Search Results (6,852)

Soil lead (Pb) contamination poses a severe threat to agricultural sustainability and food security. Phytoremediation offers a green alternative for remediation, yet its efficiency is limited by poor plant tolerance and restricted metal uptake. In this study we investigated the functional roles of the microbial inoculants Trichoderma guizhouense NJAU4742 and Bacillus velezensis SQR9 in enhancing the performance of Salix suchowensis P1024 grown in Pb-contaminated soil. NJAU4742 significantly increased plant biomass by 34% (p < 0.05), accompanied by increased soil microbial biomass and higher activities of urease, acid phosphatase, and sucrase. In contrast, SQR9 strongly enhanced Pb accumulation by 19% (p < 0.05), which was accompanied by upregulated antioxidant enzymes, reduced lipid peroxidation, and elevated cysteine levels. Random forest and correlation analyses demonstrated that soil nutrient cycling indices (urease, MBC, sucrase) were key predictors of biomass, whereas antioxidant defenses (POD, CAT) primarily explained Pb accumulation. These findings provide new insights into the distinct contributions of NJAU4742 and SQR9 to willow growth and Pb remediation, and provide a basis for developing more effective microbe-assisted phytoremediation strategies. Full article

Background: The tumor microenvironment offers a new perspective in gynecologic oncology. In ovarian cancer, numerous preclinical studies, especially organoid models, have highlighted cellular, immune, and biochemical mechanisms. Beyond these sophisticated findings, more practical aspects require attention, such as the role of vaginal microbiota, which represents an interplay between external agents and internal genitalia, and its potential profiling role in early detection beyond the promise of microbiota-targeted therapies. Objectives: This review aims to assess whether such a correlation is speculative or scientifically grounded. Methods: A focused literature search was conducted on vaginal microbiota and its correlation with ovarian cancer to define the current state of knowledge. Results: Mixed outcomes have been reported, yet there is a rational and scientific basis supporting further investigation. Clinical approaches increasingly consider vaginal microbiota as relevant. However, we have to say that most available evidence is still preliminary and largely preclinical to set realistic expectations for readers. Although additional studies are needed, emerging insights highlight its importance and practical implications. We present a diagnostic–therapeutic management flowchart summarizing current evidence). Discussion: Most links between the vaginal microbiota and ovarian cancer are correlational rather than causal. The idea that microbes ascend from the vagina to the ovaries is proposed but still definitely not demonstrated. Confounding factors like age, hormones, and BRCA status complicate interpretation, and ovarian cancer itself could secondarily alter the microbiota. Mechanistic studies and longitudinal data are still needed to clarify whether dysbiosis contributes to carcinogenesis or is merely a consequence. As gynecologists, we summarize key aspects and emphasize to colleagues the importance of incorporating these findings into daily clinical practice. Vaginal dysbiosis should be considered not only a local imbalance but also a potential strategy for primary cancer prevention. Conclusions: Future research on the tumor microenvironment and vaginal microbiota will expand scientific knowledge and guide innovative preventive and therapeutic strategies. Full article

Constructed wetlands (CWs) are sustainable and cost-effective systems that utilise plant–microbe interactions and natural processes for wastewater treatment. Microbial communities play a pivotal role in pollutant removal by crucial processes like nitrogen transformations, phosphorus cycling, organic matter degradation and the breakdown of emerging contaminants. Dominant phyla, such as Proteobacteria, Bacteroidetes, Actinobacteria and Firmicutes, collectively orchestrate these biogeochemical functions. Advances in molecular tools, including high-throughput sequencing and metagenomics, have revealed the diversity and functional potential of wetland microbiomes, while environmental factors, i.e., temperature, pH and hydraulic retention time, strongly influence their performance. Phosphorus removal efficiency is often lower than nitrogen, and large land requirements and long start-up times restrict broader application. Microplastic accumulation, the spread of antibiotic resistance genes and greenhouse gas emissions (methane, nitrous oxide) present additional challenges. The possible persistence of pathogenic microbes further complicates system safety. Future research should integrate engineered substrates, biochar amendments, optimised plant–microbe interactions and hybrid CW designs to enhance treatment performance and resilience in the era of climate change. By acknowledging the potential and constraints, CWs can be further developed as next-generation, nature-based solutions for sustainable water management in the years to come. Full article

Industrial microorganisms have a wide range of applications in biomanufacturing, energy production, environmental protectionpharmaceutical development, etc. Synthetic biology has revolutionised the field of industrial microorganisms by designing, constructing and optimising biological systems. The aim of this study is to discuss the key technologies of synthetic biology in industrial microorganisms and their application prospects. Gene editing technology, one of the core tools of synthetic biology, enables researchers to precisely modify microbial genomes to optimise their metabolic pathways or introduce new functions. Metabolic engineering, as an important direction for the application of synthetic biology in industrial microorganisms, enables the efficient synthesis of target products by optimising and reconstructing the metabolic pathways of microorganisms. The development of high-throughput screening and automated platforms has enabled large-scale gene editing and metabolic engineering experiments. The application of synthetic genomics promises to develop microbes with highly customised functions. However, there are still many challenges in this field, and future research still requires interdisciplinary collaboration to drive the application of synthetic biology in industrial microorganisms to new heights. Full article

Soil degradation and poor fertility severely constrain vegetation growth in urban ecosystems, particularly in compacted and nutrient-depleted tree pits. Mulching has emerged as an effective strategy to improve soil quality and regulate soil–microbe–plant interactions, yet the combined use of organic and inorganic mulching in urban landscapes remains underexplored. In this study, a one-year field experiment was conducted to evaluate the effects of four mulching treatments on soil bacterial community diversity and functional potential. Four treatments were applied green waste compost + wood chips (GW), green waste compost + wood chips + volcanic rocks (GWV), green waste compost + wood chips + pebbles (GWP), and a non-mulched control (CK). Organic mulching (GW) effectively reduced bulk density, enhanced cellulase and protease activities, increased bacterial community richness and balance, and enriched microbial genes associated with carbon and nitrogen metabolism, while organic–inorganic mulching further promoted soil nutrition and reshaped bacterial community structure. Soil pH, nitrogen content, and protease activity served as key drivers of bacterial community structure and function. These findings demonstrate that different mulching practices provide distinct ecological advantages, and together highlight the role of mulching in regulating soil–microbe–plant interactions and improving urban tree pit management. Full article

Microorganisms exhibit metabolic versatility, which enables their multifaceted application, including in pollutant detoxification, waste recycling, and environmental restoration. Agricultural processing generates substantial byproducts rich in carbon, nitrogen, and sulfur, which require proper handling to mitigate ecological challenges and reduce carbon footprints. The generation of recalcitrant keratinous biomass and its slow degradation in the environment have prompted technological interventions for sustainable solutions. Fundamentally, chemical, thermal and mechanical processing methods have been utilized in managing keratinous waste. These approaches are not only energy-intensive but also yield low-quality products and exacerbate environmental challenges. Multidimensional research on the microbial-assisted conversion of keratinous waste into valuable products, which aligns with circular economy principles, is underway. The biodegradation of keratinous resources has predominantly employed culturable single microbial strains; however, few studies have recently investigated microbial consortia as a promising strategy. The use of microbial consortia leverages the high cultural stability and complementary metabolic pathways of microbes to achieve excellent keratin biodegradation. Therefore, this study examined the latest advancements in transforming keratinous waste into high-quality protein hydrolysates using microbial strains. It detailed various types of microbial consortia and their roles in the valorization of keratinous biomass, while highlighting some knowledge gaps for future studies. The study also explored the role of ancillary microbial enzymes in facilitating the conversion of keratinous biomass into value-added products. Full article

The restoration of “Heitutan” degraded grasslands on the Qinghai-Tibetan Plateau was hindered by suboptimal grass species mixtures, leading to low vegetation productivity, impaired soil nutrient cycling, and microbial functional degradation. Based on a 22-year controlled field experiment, this study systematically elucidated the regulatory mechanisms of different artificial grass mixtures on vegetation community characteristics, soil physicochemical properties, and bacterial community structure and function. The results demonstrated that mixed-sowing treatments significantly improved soil conditions and enhanced aboveground biomass. The HC treatment (Elymus nutans Griseb. + Poa crymophila Keng ex L. Liu cv. ‘Qinghai’ + Festuca sinensis Keng ex S. L. Lu cv. ‘Qinghai’) achieved aboveground biomass of 1580.0 and 1645.0 g·m⁻², representing 66.14% and 60.91% increases, respectively, compared to the HA monoculture (E. nutans). Concurrently, this treatment increased soil organic matter content by 52.3% and 48.4%, total nitrogen by 59.4% and 69.2%, while reducing electrical conductivity by 48.99% and 51.72%, with optimal pH stabilization (7.34–7.38). These findings confirmed that optimized grass mixtures effectively enhance soil physicochemical properties and carbon–nitrogen retention. Microbiome analysis revealed that the HE treatment (E. nutans + P. crymophila + F. sinensis + Poa poophagorum Bor. + Festuca kryloviana Reverd. cv. ‘Huanhu’) exhibited superior α-diversity indices (OTU, Shannon, Ace, Chao1, Pielou) with increases of 9.36%, 4.20%, 15.0%, 1.76%, and 13.4%, respectively, over HA, accompanied by optimal community evenness (lowest Simpson index). Core bacterial phyla included Pseudomonadota (22.7–29.9%), Acidobacteriota (21.5–23.6%), and Actinomycetota (13.6–16.0%), with significant suppression of pathogenic bacteria. Co-occurrence network analysis identified specialized functional modules, with HC and HD treatments (E. nutans + P. crymophila + F. sinensis + P. poophagorum) forming a “nitrogen transformation–antibiotic secretion” network (57.3% positive connections). Structural equation modeling (SEM) revealed that mixed sowing had the strongest direct effect on bacterial diversity (β = 0.76), surpassing indirect effects via soil (β = 0.37) and vegetation (β = 0.11). Redundancy analysis (RDA) identified vegetation cover (24.7% explained variance) and soil pH (20.0%) as key drivers of bacterial community assembly. Principal component analysis (PCA) confirmed HC and HD treatments as the most effective restoration strategies. This study elucidated a tripartite “vegetation–soil–microorganism” restoration mechanism, demonstrating that intermediate-diversity mixtures (3–4 species) optimize ecosystem recovery through niche complementarity, pathogen suppression, and enhanced nutrient cycling. These findings provided a scientific basis for species selection in alpine grassland restoration. Full article

Obsessive–compulsive disorder (OCD) is a multifactorial condition, and interest in gut–brain interactions is increasing. We conducted a systematic two-step review, registered in PROSPERO (CRD420251083936). Step 1 mapped core OCD biology to gut-relevant pathways, including neuroimmune activation, epithelial barrier function, microbial metabolites, and stress circuitry, to clarify plausible mechanisms. Step 2 synthesized evidence from human and preclinical studies that measured or manipulated microbiota. Searches across PubMed, EMBASE, Web of Science, PsycINFO, and Cochrane (September 2025) yielded 357 biological and 20 microbiota-focused studies. Risk of bias was assessed using the Joanna Briggs Institute checklist for human studies and SYRCLE’s tool for animal studies. Although taxonomic findings in human cohorts were heterogeneous, functional patterns converged: reduced short-chain fatty acid capacity, enrichment of pro-inflammatory pathways, and host markers of barrier disruption and inflammation correlating with OCD severity. Transferring patient microbiota to mice induced OCD-like behaviors with neuroinflammatory changes, partly rescued by metabolites or barrier-supporting strains. Mendelian randomization suggested possible causal contributions at higher taxonomic levels. Diet, especially fiber intake, and psychotropic exposure were major sources of heterogeneity. Evidence supports the microbiota as a modifiable co-factor in a subset of OCD, motivating diet-controlled, stratified clinical trials with composite host–microbe endpoints. Full article

Bacterial wilt is a highly destructive disease affecting a wide range of crops, with no effective chemical control methods currently available. Consequently, the development of microbial strategies for disease management has become increasingly important. Among these, plant immunity-intensifying microbes have demonstrated promising efficacy in controlling bacterial wilt. However, the influence of environmental factors, particularly light intensity, on the effectiveness of these microbes remains unclear. Light intensity is a critical regulator of the photosynthetic system and plant biochemical functions, including defense responses. In this study, we specifically utilized Arabidopsis plants grown under distinct light intensities to systematically examine how light conditions affect the induction of plant immune responses and the occurrence of bacterial wilt. Our findings revealed that Arabidopsis grown under high light intensity exhibited significantly stronger immune responses and reduced disease severity, compared to plants grown under low light intensity. Further, application of Bacillus amyloliquefaciens PMB05, a plant immunity-intensifying strain, resulted in more pronounced immune signaling and disease control efficacy under high light conditions. Experiments using salicylic acid (SA)-deficient mutants demonstrated that disruption of the SA pathway abolished the enhanced suppression of bacterial wilt conferred by B. amyloliquefaciens PMB05 under high light intensity, indicating that the SA pathway is indispensable for PMB05-mediated disease resistance. Moreover, the validation experiments in tomato plants supported these results, with B. amyloliquefaciens PMB05 significantly reducing bacterial wilt development under high light intensity. Collectively, our study demonstrates that growing plants under varying light intensities provides critical insights into how environmental conditions modulate the effectiveness of plant immunity-intensifying microbes, offering a potential strategy for integrated disease management in crops. Full article

Chronic hepatitis B (CHB) remains a major global health challenge, largely due to the persistence of covalently closed circular DNA (cccDNA) and impaired host immunity. Interferon-α (IFN-α), a key antiviral cytokine, not only directly restricts HBV replication but also orchestrates innate and adaptive immune responses. This review summarizes current advances in IFN-α-mediated immune regulation, highlighting its effects across diverse immune cell populations. Evidence indicates that IFN-α can reprogram immune responses to promote viral clearance, although clinical efficacy is limited by modest response rates and adverse effects. Recent progress in cytokine engineering, subtype research, and rational combination strategies—including nucleo(s/t)ide analogs, RNA interference therapeutics, antisense oligonucleotides, therapeutic vaccines, and beyond—has expanded opportunities to improve treatment outcomes. While challenges remain, these advances lay the foundation for optimizing IFN-α–based interventions and highlight IFN-α as a key driver for innovative therapies aimed at achieving a functional cure of chronic hepatitis B. Full article

The gut microbiota of insects, shaped by extensive coevolution, plays a crucial role in host adaptability and ecological expansion. The fall armyworm (Spodoptera frugiperda J.E. Smith), a highly polyphagous and migratory invasive pest, infests more than 350 plant species worldwide, resulting in substantial crop losses and increased reliance on pesticide applications. In this study, we employed 16S rRNA high-throughput sequencing to investigate diet-induced alternations in the gut microbial communities of larvae fed corn, rice, or an artificial diet. The results showed that diet significantly influenced microbial diversity, with rice-fed larvae exhibiting the highest richness. Firmicutes, Proteobacteria, and Cyanobacteria were the predominant bacterial phyla. Genus-level analysis revealed notable diet-dependent shifts, with Enterobacter and other genera (e.g., Ochrobactrum and Allorhizobium–Neorhizobium–Pararhizobium–Rhizobium) only detected in plant-fed groups. Additionally, current findings suggest that gut microbial genera are more prevalent when S. frugiperda larvae feed on rice plants than on corn plants or an artificial diet and are closely linked to their metabolic activities. Dominant microbial genera are expected to support essential metabolic processes and exhibit increased abundance on rice. These results indicate that the gut microbiome of S. frugiperda is diet-driven reorganization, potentially facilitating its polyphagy. This study extends the current understanding by elucidating the specific gut microbial taxa and their putative metabolic associations that are responsive to diet in S. frugiperda, thereby providing a theoretical basis for its polyphagous capability and underscoring microbiota-based strategies for sustainable pest management. Full article

Biological control with beneficial bacteria offers a sustainable alternative to synthetic agrochemicals for managing plant pathogens and enhancing plant health. However, bacterial biocontrol agents (BCAs) remain underexploited due to regulatory hurdles (such as complex registration timelines and extensive dossier requirements) and limited strain characterization. Recent advances in omics technologies (genomics, transcriptomics, proteomics, and metabolomics) have strengthened the bioprospecting pipeline by uncovering key microbial traits involved in biocontrol. Genomics enables the identification of biosynthetic gene clusters, antimicrobial pathways, and accurate taxonomy, while comparative genomics reveals genes relevant to plant–microbe interactions. Metagenomics uncovers unculturable microbes and their functional roles, especially in the rhizosphere and extreme environments. Transcriptomics (e.g., RNA-Seq) sheds light on gene regulation during plant-pathogen-bacteria interactions, revealing stress-related and biocontrol pathways. Metabolomics, using tools like Liquid Chromatography–Mass Spectrometry (LC-MS) and Nuclear Magnetic Resonance spectroscopy (NMR), identifies bioactive compounds such as lipopeptides, Volatile Organic Compounds (VOCs), and polyketides. Co-culture experiments and synthetic microbial communities (SynComs) have shown enhanced biocontrol through metabolic synergy. This review highlights how integrating omics tools accelerates the discovery and functional validation of new BCAs. Such strategies support the development of effective microbial products, promoting sustainable agriculture by improving crop resilience, reducing chemical inputs, and enhancing soil health. Looking ahead, the successful application of omics-driven bioprospection of BCAs will require addressing challenges of large-scale production, regulatory harmonization, and their integration into real-world agricultural systems to ensure reliable, sustainable solutions. Full article

Herbivorous animals rely on complex gastrointestinal systems and microbial communities to efficiently digest plant-based diets, extract nutrients, and maintain health. Recent advances in metagenomic technologies have enabled high-resolution, culture-independent analysis of gut microbiota composition, functional potential, and host–microbe interactions, providing insights into microbial diversity across the herbivore digestive tract. This review summarizes key findings on the gastrointestinal microbiota of herbivores, focusing on ruminant foregut and non-ruminant hindgut fermentation. Ruminants like cattle, sheep, and goats host microbiota enriched with fibrolytic and methanogenic microbes that facilitate fiber degradation and volatile fatty acid production, contributing significantly to energy balance. In contrast, non-ruminants such as horses and rabbits rely on hindgut fermentation, with distinct microbial taxa contributing to carbohydrate and protein breakdown. The review further explores how specific microbial taxa, including Prevotella, Fibrobacter, and Ruminococcus, correlate with improved feed efficiency and growth performance, particularly in ruminants. Additionally, the roles of probiotics, prebiotics, and symbiotics in modulating gut microbial composition and enhancing productivity are discussed. Despite significant advances, challenges remain in microbial sampling, functional annotation, and understanding the integration of microbiota with host physiology. The review emphasizes the potential of metagenomic insights in optimizing herbivore gut microbiota to improve feed efficiency, health, and sustainable livestock production. Full article

Defensins are a class of small cysteine-rich cationic antimicrobial peptides (AMPs) that play vital roles in immune-regulating insect–microbe interaction, offering great potential for developing pest control approaches using RNA interference (RNAi) and insect pathogens. However, the biocontrol potential of defensins from the destructive rice pest Nilaparvata lugens (brown planthopper, BPH) remains largely unexplored. Here, we identified and functionally characterized a defensin-encoding gene NldefB in BPH. The open reading frame (ORF) of NldefB is 315 bp in length, encoding 104 amino acids with a conserved Knot1 domain. The qRT-PCR results showed that the transcription level of NldefB went upward with the increasing developmental stages, with the highest expressions in the female adults and their fat body. The expression of NldefB was continuously induced by bacterial pathogens but exhibited a pattern of initial increase followed by a decrease when challenged by a fungal pathogen Metarhizium anisopliae. RNAi-mediated silencing of NldefB significantly decreased the host survival rate, egg production and hatchability, as well as the capability to resist fungal infection. Additionally, NldefB suppression resulted in a significant increase in microbial loads. Our findings underscored that NldefB plays essential roles in regulating host development, pathogen defense, and microbial maintenance, providing a potential target for RNAi- and microbe-mediated BPH biocontrol. Full article

Mucins are a family of heavily glycosylated proteins that form the main organic component of the oral mucosal barrier complex. Transmembrane mucin 1 (tMUC1) is anchored at the superficial epithelial surface to provide a protective function. The interaction of tMUC1 with oral microbes provides nutrients and physicochemical protection, promotes adhesion, and increases the microbe residence time in the oral cavity. Mucin-degrading microorganisms in the consortia also offer some advantages to oral microbes. The high molecular weight of mucin glycoproteins is hard to study because of their size, complexity, and heterogeneity. This review discusses how mucin facilitates oral microbiome colonization and how mucin–microbial interactions influence the development of oral cancer, mainly oral squamous cell carcinoma. Full article