Sign in to use this feature.

Years

Between: -

Subjects

remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline

Journals

remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline

Article Types

Countries / Regions

remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline

Search Results (669)

Search Parameters:
Keywords = methanogens

Order results
Result details
Results per page
Select all
Export citation of selected articles as:
18 pages, 1059 KB  
Article
Rapid Biocathode Start-Up with Mixed Methanogenic–Electroactive Inocula for Enhanced Bioelectrochemical Performance
by Tamara Joglar, Andrea Crespo-Barreiro, Mercedes Jiménez-Rosado and Raúl Mateos
Appl. Sci. 2025, 15(19), 10601; https://doi.org/10.3390/app151910601 - 30 Sep 2025
Abstract
This study explores the use of a pre-acclimated Geobacter-enriched inoculum as a novel strategy to accelerate the start-up of biocathodes. Unlike conventional inoculation with broad-spectrum communities, the proposed inoculum combines a long-term electroactive consortium, previously adapted to anaerobic bioelectrochemical conditions, with digestate [...] Read more.
This study explores the use of a pre-acclimated Geobacter-enriched inoculum as a novel strategy to accelerate the start-up of biocathodes. Unlike conventional inoculation with broad-spectrum communities, the proposed inoculum combines a long-term electroactive consortium, previously adapted to anaerobic bioelectrochemical conditions, with digestate produced under controlled laboratory conditions. This prior acclimation ensures the presence of Geobacter strains already conditioned to electrode-associated growth, promoting rapid colonization and early electrochemical activity. Experiments were conducted in a dual-chamber electrochemical cell equipped with a three-electrode setup polarized at −1 V vs. Ag/AgCl. The enriched biocathode reached current densities exceeding 1.4 A/m2 within 24 h, whereas the control exhibited significantly lower, less stable, and inconsistent performance. Unlike previously reported approaches based on broad-spectrum co-inoculation, this work presents a tailor-made inoculum in which the electroactive community is not only dominated by Geobacter, but also selectively preconditioned under functional bioelectrochemical conditions. This prior adaptation is a key differentiator that markedly enhances start-up efficiency. The results demonstrate that strategic enrichment with pre-acclimated Geobacter significantly accelerates start-up and improves electrochemical performance, offering a promising pathway toward more efficient and scalable bioelectrochemical systems for wastewater treatment and renewable energy generation. Full article
(This article belongs to the Section Energy Science and Technology)
15 pages, 1631 KB  
Article
Towards Sustainable Biogas Production: Valorizing Dairy Waste Through Green Thermo-Oxidative Pretreatment
by Bani Kheiredine, Kerroum Derbal, Maissa Talhi, Randa Touil, Meriem Zamouche, Sabrina Lekmine, Mohammad Shamsul Ola, Jie Zhang, Abdeltif Amrane and Hichem Tahraoui
Water 2025, 17(19), 2844; https://doi.org/10.3390/w17192844 - 29 Sep 2025
Abstract
This study was conducted to investigate the effect of hydrogen peroxide (H2O2) pretreatment on the anaerobic digestion performance of dairy wastewater. Initial physicochemical characterization revealed that the substrate is highly enriched in volatile solids (approximately 90.67%), indicating its strong [...] Read more.
This study was conducted to investigate the effect of hydrogen peroxide (H2O2) pretreatment on the anaerobic digestion performance of dairy wastewater. Initial physicochemical characterization revealed that the substrate is highly enriched in volatile solids (approximately 90.67%), indicating its strong potential for anaerobic biodegradation. Given this favorable composition, biochemical methane potential (BMP) assays were performed under mesophilic conditions (37 °C) to quantify biogas and methane generation from the untreated and pretreated dairy effluent. To enhance substrate biodegradability and increase methane yield, an oxidative pretreatment using various doses of H2O2 was applied. This pretreatment aimed to disrupt the complex organic matter and promote the solubilization of chemical oxygen demand (COD), especially in its soluble form (sCOD), which is more readily assimilated by methanogenic microorganisms. The experimental results demonstrated a significant improvement in biogas production efficiency. While the untreated sample yielded approximately 100 mL CH4/g VS, the pretreated substrate achieved a maximum of 168 mL CH4/g VS, marking a substantial enhancement. Gas composition analysis further revealed that methane accounted for nearly 45% of the total biogas produced under optimal conditions. The dosage of 0.2 g H2O2 per g of volatile solids (VS) resulted in the highest improvement in methane production after thermal treatment C1, followed by 1.35 g H2O2/g VS, and then 0.5 g H2O2/g VS. Furthermore, the kinetics of methane production were assessed by fitting the experimental data to the modified Gompertz model. This model enabled the determination of key parameters, such as the maximum specific methane production rate and the duration of the lag phase. The high coefficient of determination (R2) values obtained confirmed the excellent agreement between the experimental data and the model predictions, highlighting the robustness and reliability of the modified Gompertz model in describing the anaerobic digestion process of dairy waste subjected to oxidative pretreatment. Full article
Show Figures

Figure 1

23 pages, 1473 KB  
Article
Optimized Biogas Yield and Safe Digestate Valorization Through Intensified Anaerobic Digestion of Invasive Plant Biomass
by Zaineb Dhaouefi, Salma Taktek, François Bélanger, Pauline Fortin, Julie Charbonneau, Sébastien Lange and Habib Horchani
Energies 2025, 18(19), 5151; https://doi.org/10.3390/en18195151 - 28 Sep 2025
Abstract
Anaerobic digestion (AD) is an environmentally sustainable approach for managing invasive plants species, mitigating pollution, and generating renewable energy. However, the complex structure of these biomasses limits their biodegradability and necessitates pretreatment to enhance methane production. This study explored the biotransformation of two [...] Read more.
Anaerobic digestion (AD) is an environmentally sustainable approach for managing invasive plants species, mitigating pollution, and generating renewable energy. However, the complex structure of these biomasses limits their biodegradability and necessitates pretreatment to enhance methane production. This study explored the biotransformation of two invasive species, Reynoutria japonica and Phragmites australis, harvested across diverse phenological stages. Bioprocess intensification was achieved through a single-stage process using a hydrolytic–methanogenic consortium under thermophilic conditions (55 °C, 25 days). The impact of harvest timing distinct plant fractions (shoot vs. root) on biogas production was meticulously evaluated. Results revealed progressive biogas production. Notably, winter-harvested shoot fractions exhibited the highest methane-rich biogas, achieving 551.12 ± 33.07 mL/g VS for Reynoutria and 401.42 ± 24.09 mL/g VS for Phragmites. The resulting digestate demonstrates a rich composition of essential macronutrients (N-P-K) vital for plant growth, highlighting its potential as a valuable biofertilizer. Significantly, complete inhibition of seed germination was observed, confirming the process’s efficacy in preventing the further propagation of invasive species. This research underscores that thermophilic anaerobic digestion, coupled with hydrolytic treatment, is a significant advancement in the valorization of invasive biomasses, contributing to both renewable energy production and ecological recovery. Full article
Show Figures

Figure 1

20 pages, 5625 KB  
Article
Dynamic Changes in Microbial Communities in Oil Reservoirs Under a Long-Term Bio-Chemical Flooding Operation
by Gui-Na Qi, Guo-Jun Li, Yi-Fan Liu, Lei Zhou, Ya-Qing Ge, Jin-Feng Liu, Shi-Zhong Yang, Ji-Dong Gu and Bo-Zhong Mu
Microorganisms 2025, 13(10), 2246; https://doi.org/10.3390/microorganisms13102246 - 25 Sep 2025
Abstract
Huge amounts of water and chemicals have been injected into subsurface oil reservoirs in secondary and tertiary oil recovery processes. Although the effects of injected water and chemicals on microbial communities have been investigated, knowledge about their long-term dynamic changes in oil reservoirs [...] Read more.
Huge amounts of water and chemicals have been injected into subsurface oil reservoirs in secondary and tertiary oil recovery processes. Although the effects of injected water and chemicals on microbial communities have been investigated, knowledge about their long-term dynamic changes in oil reservoirs remains limited. To address this gap, we used 16S rRNA sequencing from cDNA and chemical analysis to track the dynamic changes in microbial communities in oil reservoirs under a long-term flooding operation over three years and five months using bio-chemical flooding in the Daqing Oilfield, China. Researchers observed dynamic changes in microbial composition and diversity during the flooding process. Long-term bio-chemical drainage leads to alterations in dominant bacterial community structure, with a decrease in methanogenic archaeal abundance. Bacterial metabolic functions remained stable, but archaeal functions changed notably. Our results indicate that the microbial community and its functions in the oil reservoirs have experienced significant dynamic changes under the long-term flooding intervention of bio-chemical flooding, which opens up a new window for further understanding the impact of injected water and chemicals on microbial community in oil reservoirs and expands our knowledge about the role of microbial community changes in reservoirs under the flooding process. Full article
(This article belongs to the Section Environmental Microbiology)
Show Figures

Graphical abstract

20 pages, 1807 KB  
Article
Biochar Enhanced Anaerobic Digestion of Chicken Manure by Mitigating Ammonium Inhibition and Improving Methane Production
by Jiaoning Zhu, Qiyuzhou Meng, Xiaoyuan Zhang, Xiaochen Zhang, Yun Tang and Yongping Li
Fermentation 2025, 11(10), 549; https://doi.org/10.3390/fermentation11100549 - 23 Sep 2025
Viewed by 151
Abstract
Anaerobic digestion (AD) is a mature industrial fermentation technology for converting organic matter into renewable bioenergy, and chicken manure (CM) is a promising feedstock due to its high organic content. However, the industrial-scale AD of CM is often hindered by ammonium inhibition, particularly [...] Read more.
Anaerobic digestion (AD) is a mature industrial fermentation technology for converting organic matter into renewable bioenergy, and chicken manure (CM) is a promising feedstock due to its high organic content. However, the industrial-scale AD of CM is often hindered by ammonium inhibition, particularly under high organic loading rates (OLRs). Biochar has emerged as a sustainable additive that can enhance microbial activity, buffer pH, and improve system stability. In this study, the effects of biochar on the methane production and fermentation performance of CM in terms of AD were evaluated under both batch and continuous conditions, where batch experiments were conducted at different biochar-to-CM ratios. Ammonium nitrogen and methane production were monitored to determine the optimal biochar addition ratio. Continuous stirred-tank reactors (CSTRs) were then operated with the optimal biochar addition ratio under stepwise-increasing OLR conditions to assess methane production, fermentation parameters, and methanogen community composition. The results showed that an optimal biochar addition of 9% reduced total ammonium nitrogen (TAN) by 31.75% and increased cumulative methane production by 25.93% compared with the control. In continuous operation, biochar addition mitigated ammonium inhibition, stabilized pH, enhanced system stability and organic loading capacity, and improved methane production by 21.15%, 27.78%, and 83.33% at OLRs of 2.37, 4.74, and 7.11 g volatile solids (VS)/(L·d), respectively, compared to the control. Biochar also inhibited the growth of methylotrophic methanogen of RumEn_M2. These findings provide scientific and technical support for applying biochar as a process enhancer during the AD of CM. Full article
(This article belongs to the Section Industrial Fermentation)
Show Figures

Figure 1

20 pages, 2165 KB  
Article
Influence of Fluctuating Food Waste Concentrations on Horizontal Anaerobic Reactor Performance and Biogas Output
by Jovale Vincent Tongco, Sang Hyeok Park, Su In Kim and Seokhwan Hwang
Energies 2025, 18(19), 5064; https://doi.org/10.3390/en18195064 - 23 Sep 2025
Viewed by 161
Abstract
Food waste (FW) sourced from treatment facilities is predominantly in solid form, with low water content and high variations in organic content. High organic content in FW is ideal in anaerobic digestion for bioenergy applications, but proper monitoring during start-up operations should be [...] Read more.
Food waste (FW) sourced from treatment facilities is predominantly in solid form, with low water content and high variations in organic content. High organic content in FW is ideal in anaerobic digestion for bioenergy applications, but proper monitoring during start-up operations should be employed to avoid imbalance in the acidogenic/methanogenic population due to volatile fatty acid (VFA) accumulation in the system. The seed inoculum (5 L) in each horizontal anaerobic reactor (HAR) was fed with food waste without effluent flow (filling-up phase) until it reached the final working volume of 10 L (continuous phase). The pH, alkalinity, chemical oxygen demand (COD), VFA, biogas production, methane concentration, and microbial community dynamics were set as stability indicators during reactor operation. The results revealed that introducing fluctuations in FW concentrations does not negatively affect the biogas production (1.7 ± 0.2 L/LR/d) and methane concentration (59.0 ± 2.5%). Acclimatization of the methanogenic and bacterial population was also observed. This study aimed to evaluate the influence of fluctuating FW concentrations on the process performance of horizontal anaerobic reactors, focusing on process stability, microbial dynamics, and biogas output during filling-up and continuous phases. Full article
(This article belongs to the Special Issue Biomass and Bio-Energy—3rd Edition)
Show Figures

Figure 1

21 pages, 1407 KB  
Article
Gas Endeavour Device for the Real-Time In Vitro Measurement of Carbon Dioxide and Methane Emissions Associated with Sheep Diets with Prickly Pear By-Products
by Riccardo Gannuscio, Giuseppe Maniaci and Massimo Todaro
Fermentation 2025, 11(9), 543; https://doi.org/10.3390/fermentation11090543 - 18 Sep 2025
Viewed by 213
Abstract
Prickly pear by-products contain dietary fibre and bioactive components like polyphenols and flavonols, which can reduce total gas and methane emissions. To this end, an in vitro trial was carried out in duplicate utilizing three diets containing hay, concentrate, and two prickly pear [...] Read more.
Prickly pear by-products contain dietary fibre and bioactive components like polyphenols and flavonols, which can reduce total gas and methane emissions. To this end, an in vitro trial was carried out in duplicate utilizing three diets containing hay, concentrate, and two prickly pear by-products obtained after grinding the fruit peel and pastazzo (pulp + peel + seeds), which were ensiled with the addition of 12% wheat bran (raw weight). Based on the ingredient intake recorded in the in vivo study for 12 lactating ewes fed the three diets, an in vitro rumen fermentation study with the innovative Gas Endeavour system (GES) was performed, and the Gage R&R statistical method was used to evaluate the accuracy of the total gas and methane production detected by the GES device. Fermented liquor samples for each diet were used to calculate the disappearance of organic matter and neutral detergent fibre. Shotgun metagenome sequencing analysis was used to evaluate the effect of diet on the rumen fluid microbiota, and it was found that the parameters of repeatability and reproducibility of the total gas and the methane produced after 24 h were satisfactory. Prickly pear by-products display high fermentability for the peel and low fermentability for pastazzo silage, which generates lower total gas and methane emissions. This diminished methane gas production is not correlated with the relative abundance of methanogens. The different chemical and nutritional composition of the three diets altered the rumen bacteria, albeit only slightly, with particular reference to the Succinivibrio and Selenomonas genera. In conclusion, prickly pear peel silage displayed acceptable fermentation traits, which could support its utilization in sheep diets. Full article
Show Figures

Figure 1

19 pages, 1287 KB  
Article
The Assessment of Anaerobic Digestion Performance and Efficiency in Terms of Waste Collection
by Przemysław Seruga, Marta Wilk, Edmund Cibis, Agnieszka Urbanowska and Łukasz Niedźwiecki
Energies 2025, 18(18), 4876; https://doi.org/10.3390/en18184876 - 13 Sep 2025
Viewed by 272
Abstract
Municipal solid waste (MSW) management is identified as a significant sustainability concern. Source segregation (SS) is the most effective method of managing MSW, and anaerobic digestion (AD) is the most efficient treatment method. The aim of this study was to analyze the impact [...] Read more.
Municipal solid waste (MSW) management is identified as a significant sustainability concern. Source segregation (SS) is the most effective method of managing MSW, and anaerobic digestion (AD) is the most efficient treatment method. The aim of this study was to analyze the impact of waste collection rules on the efficiency and performance of AD. The potential biomethane yields for SS-kitchen waste and SS-biowaste were calculated, determined in laboratory tests, and verified full-scale. The content of the organic fraction in SS-biowaste reached about 81 to 86%; however, regarding SS-kitchen waste, it reached almost 92%. The primary contaminants were plastics. The obtained biogas yield was slightly higher for SS-kitchen waste (136.2 m3/ton), compared to SS-biowaste (116.6 m3/ton). The pH values, acidity, and alkalinity indicated no risk of exploitation using both feedstocks. However, in the case of SS-kitchen waste, the acetic acid content was about 2.5 times higher than that of SS-biowaste. Furthermore, the acetic acid was noted in the outlet section (about 140–160 mg/kg), indicating no complete organic matter decomposition. Regarding SS-kitchen waste, the calculated methane yield reached 137.1 m3CH4/ton and laboratory tests showed a methanogenic potential of 129.7 m3CH4/ton, while at full-scale, it reached about 82.2 m3CH4/ton. The research confirmed that the SS of biowaste positively impacts MSW management by improving waste composition and increasing recycling possibilities. AD is an effective biowaste treatment process, allowing energy recovery from waste. Full article
(This article belongs to the Special Issue Biomass and Waste Valorization for Biofuel and Bioproducts Production)
Show Figures

Figure 1

24 pages, 20388 KB  
Article
Distribution and Environmental Implications of GDGTs in Sediments from Three Asian Mangrove Wetlands
by Qiunan Li, Yasong Wang, Xinxin Li, Mohammad Abdul Baki, Shilpi Saha, Jiaodi Zhou and Yunping Xu
Water 2025, 17(18), 2677; https://doi.org/10.3390/w17182677 - 10 Sep 2025
Viewed by 381
Abstract
Glycerol Dialkyl Glycerol Tetraethers (GDGTs) are microbial membrane lipids that can provide crucial information for identifying organic carbon sources and understanding paleoenvironments. Despite numerous studies reporting the presence of GDGTs in various terrestrial and marine environments, there is a paucity of reports concerning [...] Read more.
Glycerol Dialkyl Glycerol Tetraethers (GDGTs) are microbial membrane lipids that can provide crucial information for identifying organic carbon sources and understanding paleoenvironments. Despite numerous studies reporting the presence of GDGTs in various terrestrial and marine environments, there is a paucity of reports concerning GDGTs in mangrove wetlands that are characterized by unique hydrological conditions and disproportionately high accumulation rates of blue carbon (i.e., carbon sequestered in coastal ecosystems, where tidal flooding and anaerobic sediments facilitate exceptional long-term carbon storage). This study investigates GDGTs in 81 sediment samples from 5 sediment cores collected from three Asian mangrove wetlands in Bangladesh, Hong Kong, and Guangxi Province, China. The Hong Kong mangrove sediments had the highest GDGT concentration (370.18 ± 58.00 ng·g−1 dws), followed by Bangladesh mangrove sediments (136.70 ± 41.70 ng·g−1 dws), while Guangxi mangrove sediments had the lowest (100.80 ± 28.71 ng·g−1 dws). All samples demonstrated high BIT index values (>0.8), low IIIa/IIa index values (0.09–0.19) and the predominance of tetramethylated brGDGTs (70.38 ± 2.21%), indicating that terrestrial inputs are the primary source of organic carbon. Despite overall low methylation index (MI) values (0.15–0.35) and GDGT-0/Cren ratios, deeper sediment samples in the lower part of HK exhibited GDGT-0/Cren > 2, likely reflecting enhanced contributions of methanogenic archaea under distinct redox conditions compared to upper sediments. This in situ production may complicate the application of GDGT-based paleo-proxies, as indicated by the substantial deviations between CBT’-pH (MBT’5ME-temperature) and measured pH (instrumental temperature). The dominant bacterial phyla in the mangrove sediments of Guangxi and Bangladesh were Proteobacteria, Actinobacteriota, Chloroflexi, Acidobacteriota, and Firmicutes (>70% relative abundance). However, correlations between microbial community compositions and brGDGT isomers are different among sampling sites. Our study emphasizes that site- and depth-specific microbial activity may significantly contribute to organic matter cycling and the in situ production of GDGTs in mangrove sediments. These factors should be taken into account for organic carbon sequestration and the validity of GDGT-based paleo-proxies in mangrove wetlands. Full article
(This article belongs to the Section Ecohydrology)
Show Figures

Figure 1

20 pages, 2868 KB  
Article
Research on Algae Enhancing Biogenic Methane Production from Coal
by Liu Zhu, Wangjie Diao, Yi Liu, Peilin Zhu and Chenyao Gong
Sustainability 2025, 17(17), 7960; https://doi.org/10.3390/su17177960 - 3 Sep 2025
Viewed by 689
Abstract
The low efficiency of the microbial gasification of coal limits the application of bio-coal bed methane technology. The co-fermentation of coal and biomass provides a new approach for improving the degradation rate of coal. In this study, a co-fermentation system comprising five different [...] Read more.
The low efficiency of the microbial gasification of coal limits the application of bio-coal bed methane technology. The co-fermentation of coal and biomass provides a new approach for improving the degradation rate of coal. In this study, a co-fermentation system comprising five different coal orders with five microalgae was constructed in the laboratory, and the methanogenic characteristics of coal–algae co-fermentation and its microbiological mechanism were systematically investigated in terms of gas production, soluble organic matter, and microbial community characteristics. The results showed that the combination of lignite and Nannochloropsis exhibited optimal methane production, with a methane yield of 26.43 mL/g coal. Biogenic methane yields for lignite–Porphyra and anthracite–Porphyra were 23.43 mL and 21.28 mL, respectively, demonstrating the potential for algae to enhance gas production even in high-rank coals. pH monitoring revealed that algal species played a critical role in the acidification process. Dunaliella caused a continuous pH decrease, reaching 3.76 by day 30, while Nannochloropsis maintained a neutral pH of 6.95, optimizing the fermentation environment. Significant differences in soluble organic matter were observed between the lignite and anthracite fermentation systems, with lignite systems producing more volatile fatty acids, including acetic and butyric acids. Microbial community analysis revealed that Methanosarcina, an acetic acid-utilizing methanogen, was dominant in lignite and anthracite systems, while Syntrophomonas played a key role in lignite–Nannochloropsis co-fermentation. These findings provide valuable insights into optimizing coal microbial gasification and selecting appropriate algal species to enhance methane production efficiency. Full article
Show Figures

Figure 1

16 pages, 12297 KB  
Article
Monensin Degradation and Methane Production from Sugarcane Vinasse in Two-Phase Thermophilic Anaerobic Fixed-Bed and Sludge Blanket Bioreactors
by Sami Chatila and Marcelo Zaiat
Fermentation 2025, 11(9), 518; https://doi.org/10.3390/fermentation11090518 - 3 Sep 2025
Viewed by 1122
Abstract
Sugarcane vinasse, a byproduct of ethanol production, presents environmental challenges due to its high organic content and occasional contamination with antibiotics, such as monensin. This study successfully evaluated thermophilic two-phase anaerobic digestion for simultaneous monensin degradation and biogas production. The system, consisting of [...] Read more.
Sugarcane vinasse, a byproduct of ethanol production, presents environmental challenges due to its high organic content and occasional contamination with antibiotics, such as monensin. This study successfully evaluated thermophilic two-phase anaerobic digestion for simultaneous monensin degradation and biogas production. The system, consisting of an acidogenic anaerobic structured-bed bioreactor (ASTBR) operating at with a hydraulic retention time (HRT) of 7.5 h followed by a methanogenic reactor at HRT = 24 h, with two options of the methanogenic phase, an upflow anaerobic sludge blanket (UASB), and an ASTBR, operated continuously for 254 days with incremental monensin concentrations (0–2000 ng·mL−1). The acidogenic reactor consistently removed over 70% of monensin across all phases, demonstrating its effectiveness as a pretreatment step. At realistic residual concentrations (20–100 ng·mL−1), monensin not only failed to inhibit biogas production but enhanced methane yield by up to 100% through selective pressure on the microbial community. This study demonstrated that anaerobic digestion can effectively degrade monensin while increasing the value of vinasse, providing a scalable solution for mitigating antibiotic contamination and enhancing bioenergy recovery in the sugarcane–ethanol industry. Full article
(This article belongs to the Section Industrial Fermentation)
Show Figures

Figure 1

19 pages, 733 KB  
Review
Methane, Bacteria, Fungi, and Fermentation: Pathophysiology, Diagnosis and Treatment Strategies for Small Intestinal Bacterial Overgrowth, Intestinal Methanogen Overgrowth and Small Intestinal Fungal Overgrowth
by Adam Wawrzeńczyk, Marta Czarnowska, Samira Darwish, Aleksandra Ćwirko-Godycka, Kinga Lis, Maciej Szota, Paweł Treichel, Aleksandra Wojtkiewicz and Katarzyna Napiórkowska-Baran
Curr. Issues Mol. Biol. 2025, 47(9), 713; https://doi.org/10.3390/cimb47090713 - 2 Sep 2025
Viewed by 1328
Abstract
The human gastrointestinal tract hosts a complex ecosystem known as the gut microbiota, which plays a crucial part in digestion and immune system function. Among the clinically recognized manifestations of dysbiosis in this system are Small Intestinal Bacterial Overgrowth (SIBO), Intestinal Methanogen Overgrowth [...] Read more.
The human gastrointestinal tract hosts a complex ecosystem known as the gut microbiota, which plays a crucial part in digestion and immune system function. Among the clinically recognized manifestations of dysbiosis in this system are Small Intestinal Bacterial Overgrowth (SIBO), Intestinal Methanogen Overgrowth (IMO), Small Intestinal Fungal Overgrowth (SIFO), and Large Intestinal Bacterial Overgrowth (LIBO). This study aims to investigate the complex pathophysiological mechanisms underlying these syndromes and their diagnostics and therapeutic options, focusing primarily on the roles of methane-producing archaea and fungal overgrowth. The methods employed in this study involve a comprehensive analysis and synthesis of peer-reviewed articles, systematic reviews, clinical trials, and meta-analyses. This review summarizes that methane production by Methanobrevibacter smithii was linked to altered fermentation, reduced microbial diversity, and slowed intestinal transit. Fungal species were associated with increased intestinal permeability, inflammation, and biofilm formation. Targeted interventions addressing microbial imbalances demonstrated potential therapeutic value. This review highlights the complex and multifactorial nature of gut dysbiosis, revealing its impact beyond the gastrointestinal tract. While emerging therapies targeting methanogens, fungi, and biofilms show promise, further research is essential to optimize their clinical application. The findings emphasize the need for interdisciplinary collaboration to refine diagnostic and therapeutic strategies. Full article
(This article belongs to the Special Issue Latest Review Papers in Molecular Biology 2025)
Show Figures

Figure 1

32 pages, 2165 KB  
Review
Biogeochemical Interactions and Their Role in European Underground Hydrogen Storage
by Frank E. Viveros, Na Liu and Martin A. Fernø
Minerals 2025, 15(9), 929; https://doi.org/10.3390/min15090929 - 1 Sep 2025
Viewed by 703
Abstract
Integrating renewable energy requires robust, large-scale storage solutions to balance intermittent supply. Underground hydrogen storage (UHS) in geological formations, such as salt caverns, depleted hydrocarbon reservoirs, or aquifers, offers a promising way to store large volumes of energy for seasonal periods. This review [...] Read more.
Integrating renewable energy requires robust, large-scale storage solutions to balance intermittent supply. Underground hydrogen storage (UHS) in geological formations, such as salt caverns, depleted hydrocarbon reservoirs, or aquifers, offers a promising way to store large volumes of energy for seasonal periods. This review focuses on the biological aspects of UHS, examining the biogeochemical interactions between H2, reservoir minerals, and key hydrogenotrophic microorganisms such as sulfate-reducing bacteria, methanogens, acetogens, and iron-reducing bacteria within the gas–liquid–rock–microorganism system. These microbial groups use H2 as an electron donor, triggering biogeochemical reactions that can affect storage efficiency through gas loss and mineral dissolution–precipitation cycles. This review discusses their metabolic pathways and the geochemical interactions driven by microbial byproducts such as H2S, CH4, acetate, and Fe2+ and considers biofilm formation by microbial consortia, which can further change the petrophysical reservoir properties. In addition, the review maps 76 ongoing European projects focused on UHS, showing 71% target salt caverns, 22% depleted hydrocarbon reservoirs, and 7% aquifers, with emphasis on potential biogeochemical interactions. It also identifies key knowledge gaps, including the lack of in situ kinetic data, limited field-scale monitoring of microbial activity, and insufficient understanding of mineral–microbe interactions that may affect gas purity. Finally, the review highlights the need to study microbial adaptation over time and the influence of mineralogy on tolerance thresholds. By analyzing these processes across different geological settings and integrating findings from European research initiatives, this work evaluates the impact of microbial and geochemical factors on the safety, efficiency, and long-term performance of UHS. Full article
(This article belongs to the Special Issue Mineral Dissolution and Precipitation in Geologic Porous Media)
Show Figures

Figure 1

25 pages, 2237 KB  
Article
How Does Methanogenic Inhibition Affect Large-Scale Waste-to-Energy Anaerobic Digestion Processes? Part 1—Techno-Economic Analysis
by Denisse Estefanía Díaz-Castro, Ever Efraín García-Balandrán, Alonso Albalate-Ramírez, Carlos Escamilla-Alvarado, Sugey Ramona Sinagawa-García, Pasiano Rivas-García and Luis Ramiro Miramontes-Martínez
Fermentation 2025, 11(9), 510; https://doi.org/10.3390/fermentation11090510 - 31 Aug 2025
Viewed by 699
Abstract
This two-part study assesses the impact of biogas inhibition on large-scale waste-to-energy anaerobic digestion (WtE-AD) plants through techno-economic and life cycle assessment approaches. The first part addresses technical and economic aspects. An anaerobic co-digestion system using vegetable waste (FVW) and meat waste (MW) [...] Read more.
This two-part study assesses the impact of biogas inhibition on large-scale waste-to-energy anaerobic digestion (WtE-AD) plants through techno-economic and life cycle assessment approaches. The first part addresses technical and economic aspects. An anaerobic co-digestion system using vegetable waste (FVW) and meat waste (MW) was operated at laboratory scale in a semi-continuous regime with daily feeding to establish a stable process and induce programmed failures causing methanogenic inhibition, achieved by removing MW from the reactor feed and drastically reducing the protein content. Experimental data, combined with bioprocess scale-up models and cost engineering methods, were then used to evaluate the effect of inhibition periods on the profitability of large-scale WtE-AD processes. In the experimental stage, the stable process achieved a yield of 521.5 ± 21 mL CH4 g−1 volatile solids (VS) and a biogas productivity of 0.965 ± 0.04 L L−1 d−1 (volume of biogas generated per reactor volume per day), with no failure risk detected, as indicated by the volatile fatty acids/total alkalinity ratio (VFA/TA, mg VFA L−1/mg L−1) and the VFA/productivity ratio (mg VFA L−1/L L−1 d−1), both recognized as effective early warning indicators. However, during the inhibition period, productivity decreased by 64.26 ± 11.81% due to VFA accumulation and gradual TA loss. With the progressive reintroduction of the FVW:MW management and the addition of fresh inoculum to the reaction medium, productivity recovered to 96.7 ± 1.70% of its pre-inhibition level. In WtE-AD plants processing 60 t d−1 of waste, inhibition events can reduce net present value (NPV) by up to 40.2% (from 0.98 M USD to 0.55 M USD) if occurring once per year. Increasing plant capacity (200 t d−1), combined with higher revenues from waste management fees (99.5 USD t−1) and favorable electricity markets allowing higher selling prices (up to 0.23 USD kWh−1), can enhance resilience and offset inhibition impacts without significantly compromising profitability. These findings provide policymakers and industry stakeholders with key insights into the economic drivers influencing the competitiveness and sustainability of WtE-AD systems. Full article
Show Figures

Figure 1

20 pages, 2741 KB  
Article
Changes in Microbial Communities in Industrial Anaerobic Digestion of Dairy Manure Caused by Caldicellulosiruptor Pretreatment
by Jakob Young, Maliea Nipko, Spencer Butterfield and Zachary Aanderud
BioTech 2025, 14(3), 67; https://doi.org/10.3390/biotech14030067 - 28 Aug 2025
Viewed by 510
Abstract
Extremophilic biological process (EBP) pretreatment increases substrate availability in anaerobic digestion, but the effect on downstream microbial community composition in industrial systems is not characterized. Changes in microbial communities were determined at an industrial facility processing dairy manure in a modified split-stream system [...] Read more.
Extremophilic biological process (EBP) pretreatment increases substrate availability in anaerobic digestion, but the effect on downstream microbial community composition in industrial systems is not characterized. Changes in microbial communities were determined at an industrial facility processing dairy manure in a modified split-stream system with three reactor types: (1) EBP tanks at 70–72 °C; (2) mesophilic Continuously Stirred Tank Reactors (CSTRs); (3) mesophilic Induced Bed Reactors (IBRs) receiving combined CSTR and EBP effluent. All reactors had a two-day hydraulic retention time. Samples were collected weekly for 60 days. pH, volatile fatty acid and bicarbonate concentrations, COD, and methane yield were measured to assess tank environmental conditions. Microbial community compositions were obtained via 16S rRNA gene sequencing. EBP pretreatment increased acetate availability but led to a decline in the relative abundance of acetoclastic Methanosarcina species in downstream IBRs. Rather, syntrophic methanogens, e.g., members of Methanobacteriaceae, increased in relative abundance and became central to microbial co-occurrence networks, particularly in association with hydrogen-producing bacteria. Network analysis also demonstrated that these syntrophic relationships were tightly coordinated in pretreated digestate but absent in the untreated CSTRs. By promoting syntrophic methanogenesis while increasing acetate concentrations, EBP pretreatment requires system configurations that enable acetoclast retention to prevent acetate underutilization and maximize methane yields. Full article
(This article belongs to the Section Industry, Agriculture and Food Biotechnology)
Show Figures

Figure 1

Back to TopTop