Search Results (94)

In this study, gut microorganisms of herbivorous grass carp, omnivorous carp, crucian carp, and aquatic microorganisms were collected from natural salt–alkali lakes and ponds in Xinjiang in winter to analyze their community structures. We sequenced 16S rRNA amplicons to investigate the composition and function of the microorganisms in the gut. PCoA analysis revealed that the gut microbiota of herbivorous and omnivorous fish formed two distinct clusters. Proteobacteria, Actinobacteria, Desulfobacterota, Firmicutes, and Chloroflexia are the dominant bacteria in the gut of fish. Proteobacteria, Bacteroidetes, Actinobacteria, Cyanobacteria, and Gram-negative bacteria are the dominant bacteria in the water. Carbohydrate- and protein-degrading bacteria, such as Desulfofustis, Lactiplantibacillus, and Vibrio, were predominant in omnivorous fish (CC and GRC), while cold-resistant bacteria, such as Shewanella and Psychromonas, were colonized in grass carp. This suggests that the same environment does not lead to similar gut bacteria, and that specific endogenous factors play a far more important role in shaping the microbiota composition than environmental factors. Full article

We adapt previous conceptual and numerical models of ciguateric food chains for the bioaccumulation of Pacific-ciguatoxin-1 (P-CTX-1) to a general model for bioaccumulation of P-CTX3C by parrotfish (Scarus frenatus, S. niger, and S. psittacus) that feed by scraping turf algae, and surgeonfish (Naso unicornis) that mostly feed on macroalgae. We also include the Indian Ocean parrotfish Chlorurus sordidus as a model for an excavator feeding parrotfish and include comparisons with the detritivorous surgeonfish Ctenochaetus striatus that brush-feeds on turf algae. Our food chain model suggests that, of the Gambierdiscus and Fukuyoa species so far analysed for ciguatoxin (CTX) production from the Pacific, only G. polynesiensis produces sufficient P-CTX3C to consistently produce parrotfish or N. unicornis with poisonous flesh. Our model suggests that insufficient CTX would accumulate into the flesh of parrotfish or N. unicornis to become poisonous from ingesting benthic dinoflagellates producing ≤0.03 pg P-CTX3C eq./cell, except from extended feeding times on high-density blooms and in the absence of significant depuration of CTX. Apart from G. polynesiensis, only G. belizeanus and possibly G. silvae and G. australes are thought to produce >0.03 pg P-CTX3C eq./cell in the Pacific. However, with relatively low maximum concentrations of ≤0.1 pg P-CTX3C eq./cell it is likely that their contribution is minimal. Our model also suggests that the differences between the area of turf algae grazed by parrotfish and similar sized C. striatus results in greater accumulation of CTX by this surgeonfish. This makes C. striatus a higher ciguatera risk than similar sized parrotfish, either directly for human consumption or as prey for higher trophic level fishes, consistent with poisoning data from Polynesia. It also suggests the possibility that C. striatus could bioaccumulate sufficient CTX to become mildly poisonous from feeding on lower toxicity Gambierdiscus or Fukuyoa species known to produce ≥0.02 P-CTX3C eq./cell. This indicates the potential for at least two food chain pathways to produce ciguateric herbivorous fishes, depending on the CTX concentrations produced by resident Gambierdiscus or Fukuyoa on a reef and the grazing capacity of herbivorous fish. However, only G. polynesiensis appears to produce sufficient P-CTX3C to consistently accumulate in food chains to produce higher trophic level fishes that cause ciguatera in the Pacific. We incorporate CTX depuration into our model to explore scenarios where mildly poisonous parrotfish or N. unicornis ingest CTX at a rate that is balanced by depuration to estimate the Gambierdiscus/Fukuyoa densities and CTX concentrations required for these fish to remain poisonous on a reef. Full article

The early developmental transition from endogenous to exogenous feeding is a critical period in carnivorous fish larvae, often associated with high mortality rates in aquaculture. Although trypsin, a key protease in protein digestion, is hypothesized to play a pivotal role in initiating exogenous feeding, the expression dynamics and functional contributions of trypsin and isoforms during early development remain poorly characterized in carnivorous species. This study explores the critical role of trypsin in the early feeding process of carnivorous fish, using mandarin fish (Siniperca chuatsi) as a model, which is a commercially valuable species that faces significant challenges during this phase due to its strict dependence on live prey and underdeveloped digestive system. Phylogenetic analysis indicates that, compared to herbivorous and omnivorous fish, carnivorous fish have evolved a greater number of trypsins, with a distinct branch specifically dedicated to try. RNA-seq data revealed the expression profiles of 13 trypsins during the early developmental stages of the mandarin fish. Most trypsins began to be expressed in large quantities with the appearance of the pancreas, reaching a peak prior to feeding. In situ hybridization revealed the spatiotemporal expression pattern of trypsins, starting from the pancreas in early development and later extending to the intestines. Furthermore, inhibition of trypsins activity successfully suppressed early oral feeding in mandarin fish, which was achieved by increasing the expression of cholecystokinin 2 (CCK2) and proopiomelanocortin (POMC) to suppress appetite. These findings enhance our understanding of the adaptive relationship between the ontogeny of the digestive enzyme system and feeding behavior in carnivorous fish. This research may help alleviate bottleneck issues in aquaculture production by improving the survival rate and growth performance of carnivorous fish during critical early life stages. Full article

Olfaction plays a crucial role in fish feeding behaviors and ecological adaptation. However, systematic studies on its transcriptional regulation and molecular evolutionary mechanisms in herbivorous and carnivorous fishes remain scarce. In this study, we analyzed four Xenocyprididae species: two herbivorous (Ctenopharyngodon idella and Megalobrama amblycephala) and two carnivorous (Elopichthys bambusa and Culter alburnus), using olfactory rosette transcriptome sequencing and cross-species comparisons. The number of unigenes per species ranged from 40,229 to 42,405, with BUSCO completeness exceeding 89.2%. Functional annotation was performed using six major databases. Olfactory-related candidate genes were identified based on Pfam domains (7tm_4) and KEGG pathways (ko04740), revealing 8–19 olfactory receptor genes per species. These candidate genes were predominantly enriched in the olfactory transduction and neuroactive ligand–receptor interaction pathways. A total of 3681 single-copy orthologous genes were identified, and their expression profiles exhibited clear interspecific divergence without forming strict clustering by dietary type. High-threshold differentially expressed trend genes (|log₂FC| ≥ 4) were enriched in pathways related to RNA processing, metabolite transport, and xenobiotic metabolism, suggesting that the olfactory system may participate in diverse adaptive responses. Ka/Ks analysis indicated that most homologous genes were under purifying selection, with only 0.87–2.07% showing positive selection. These positively selected genes were enriched in pathways related to immune response and neural regulation, implying potential roles in adaptive evolution associated with ecological behavior. Furthermore, the olfactory-related gene oard1 exhibited Ka/Ks > 1 in the E. bambusa vs. C. idella comparison. qRT-PCR validation confirmed the reliability of the RNA-Seq data. This work is the first to integrate two complementary indicators—expression trends and evolutionary rates—to systematically investigate the transcriptional regulation and molecular evolution of the olfactory system in Xenocyprididae species under the context of dietary differentiation, providing valuable reference data for understanding the perceptual basis of dietary adaptation in freshwater fish. Full article

Fish diel activity can affect the catch of fishing gear, such as gill nets, thereby influencing fishery resource assessment and management. This study investigated diel catch variations of primary fish species in Gehu Lake using monofilament trammel nets from April to November of 2016. Fish sampling occurred monthly, with nets set and fish caught at four-hour intervals in each month. The results showed that significant diel effects and diel × month interaction were found on Chinese silver carp (SC) and diel × month interaction on common carp (CC). Topmouth, humpback, and Wuchang bream (WB) displayed significantly higher catch per unit effort (CPUE) during twilight or daytime than at night, and no diel × month interactions were detected. For Chinese bighead carp (BC), Mongolian redfin (MR), Japanese grenadier anchovy (JGA), and crucian carp, no diel effect and diel × month interaction were observed. The study suggested that most activities occurring in daytime and at twilight were caused by visual orientation to prey for topmouth and humpback, and by the herbivorous feeding habitat of WB. Food competition between BC and JGA may drive a pronounced temporal partitioning of their diel activity. Overnight gillnet fishing could underestimate the population sizes of herbivores, such as WB, and visually oriented predators, for example, humpback, and might not influence the estimation for BC, JGA, and crucian carp. However, its effects on the stock estimation of SC and CC would vary with months. Notably, future winter investigations into diel catch in this lake could potentially augment the conclusions of the present study. Full article

In contrast to mercury, an extremely toxic element, selenium is an essential micronutrient, which by complexing with mercury can mitigate its toxicity. In this regard, we quantified mercury and selenium concentrations in samples (n = 309) of fish tissues and analyzed the Se:Hg molar ratio and HBVSe as toxicological risk biomarkers. The data indicated that mercury levels in planktivorous fish (0.630 ± 0.202 mg kg⁻¹) and carnivorous fish (1.196 ± 0.513 mg kg⁻¹) were above the Brazilian limits considered safe for daily consumption. The highest selenium concentrations were observed in planktivores (0.272 ± 0.093 mg kg⁻¹) and the lowest in herbivores (0.099 ± 0.092 mg kg⁻¹). Molar ratios greater than one and positive HBVSe values were found in 42% of the fish samples (n = 131). As a result, we found that (i) the trophic level influences the risk of mercury exposure through the intake of fish in the diet; (ii) the approach presented in our study (model II) involves greater rigor concerning intake and exposure via fish consumption, since it considers the antagonistic Se:Hg ratio; and (iii) selenium can attenuate mercury toxicity, but safe thresholds vary depending on the species. Full article

Coral restoration is essential for recovering depleted populations and reef ecological functions. However, its effect on enhancing fish assemblages remains understudied. This study investigated the integration of 3D-printed and natural Staghorn coral (Acropora cervicornis) out-planting to assess their role in enhancing benthic spatial complexity and attracting fish communities. Conducted between 2021 and 2023 at Culebra Island, Puerto Rico, we employed a before-after-control-impact (BACI) design to test four treatments: natural A. cervicornis, 3D-printed corals, mixed stands of 3D-printed and natural corals, and non-restored controls. Fish assemblages were monitored through stationary counts. Results showed that integrating 3D-printed and natural corals enhanced fish assemblages and their ecological functions. Significant temporal changes in fish community structure and biodiversity metrics were observed, influenced by treatment and location. Herbivore abundance and biomass increased over time, especially in live coral and 3D-printed plots. Reefs with higher rugosity exhibited greater Scarid abundance and biomass post-restoration. Piscivore abundance also rose significantly over time, notably at Tampico site. Fishery-targeted species density and biomass increased, particularly in areas with live and 3D-printed coral out-plants. Fish assemblages became more complex and diverse post-restoration, especially at Tampico, which supported greater habitat complexity. Before restoration, fish assemblages showed a disturbed status, with biomass k-dominance curves above abundance curves. Post-out-planting, this trend reversed. Control sites showed no significant changes. The study demonstrates that restoring fast-growing branching corals, alongside 3D-printed structures, leads to rapid increases in abundance and biomass of key fishery species, suggesting its potential role promoting faster ecosystem recovery and enhanced coral demographic performance. Full article

A quantitative literature review of restoration techniques and supporting management strategies used throughout the Caribbean and Western Atlantic from 1998 through 2024 was compiled using references from the Web of Science to highlight those with potential for reef replenishment. From 93 sources listed, 74 publications were relevant and categorized into subtopics based on the most prevalent restoration techniques. Roughly half the studies focused on three general topics: the benefits of restoring Acropora species, studies utilizing micro-fragmentation and fragment nurseries, and outplanting techniques. Other subtopics, each with at least three references, included optimizing substrates and artificial reefs, enhancing larval recruitment, emphasizing the role of herbivory, improving management practices, and addressing the impacts of tourism and community engagement. The information from the references was compiled to determine the overlap among categories and the ways in which techniques and management strategies might be applied simultaneously to enhance restoration outcomes. Additionally, sources were analyzed according to time and location of publication to better visualize the emergence of this area of research and restoration efforts. An increase in publications was observed from 2014 to 2024, associated with the rise in major events impacting coral reefs. The major locations for published research were the Florida reef tract and Puerto Rico, though restoration studies were also reported from the Bahamas and sites around the Caribbean. Criteria to assess the success of techniques included coral survival, recruitment, coral coverage, habitat structure and complexity, and biomass of marine life, including fish and invertebrates that inhabited a restored reef. Most restoration efforts utilized either fragmentation or assisted sexual breeding, followed by cultivation in nurseries or labs. Outplanting success depended on fragment size, attachment style, and site selection, with less-intrusive techniques and intermediate planting densities promoting survival. Tools like GAO maps can guide site selection based on herbivore presence and algal coverage. Monitoring is critical to ensuring coral survival, especially after the first year of outplanting, while community involvement can foster public engagement in reef conservation. Full article

Global coral reef ecosystems face various levels of disturbance pressure. Understanding the depth-structured variation in coral reef fish communities can help us to better grasp and predict the adaptive changes of the ecosystem under different stressors. This study applied eDNA metabarcoding technology to analyze the spatial distribution of the coral reef fish at various depths (0 m, 5 m, 10 m, 15 m, 20 m, 30 m, 40 m, 50 m, and 60 m) within the Xisha Islands of China. The results indicated that the eDNA technology detected a total of 213 amplicon sequence variants (ASVs), including 33 species that were not identified using traditional methods. Herbivorous fish generally dominated in relative abundance across different depths. Moreover, the similarity among depth groups was largely absent, and significant differences existed in fish assemblages across depth gradients, consistent with the unique depth preferences of fish microhabitats. Importantly, our findings revealed distinct depth-structured variation among different functional groups of coral reef fish. Large carnivorous fish initially increased and then decreased along the depth gradient from 0 to 60 m, with a turning point around 20 m, while large herbivorous fish displayed the opposite trend. Small carnivorous and small herbivorous fish consistently declined along the same depth gradient. Additionally, the Margalef index (D) and Function richness (FRic) both displayed a consistent downward trend with increasing depth, while the Shannon–Wiener index (H′), Pielou index (J′), Quadratic entropy (RaoQ), Functional dispersion (FDis), and Functional evenness (FEve) initially increased and then decreased, peaking around 20 m. This study revealed that eDNA metabarcoding is an effective tool for evaluating coral reef fish biodiversity, community composition, and spatial distribution. It enhances our understanding of distribution dynamics and offers valuable insights for coral reef conservation and restoration efforts. Full article

This study provides a comprehensive database of sulfur isotope values from Greece, including samples of C3 and C4 plants and terrestrial and aquatic animal bones. This comprehensive analytical approach examines sulfur isotopes—along with carbon and nitrogen—in modern plants, terrestrial mammals, and fish bones (fresh and marine reservoirs) from Greece. The results show a clear offset in δ³⁴S values between terrestrial and aquatic animals, influenced by their dietary sources from marine or freshwater environments. This δ³⁴S offset and the clear difference between S-C-N isotopes permits the reconstruction of the dietary habits of domesticated herbivores and demonstrates differences in husbandry practices and animal movements. Additionally, the combination of sulfur and nitrogen values allows the reconstruction of the diet of omnivores, revealing the type of protein consumed. Finally, this isotopic dataset will provide an essential backbone for future archaeological, ecological, and forensic studies. Full article

Coral reef and their ecological services of food production and shoreline protection are threatened by unsustainable use. To better understand their status, multiple approaches to estimating fisheries sustainability were compared, namely fisheries-independent stock biomass and recovery rates, fisheries-dependent landed catches, balanced harvest and gear use metrics, and fish length measurements. A community biomass recovery was established over a 45-year no-fishing stock recovery time series from seven fisheries reserves and compared to catch- and length-based estimates of sustainability. The logistic production rates (r = 0.09 ± 0.06 95% confidence interval (CI)) and maximum equilibrium total biomass (~150 ± 30 tons/km²) indicated a broad range of potential maximum sustainable yields, with a likely range of 1.1 to 3.9 (95% CI; mean = 3.8) tons/km²/year. In contrast, the mean annual linear biomass growth rates in reserves were lower but less variable than logistic surplus production estimates, ranging from 2.1 to 3.5 (mean = 2.8 tons/km²/year). Realized catches at landing sites were lower still, ranging from 1.43 to 1.52 (mean = 1.48 ± 0.2 tons/km²/y). Differences between production estimates and capture were largely attributable to changes in taxonomic composition and an imbalance in the estimated proportionality of production potential versus actual capture rates. Lost potential capture was likely due to differences in the vulnerability of taxa to fishing and a lack of compensatory increased production among fishing-resistant taxa. Large proportional losses of catch were measured among snappers, unicorn fish, sweetlips, goatfish, and soldierfish, while smaller proportional gains in the catch samples were found among resident herbivorous rabbitfish, parrotfish, and groupers. Many of these declining taxa have vulnerable schooling life histories that are likely to require special habitat and reserve characteristics. Evaluations of sustainability from length measurements found 17 or 7% of total and 12% of caught species had sample sizes minimally sufficient for evaluation (>30 individuals from 413 catches, 2284 captured individuals composed of 144 species) of length and spawning metrics of sustainability. Seven of these species met length-based and three met spawning potential ratio thresholds for sustainability. Consequently, length-based evaluations had poor species coverage and therefore we were unable to evaluate the sustainability of the larger fish community. Recommendations for future research include a better understanding of the consequences of variability in spillover and proportionality of production potential for sustainability. Management recommendations are to focus management on the recovery of species abundant in unfished locations but not contributing to fisheries yield. Full article

Microplastics (MPs), defined as plastic particles smaller than 5 mm, have emerged as a global environmental and public health crisis, infiltrating air, water, soil, and food systems worldwide. MPs originate from the breakdown of larger plastic debris, single-use plastics, and industrial processes, entering food. Emerging evidence underscores the ability of MPs to cross biological barriers, including the blood–brain barrier, triggering neuroinflammatory responses and contributing to neurodegenerative diseases such as Alzheimer’s and Parkinson’s. Polystyrene (PS), a common type of MP, activates microglial cells, releasing pro-inflammatory cytokines like tumor necrosis factor (TNF-α) and interleukins, which increase neuronal damage. MPs have also been linked to cardiovascular diseases, with studies detecting polyethylene (PE) and polyvinyl chloride (PVC) in carotid artery plaques, increasing the risk of myocardial infarction and stroke. Furthermore, MPs disrupt endocrine function, alter lipid metabolism, and induce gut microbiome imbalances, posing multifaceted health risks. In the MENA region, MP pollution is particularly severe, with the Mediterranean Sea receiving an estimated 570,000 tons of plastic annually, equivalent to 33,800 plastic bottles per minute. Studies in Egypt, Lebanon, and Tunisia document high MP concentrations in marine ecosystems, with herbivorous fish like Siganus rivulatus containing over 1000 MPs per individual due to the ingestion of contaminated seaweed. Despite these findings, public awareness and regulatory frameworks remain inadequate, with only 24% of Egyptians demonstrating sufficient knowledge of safe plastic use. This review emphasizes the urgent need for region-specific research, policy interventions, and public awareness campaigns to address MP pollution. Recommendations include sustainable waste management practices, the promotion of biodegradable alternatives, and enhanced monitoring systems to mitigate the health and environmental impacts of MPs in the MENA region. Full article

Rice–fish culture, an ancient agronomic practice, integrates aquaculture with rice farming, a sustainable solution for enhancing food security and agricultural productivity. The recent advancements and historical perspectives on rice–fish culture have increased its ecological, economic, and social impacts. The practice spans over 2000 years and has seen significant technological improvements, especially in regions like China, Thailand, and Bangladesh. Implementations of modernized rice–fish systems demonstrate increased rice yields, reduced pest and weed prevalence, improvements in soil quality, and higher profits for farmers. For example, in China, it was reported that a rice–fishing system produced 6000–7000 kg of rice and 1500–7500 kg of fish per hectare per year. Furthermore, the fish reduce herbivore insect abundance and weed abundance, effectively eliminating the need for pesticides. Despite its advantages, challenges such as water management, the availability of quality fish seed, and socio-economic barriers remain. By synthesizing findings from various studies, we will highlight the potential of rice–fish culture to contribute to sustainable agriculture and rural development, recommending strategies for optimizing its adoption and addressing existing constraints. Full article

Submerged macrophytes are essential for the restoration of shallow lakes for maintaining clear-water conditions. The presence of fish can affect the nutrient cycles and the growth of submerged macrophytes in lakes. In this study, a 28-day mesocosm experiment was carried out with an herbivorous fish Ctenopharyngodon idella (CID) and an omni-benthivorous fish Carassius auratus (CAU) to investigate their effects on the growth of a submerged macrophyte Hydrilla verticillata and phosphorus (P) cycle in shallow lakes. The results showed that CID slowed down the growth of H. verticillata while CAU showed no significant effect. In overlying water, CID only increased the ammonium nitrogen (NH₃-N) concentration in the later stage due to excretion, while CAU elevated particulate phosphorus (PP) levels during the experiment through disturbance. Meanwhile, the radial oxygen loss and photosynthesis of H. verticillata in CAU might promote the formation of NaOH-P and HCl-P in the sediment, respectively. Changes in the water and sediment properties caused by CID and CAU can contribute to the increase in the eutrophication risk index (ERI). Our findings suggest that CID has the potential to be an indirect biological manipulation tool, while CAU should be controlled to minimize its negative impacts on the P cycle in lakes. Full article

Lake ecosystems are impacted by anthropogenic disturbances and have become vulnerable worldwide. Highly disturbed lake ecosystems are not well understood due to the lack of data on changes in the structures and functions of ecosystems. In this paper, we focus on Lake Baiyangdian (BYDL), the largest shallow lake in North China. Following the establishment of the Xiong’an New Area (XNA) in 2017, concerted efforts to restore BYDL’s aquatic environment have been undertaken, which has led to significant changes in the structures and functions of the ecosystems. We evaluated the biomass dynamics of main biological communities and detected the regime shifts of environmental factors in BYDL from 2016 to 2023. Further, we constructed a food web model for the BYDL ecosystem in 2023 by using Ecopath with Ecosim (EwE) and made a comparison with the reported results in 2018. The results showed significant changes in the ecosystem structure of BYDL over the last 6 years. In 2023, the submerged macrophytes biomass in the system increased by 4.2 times compared to 2018, leading to an increase in total system throughput. We found that BYDL changed from an algal-type lake to a macrophyte-dominated lake. In addition, we found TN, NH₄⁺-N, and COD_Mn were significantly decreased in BYDL during the restoration. TN and NH₄⁺-N had a change point in approximately 2021, indicating that a regime shift had occurred during restoration. Overall, the BYDL ecosystem was in an immature but developing state, as indicated by ecological network analysis indicators. Nutrient-loading reduction, hydrological regulation, and rational biomanipulation may be the potential driving factors of change in the BYDL ecosystem. We strongly recommend the timely harvesting of submerged macrophytes, the proliferation and release of herbivorous fishes, and the assessment of the ecological capacity of carnivorous fishes in the future ecological restoration of BYDL. Full article