193624 - 9 Oct 2025
Abstract
Urban growth models often prioritize environmental and accessibility factors while underestimating behavioral and functional dynamics. This study develops a POI-enhanced Cellular Automata (CA) framework to simulate urban expansion by incorporating three semantic indicators derived from Point-of-Interest (POI) data—density (PD), diversity (PDI), and functional [...] Read more.
Urban growth models often prioritize environmental and accessibility factors while underestimating behavioral and functional dynamics. This study develops a POI-enhanced Cellular Automata (CA) framework to simulate urban expansion by incorporating three semantic indicators derived from Point-of-Interest (POI) data—density (PD), diversity (PDI), and functional centrality (FC). Taking Yan’an, China, as a case, the model integrates these indicators with terrain and infrastructure variables via logistic regression to estimate land-use transition probabilities. To ensure robustness, spatial block cross-validation was adopted to reduce spatial autocorrelation bias. Results show that the POI-based model outperforms the baseline in both Kappa and Figure of Merit metrics. High-density and mixed-function POI zones correspond with compact infill growth, while high-centrality zones predict decentralized expansion beyond administrative cores. These findings highlight how functional semantics sharpen spatial prediction and uncover latent behavioral demand. Policy implications include using POI-informed maps for adaptive zoning, ecological buffer protection, and growth hotspot management. The study contributes a transferable workflow for embedding behavioral logic into spatial simulation. However, limitations remain: the model relies on static POI data, omits vertical (3D) development, and lacks direct comparison with alternative models like Random Forest or SVM. Future research could explore dynamic POI trajectories, integrate 3D building forms, or adopt agent-based modeling for richer institutional representation. Overall, the approach enhances both the accuracy and interpretability of urban growth modeling, providing a flexible tool for planning in functionally evolving and ecologically constrained cities. Full article
(This article belongs to the Section Architectural Design, Urban Science, and Real Estate)
18 pages, 3451 KB  
Article
Modelling Diameter Distribution in Near-Natural European Beech Forests: Are Geo-Climatic Variables Alone Sufficient?
by Živa Bončina, Christian Rosset and Matija Klopčič
Forests 2025, 16(10), 1556; https://doi.org/10.3390/f16101556 - 9 Oct 2025
Abstract
Diameter distribution is an important indicator of stand structure and an input for many forest growth models. It is commonly modelled using theoretical functions, in which distribution parameters are expressed as a function of stand, geo-climatic and other predictors. However, modelling diameter distributions [...] Read more.
Diameter distribution is an important indicator of stand structure and an input for many forest growth models. It is commonly modelled using theoretical functions, in which distribution parameters are expressed as a function of stand, geo-climatic and other predictors. However, modelling diameter distributions in near-natural forests remains limited, and the influence of geo-climatic factors has not been systematically assessed. Using data from 6759 sample plots, our aims were (i) to develop models of the scale (b) and shape (c) parameters of the two-parameter Weibull function for near-natural beech forests in Slovenia; (ii) to examine whether diameter distributions can be reliably modelled using only geo-climatic variables; and (iii) to determine whether separate models are required for different beech forest types. A broad set of stand, geo-climatic and forest management variables was considered in the modelling procedure. The results indicate that stand variables had the strongest influence, while geo-climatic variables were included in the best-performing models, but had negligible effects. The importance of stand-level variables over geo-climatic variables was highlighted. Models based solely on geo-climatic predictors performed poorly and are unsuitable for practical forestry applications. Model performance did not differ substantially across forest types, suggesting that separate models for forest types are unnecessary. Full article
(This article belongs to the Section Forest Ecology and Management)
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14 pages, 4433 KB  
Article
Saucerneol D Suppresses the Growth of Helicobacter pylori and Their Virulence Factors
by Su Man Kim, Hyun Jun Woo, Zhongduo Yang, Tiankun Zhao, Ji Yeong Yang and Sa-Hyun Kim
Curr. Issues Mol. Biol. 2025, 47(10), 828; https://doi.org/10.3390/cimb47100828 (registering DOI) - 9 Oct 2025
Abstract
Helicobacter pylori infects the human stomach and causes various gastrointestinal diseases. Saucerneol D is a type of lignan, which is a polyphenol compound that exists naturally in plants, and it is abundant in flaxseed, sesame seeds, whole grains, vegetables, and fruits. Saucerneol D [...] Read more.
Helicobacter pylori infects the human stomach and causes various gastrointestinal diseases. Saucerneol D is a type of lignan, which is a polyphenol compound that exists naturally in plants, and it is abundant in flaxseed, sesame seeds, whole grains, vegetables, and fruits. Saucerneol D is found in Saurus chinensis extract and has been reported to exert a variety of effects, such as antioxidant and anti-inflammatory abilities. However, its antibacterial effect against H. pylori has not been reported; therefore, we analyzed the effect of saucerneol D on H. pylori in the present study. Changes in the expression of pathogenic factors and gene transcription in H. pylori were observed after treatment with saucerneol D using Western blotting and RT-PCR. It was confirmed that saucerneol D suppressed the growth of H. pylori by decreasing the expression of the genes dnaN and polA, which are required for bacterial replication. Saucerneol D also reduced the secretion of the major pathogenic toxin protein, CagA, by downregulating the expression of type IV secretion system-composing proteins. Furthermore, saucerneol D reduced ammonia production by inhibiting the expression of urease proteins, which are essential for the survival of H. pylori in the acidic gastric environment. Additionally, saucerneol D decreased the expression of flaB, potentially reducing motility. Finally, it was confirmed that the expression of the sabA gene, associated with cell adhesion, was reduced. These results suggest that saucerneol D inhibits the growth of H. pylori and the expression of several pathogenic factors, indicating that saucerneol D has an antimicrobial effect against H. pylori. Full article
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22 pages, 3343 KB  
Article
Spatio-Temporal Evolution and Synergistic Development of Urban Road Infrastructure and Urbanization: Evidence from 101 Chinese Cities
by Mengzhen Ding, Jun Cai, Jiaqi Xu, Qiyao Yang, Feiyang Chen and Yishuang Wu
Systems 2025, 13(10), 885; https://doi.org/10.3390/systems13100885 - 9 Oct 2025
Abstract
Balancing the development of urban road infrastructure (URI) with the pace of urbanization is crucial to supporting high-quality urban growth. This study constructed a comprehensive evaluation framework of URI and urbanization using data from 101 Chinese cities between 2002 and 2021. The spatio-temporal [...] Read more.
Balancing the development of urban road infrastructure (URI) with the pace of urbanization is crucial to supporting high-quality urban growth. This study constructed a comprehensive evaluation framework of URI and urbanization using data from 101 Chinese cities between 2002 and 2021. The spatio-temporal characteristics of URI and urbanization were assessed using the entropy weighting method and the relative development index (RDI). Key variables were identified through the obstacle degree model and further refined via relative importance analysis. To investigate the nonlinear interactions among the most influential factors, a random forest model was employed in combination with SHapley Additive exPlanations (SHAP). The results revealed three key findings: (1) both URI and urbanization levels exhibited overall upward trends during the study period, although notable disparities were observed across cities; (2) URI development generally outpaced urbanization, indicating a lack of synergy between the two systems; and (3) key determinants of this mismatch included road density, total road area, the number of streetlights per unit road length, resident population size, and educational human capital. By integrating multidimensional URI and urbanization metrics in a comprehensive evaluation framework, this study provides new insights into the spatial synergy mechanisms and supports the formulation of tier-specific urban planning strategies. Full article
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26 pages, 1029 KB  
Review
Exploring Fungal Communication Mechanisms in the Rhizosphere Microbiome for a Sustainable Green Agriculture
by Jing Gao, Anqi Dong, Jiayi Li, Jiayu Xu, Zhihong Liang and Antonio Francesco Logrieco
J. Fungi 2025, 11(10), 726; https://doi.org/10.3390/jof11100726 - 9 Oct 2025
Abstract
In the long-term evolutionary process, species maintain a natural balance within certain limits through communication. As plants grow and function as producers, root enrichment fosters a dynamic rhizosphere microbiome, which serves not only as a disintegrator within the ecological niche but also as [...] Read more.
In the long-term evolutionary process, species maintain a natural balance within certain limits through communication. As plants grow and function as producers, root enrichment fosters a dynamic rhizosphere microbiome, which serves not only as a disintegrator within the ecological niche but also as a medium for interaction between the host and the soil environment. The life cycle of fungi within the microbiome alternates between single-cell resting spores and multicellular trophic mycelia. This cycle not only establishes a stable rhizosphere environment but also plays a crucial role in regulating both intra- and interspecific information transmission, significantly impacting the environment and plant health. The rhizosphere microbiome, particularly the fungi it contains, can be harnessed to repair environmental damage and either promote the growth of the plant host or inhibit pathogens. However, the mechanisms underlying these actions remain inadequately understood, hindering the advancement of artificial regulation. Additionally, the variability of influencing factors, along with unstable genes and traits, poses challenges to industrial development. In conclusion, this paper focuses on the fungal components of the rhizosphere microbiome, introduces the mechanisms of communication and current applications, and further analyzes existing bottlenecks and potential solutions. The aim is to provide theoretical support for achieving green, sustainable agriculture through biological means. Full article
(This article belongs to the Section Environmental and Ecological Interactions of Fungi)
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17 pages, 4443 KB  
Article
Physiological and Transcriptional Responses of Sorghum Seedlings Under Alkali Stress
by Xinyu Liu, Bo Wang, Yiyu Zhao, Min Chu, Han Yu, Di Gao, Jiaheng Wang, Ziqi Li, Sibei Liu, Yuhan Li, Yulei Wei, Jinpeng Wei and Jingyu Xu
Plants 2025, 14(19), 3106; https://doi.org/10.3390/plants14193106 - 9 Oct 2025
Abstract
Saline-alkali stress seriously affects the growth and development of crops. Sorghum bicolor (L.), a C4 plant, is an important cereal crop in the world, and its growth and geographical distribution are limited by alkali conditions. In this study, sorghum genotypes with different alkaline [...] Read more.
Saline-alkali stress seriously affects the growth and development of crops. Sorghum bicolor (L.), a C4 plant, is an important cereal crop in the world, and its growth and geographical distribution are limited by alkali conditions. In this study, sorghum genotypes with different alkaline resistance (alkaline-sensitive Z1 and alkaline-tolerant Z14) were used as experimental materials to explore the effects of alkali on sorghum seedlings. RNA-seq technology was used to examine the differentially expressed genes (DEGs) in alkali-tolerant Z14 to reveal the molecular mechanism of sorghum response to alkali stress. The results showed that plant height, root length, and biomass of both cultivars decreased with time under 80 mM NaHCO3 treatment, but Z14 showed better water retention abilities. The photosynthetic fluorescence parameters and chlorophyll content also decreased, but the Fv/Fm, ETH, ΦPSII, and chlorophyll content of Z14 were significantly higher than those of Z1. The level of reactive oxygen species (ROS) increased in both sorghum varieties under alkali stress, while the enzyme activities of SOD, POD, CAT, and APX were also significantly increased, especially in Z14, resulting in lower ROS compared with Z1. Transcriptome analysis revealed around 6000 DEGs in Z14 sorghum seedlings under alkali stress, among which 267 DEGs were expressed in all comparison groups. KEGG pathways were enriched in the MAPK signaling pathway, plant hormone signal transduction, and RNA transport. bHLHs, ERFs, NACs, MYBs, and other transcription factor families are actively involved in the response to alkali stress. A large number of genes involved in photosynthesis and the antioxidant system were found to be significantly activated under alkali stress. In the stress signal transduction cascades, Ca2+ signal transduction pathway-related genes were activated, about 23 PP2Cs in ABA signaling were upregulated, and multiple MAPK and other kinase-related genes were triggered by alkali stress. These findings will help decipher the response mechanism of sorghum to alkali stress and improve its alkali tolerance. Full article
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