Search Results (142)

This study focuses on the analysis of the simultaneous impact of inclined magnetohydrodynamic Carreau hybrid nanofluid flow over a stretching sheet, including microorganisms with the effects of chemical reactions in the presence and absence of slip conditions for dilatant $(n>1.0)$ and quasi-elastic hybrid nanofluid $(n<1.0)$ limitations. Meanwhile, the transfer of energy is strengthened through the employment of heat sources and bioconvection. The analysis incorporates nonlinear thermal radiation, chemical reactions, and Arrhenius activation energy effects on different profiles. Numerical simulations are conducted using the efficient Bvp5c solver. Motile concentration profiles decrease as the density slip parameter of the motile microbe and Lb increase. The Weissenberg number exhibits a distinct nature depending on the hybrid nanofluid; the velocity profile, skin friction, and Nusselt number fall when $(n>1.0)$ and increase when $(n<1.0)$. For small values of inclination, the 3D surface plot is far the surface, while it is close to the surface for higher values of inclination but has the opposite behavior for the 3D plot of the Nusselt number. A detailed numerical investigation on the effects of important parameters on the thermal, concentration, and motile profiles and the Nusselt number reveals a symmetric pattern of boundary layers at various angles $\left(\alpha \right)$. Results are presented through tables, graphs, contour plots, and streamline and surface plots, covering both shear-thinning cases $(n<1.0)$ and shear-thickening cases $(n>1.0)$. Full article

Backgrunod/Objectives: Routine identification of common bacterial pathogens is typically efficient, utilizing standardized, cost-effective methods. However, the diagnostic process becomes significantly more complex when dealing with rare or unexpected microorganisms, especially as they can be considered colonizers in many cases. Methods: This study presents diagnostic details of an uncommon pathogen, Vibrio alginolyticus, isolated from auricular discharge in a patient with non-Hodgkin lymphoma diagnosed with persistent otitis externa and explores its identification through both conventional and modern laboratory approaches. Sequential ear discharge cultures resulted in phenotypically similar but genomically different Vibrio alginolyticus isolates. We complemented classical methods like conventional culture (on Columbia agar and CLED agar), Vitek2 Compact identification, and EUCAST disk diffusion antimicrobial susceptibility testing (following the EUCAST version 12.0 guidelines) with MALDI-TOF mass spectrometry and Illumina/Nanopore whole genome sequencing. Comparative analysis of the genomes was performed with the PeGAS pipeline, Unicycler, and 1928Diagnostics SNP analysis. Results: The Vitek2 analysis identified both isolates as V. alginolyticus with 99% confidence, and this was supported by the MALDI-TOF MS results. The first isolate (A) was fully susceptible to the antibiotics tested, while the second (B) showed resistance to ciprofloxacin. Whole genome sequencing revealed 99.23% and 98.60% nucleotide identity to the V. alginolyticus reference genome for isolates A and B, respectively, with a 99.8% match between them. Isolate B acquired a gyrA (c.1870C>T) mutation that correlates with the ciprofloxacin resistance (MIC > 0.5 mg/L). Both genomes carry hlyA (hemolysin), toxR (cholera toxin regulator), genes involved in biofilm formation (rpoN, relA, spoT, opp), luxS (motility), proA, vacB (virulence factors), and tet(34) (oxytetracycline resistance). A core genome SNP distance of <100 indicates clonal relatedness. Our integrated (phenotypic and genomic) diagnostic approach confirmed V. alginolyticus and documented host resistance evolution, with a virulence repertoire that could explain the clinical evolution. Conclusions: This case highlights the utility of molecular methods in confirming species identity, detecting resistance markers, characterizing virulence determinants, and differentiating a pathogen from a colonizer, supporting targeted clinical management. Full article

The phyllosphere, the aerial part of plants, serves as a crucial habitat for diverse microorganisms. Phyllosphere bacteria can activate protective mechanisms that help plants resist disease. This study focuses on isolating and characterizing phyllosphere bacteria from cucurbits to evaluate their potential in controlling Colletotrichum orbiculare, a pathogen causing anthracnose in cucumbers. Among the 76 bacterial isolates collected, 11 exhibited strong antagonistic effects against C. orbiculare in vitro. Morphological and 16S rRNA analyses identified these isolates as different Bacillus species, including B. vallismortis, B. velezensis, B. amyloliquefaciens, and B. subtilis. These bacteria demonstrated essential plant-growth-promoting and biocontrol traits, such as motility, biofilm formation, phosphate solubilization, nitrogen fixation, and the production of indole acetic acid. Most of the bacterial strains also produced biocontrol compounds such as ammonia, acetoin, siderophores, hydrogen cyanide, chitinase, protease, lipase, and cellulase. The application of these bacteria significantly enhanced cucumber growth in both non-manured and organically manured soils, showing improvements in root and shoot length, chlorophyll content, and biomass accumulation. Additionally, bacterial treatments effectively reduced anthracnose severity, with isolates GL-10 and L-1 showing the highest disease suppression in both soil types. Colonization studies showed that phyllobacteria preferentially colonized healthy leaves over roots and diseased tissues, and they were more effective in manure-amended soils. These results suggest that Bacillus phyllobacteria have strong potential as sustainable bio-stimulants and biocontrol agents, offering an effective approach for enhancing cucumber growth and disease control under both fertilized and unfertilized soil conditions. Full article

Biofilms develop in sequential steps resulting in the formation of three-dimensional communities of microorganisms that are encased in self-produced extracellular polymeric substances. Biofilms play a key role in device-associated infections, such as catheter-associated urinary tract infections (CAUTIs), because they protect microorganisms from standard antimicrobial therapies. Current strategies to prevent biofilm formation in catheter-related infections, including prophylactic antibiotics and antibiotic-coated catheters, have been unsuccessful. This finding highlights a need for novel approaches to address this clinical problem. In this study, biofilm-forming phenotypes of common Gram-negative bacteria associated with CAUTIs were treated with antisense peptide nucleic acids (PNAs), and biofilm biomass and bacterial viability were quantified after 24 h of treatment. A cocktail of PNAs targeting the global regulator genes rsmA, amrZ, and rpoS in Pseudomonas aeruginosa significantly reduced viability and thus appropriately eliminated biofilm biomass. Antisense-PNAs against these same gene targets and the motility regulator gene motA inhibited biofilm formation among isolates of Klebsiella pneumoniae, Enterobacter cloacae, and Escherichia coli but did not reduce bacterial viability. These results suggest that antisense-PNAs are a promising new technology in preventing biofilm formation in urinary catheters, especially as a potential complement to conventional antimicrobials. Full article

The bacterial phylum Verrucomicrobiota accommodates free-living and symbiotic microorganisms, which inhabit a wide range of environments and specialize in polysaccharide degradation. Due to difficulties in cultivation, much of the currently available knowledge about these bacteria originated from cultivation-independent studies. A phylogenetic clade defined by the free-living bacterium from oilsands tailings pond, Oleiharenicola alkalitolerans, and the symbiont of the tunicate Lissoclinum sp., Candidatus Didemniditutus mandelae, is a poorly studied verrucomicrobial group. This clade includes two dozen methagenome-assembled genomes (MAGs) retrieved from aquatic and soil habitats all over the world. A new member of this clade, strain Vm1, was isolated from a methane-fed laboratory bioreactor with a Methylococcus-dominated methane-oxidizing consortium and characterized in this study. Strain Vm1 was represented by ultra-small, motile cocci with a mean diameter of 0.4 µm that grew in oxic and micro-oxic conditions at temperatures between 20 and 42 °C. Stable development of strain Vm1 in a co-culture with Methylococcus was due to the ability to utilize organic acids excreted by the methanotroph and its exopolysaccharides. The finished genome of strain Vm1 was 4.8 Mb in size and contained about 4200 predicted protein-coding sequences, including a wide repertoire of CAZyme-encoding genes. Among these CAZymes, two proteins presumably responsible for xylan and arabinan degradation, were encoded in several MAGs of Vm1-related free-living verrucomicrobia, thus offering an insight into the reasons behind wide distribution of these bacteria in the environment. Apparently, many representatives of the Oleiharenicola–Candidatus Didemniditutus clade may occur in nature in trophic associations with methanotrophic bacteria, thus participating in the cycling of methane-derived carbon. Full article

Biofilms are complex microbial communities embedded in a self-produced extracellular polymeric matrix. These structures confer increased resistance/tolerance to antimicrobial agents and immune responses, posing a serious challenge in both clinical and industrial contexts. In response to these challenges, increasing attention has been given to the development of novel antibiofilm strategies. Among the promising alternatives are lectins—carbohydrate-binding proteins. This review explores the structural and functional features of biofilms and critically discusses recent studies reporting the antibiofilm effects of lectins. Additionally, it addresses the main challenges and limitations surrounding the practical application of lectins to combat biofilms. Lectins from plants, animals, and microorganisms have shown potential to inhibit biofilm formation by disrupting the extracellular matrix, modulating quorum sensing, and affecting bacterial motility and metabolism. Additionally, they can eradicate established biofilms by degrading the matrix, killing or removing microbial cells, and/or preventing biofilm reformation. Together, the findings reviewed here support the continued investigation of lectins as potential agents against biofilm-associated infections as well as highlight the need to address existing gaps, such as the lack of in vivo studies and limited research on the structure–function relationships of lectins and their antibiofilm activity. Full article

This paper explores the complex dynamics of mixed convective flow in a Casson fluid saturated in a non-Darcy porous medium, focusing on the influence of gyrotactic microorganisms, internal heat generation, and multiple convective mechanisms. Casson fluids, known for their non-Newtonian behavior, are relevant in various industrial and biological contexts where traditional fluid models are insufficient. This study addresses the limitations of the standard Darcy’s law by examining non-Darcy flow, which accounts for nonlinear inertial effects in porous media. The governing equations, derived from conservation laws, are transformed into a system of no linear ordinary differential equations (ODEs) using similarity transformations. These ODEs are solved numerically using a finite differencing method that incorporates central differencing, tridiagonal matrix manipulation, and iterative procedures to ensure accuracy across various convective regimes. The reliability of this method is confirmed through validation with the MATLAB (R2024b) bvp4c scheme. The investigation analyzes the impact of key parameters (such as the Casson fluid parameter, Darcy number, Biot numbers, and heat generation) on velocity, temperature, and microorganism concentration profiles. This study reveals that the Casson fluid parameter significantly improves the velocity, concentration, and motile microorganism profiles while decreasing the temperature profile. Additionally, the Biot number is shown to considerably increase the concentration and dispersion of motile microorganisms, as well as the heat transfer rate. The findings provide valuable insights into non-Newtonian fluid behavior in porous environments, with applications in bioengineering, environmental remediation, and energy systems, such as bioreactor design and geothermal energy extraction. Full article

Trypanosoma cruzi is a kinetoplastid parasite and etiological agent of Chagas disease. Given the significant morbidity and mortality rates of this parasitic disease, possible treatment alternatives need to be studied. 3-Bromopyruvate (3-BrPA) is a synthetic analog of pyruvate that was introduced in the early 21st century as an anticancer agent, affecting the proliferation and motility of certain microorganisms. Therefore, this work aims to evaluate the role of 3-BrPA in the energy metabolism, proliferation, and infectivity of T. cruzi, with a primary focus on the mitochondrial state, ATP production, and the key glycolytic pathway enzymes. It was observed that mitochondrial function in 3-BrPA cells was impaired compared to control cells. Accordingly, cells maintained in control conditions have a higher intracellular ATP content than cells maintained with 3-BrPA and higher ecto-phosphatase activity. However, the 3-BrPA reduced ecto-nuclease activity and was capable of hydrolyzing 5′-AMP, ADP, and ATP. When we evaluated two key glycolytic pathway enzymes, glucose kinase (GK) and glyceraldehyde-3-phosphate dehydrogenase (GAPDH), we observed that 3-BrPA induced higher GAPDH activity but did not alter GK activity. The compensatory energy mechanisms presented in T. cruzi may influence the process of cell metabolism and, consequently, the functional infectious process, suggesting the potential use of 3-BrPA in future clinical applications for Chagas disease. Full article

Background/Objectives: Antibiotic-resistant bacteria pose a global health threat, driving the need for alternative treatments. Medicinal plants such as Clerodendrum glabrum and Gardenia volkensii are promising sources of bioactive compounds. This study evaluated the antioxidant, antibacterial, and anti-virulence activities of their acetone extracts, comparing sonication and conventional shaking extraction methods. Methods: Colorimetric methods assessed total polyphenol content. Antioxidant activity was measured using 2,2-Diphenyl-1-picrylhydrazyl (DPPH) radical scavenging and hydrogen peroxide (H₂O₂) assays. Antibacterial effects against Escherichia coli, Pseudomonas aeruginosa, Staphylococcus aureus, and Streptococcus pyogenes were analysed through broth microdilution, total activity, growth kinetics, and combinational studies. Anti-virulence activity was assessed via biofilm biomass inhibition, metabolic activity and anti-swarming assays. Results: Phenolics were the most abundant phytochemicals, followed by flavonols. C. glabrum exhibited strong antioxidant activity in both DPPH and H₂O₂ assays. MIC values ranged from 0.16 to 2.5 mg/mL, with the shaken G. volkensii leaf extract showing the highest total activity (575 mL/g) against E. coli. A combination of G. volkensii leaf extract and gentamicin resulted in an additive antibacterial effect. All extracts prevented the formation of biofilm biomass in all tested microorganisms (inhibition > 50%) except for extracts obtained by sonication. The sonicated leaf extract of C. glabrum inhibited initial E. coli attachment. Additionally, the sonicated leaf extract of C. glabrum inhibited P. aeruginosa motility. Conclusions: These findings suggested that a targeted approach based on plant species and extraction methods could improve treatment outcomes against biofilm-associated pathogens. Notably, acetone extracts derived from C. glabrum and G. volkensii exhibit considerable potential as natural sources of antioxidant, antibacterial, and anti-virulence agents effective against nosocomial infections. Full article

Extracellular electron transport (EET) supports the survival of specific microorganisms on the Earth’s surface by facilitating microbial respiration with diverse electron acceptors. A key aspect of EET is the organization of electron relays, i.e., multi-heme c-type cytochromes (MHCs), within the periplasmic space of microbial cells. In this study, we investigated the mobility of periplasmic electron relays in Shewanella oneidensis MR-1, a model strain capable of EET, using in vivo protein crosslinking to the MHCs. First, we established that crosslinking efficiency correlates with the spatial proximity and diffusion coefficient of protein molecules through in vitro tests. Based on these findings, we identified distinct molecular behaviors of periplasmic MHCs, showing that the tetraheme flavocytochrome FccA, which also serves as a periplasmic fumarate reductase, forms protein complexes with limited motility, while the small tetraheme c-type cytochrome CctA remains discrete and mobile. Both MHCs contribute to EET for bioelectrochemical nitrate and nitrite reduction. These findings reveal dual mechanisms for organizing periplasmic electron relays in EET, advancing our understanding of microbial extracellular respiration. Full article

Background: Flowering members of the globally diffused Rosaceae family include popular plants, such as apple, almond, and cherry, which play a fundamental role as honeybee nectariferous and polleniferous agents. Through the production of honey, these plants can also play an indirect role in the prevention and treatment of many diseases, including infections, fighting the occurrence of resistant microorganisms, and concurrently stimulating the growth of beneficial bacteria. Objectives: This study focused on the effect of some Rosaceae plants’ honey, including hawthorn, cherry, raspberry, almond, and apple, against the pathogens Acinetobacter baumannii, Escherichia coli, Klebsiella pneumoniae, Listeria monocytogenes, Pseudomonas aeruginosa, and Staphylococcus aureus. Results: Results demonstrated the honey’s ability to impair swimming motility. A crystal violet test indicated that honey could inhibit the formation and stabilization of biofilms, with inhibition rates up to 59.43% for immature biofilms (showed by apple honey against A. baumannii) and 39.95% for sessile bacterial cells in mature biofilms (when we used cherry honey against S. aureus). In the test with 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide, cherry and apple honey were the most effective in inhibiting sessile cell metabolism honey in both immature (56.47% cherry honey vs. K. pneumoniae) and mature biofilms (54.36% apple honey vs. A. baumannii). Honey stimulated the growth of Lactobacillus bulgaricus, Lacticaseibacillus casei Shirota, Lactobacillus gasseri, Lacticaseibacillus plantarum, and Lacticaseibacillus rhamnosus; hawthorn, raspberry, and almond honey significantly increased the in vitro adhesion capacity of L. bulgaricus and L. casei Shirota. Tests with probiotic supernatants demonstrated honey’s ability to inhibit the biofilm formation and metabolism of the pathogens. Conclusions: Our results encourage further studies to assess the potential application of Rosaceae honey for food preservation and in the health field, as it could fight the antimicrobial resistance of food and clinical pathogens, and potentially enhance the host’s gut wellness. The use of honey for nanotechnological and biotechnological approaches could be suggested too. Full article

Erwinia are widely known as phytopathogenic bacteria, but among them, there are also plant-friendly strains that can promote plant growth (PGPR). The Erwinia-like strain OPT-41 was isolated from Triticum aestivum seedlings as a potential PGPR. The cells (0.9–1.3 × 1.5–3.1 µm) of this microorganism are Gram-negative, rod-shaped, motile (with peritrichous flagella), and non-spore- and non-capsule-forming. The 16S rRNA gene sequence analyses showed it is located in the Erwiniaceae family and has a pairwise similarity above the species delineation threshold of 98.65% with several of its members: Erwinia tasmaniensis (99.21%), Candidatus Pantoea bathycoeliae (98.93%), Pantoea agglomerans (98.87%), Erwinia endophytica (98.83%), Erwinia persicina (98.82%), Erwinia billingiae (98.76%) and Erwinia aphidicola (98.75%). Whole genome-based taxonomy performed on the Type (Strain) Genome Server clarified the status of strain OPT-41, detecting it as a potential new species in the genus Erwinia. The microorganism under study was the most closely related to the type strain of E. phyllosphaerae, demonstrating 27.2% similarity in dDDH, 83.44% similarity in OrthoANIu, and 1.9% difference in G+C content. The major fatty acids of strain OPT-41 were 9 C_16:1, C_14:0, and C_16:0. A combination of genome-based taxonomy and traditional polyphasic taxonomy clearly indicated that strain OPT-41 belongs to a novel Erwinia species, for which the name E. plantamica sp. nov was proposed. OPT-41 (=IBPPM 712=VKM B-3873D=CCTCC AB 2024361) has been designated as the type strain. In addition, OPT-41 was found to have low degradation potential for host plant pectins and proteins and be friendly in Triticum aestivum and Hordeum vulgare crops. Full article

Nanofluids, with their enhanced thermal properties, provide innovative solutions for improving heat transfer efficiency in renewable energy systems. This study investigates a numerical simulation of bioconvective flow and heat transfer in a Williamson nanofluid over a stretching wedge, incorporating the effects of chemical reactions and hydrogen diffusion. The system also includes motile microorganisms, which induce bioconvection, a phenomenon where microorganisms’ collective motion creates a convective flow that enhances mass and heat transport processes. This mechanism is crucial for improving the distribution of nanoparticles and maintaining the stability of the nanofluid. The unique rheological behavior of Williamson fluid, extensively utilized in hydrometallurgical and chemical processing industries, significantly influences thermal and mass transport characteristics. The governing nonlinear partial differential equations (PDEs), derived from conservation laws and boundary conditions, are converted into dimensionless ordinary differential equations (ODEs) using similarity transformations. MATLAB’s bvp4c solver is employed to numerically analyze these equations. The outcomes highlight the complex interplay between fluid parameters and flow characteristics. An increase in the Williamson nanofluid parameters leads to a reduction in fluid velocity, with solutions observed for the skin friction coefficient. Higher thermophoresis and Williamson nanofluid parameters elevate the fluid temperature, enhancing heat transfer efficiency. Conversely, a larger Schmidt number boosts fluid concentration, while stronger chemical reaction effects reduce it. These results are generated by fixing parametric values as $0.1<\varpi <1.5, 0.1<\mathit{Nr}<3.0, 0.2<\mathrm{Pr}<0.5, 0.1<\mathit{Sc}<0.4, \mathrm{and} 0.1<\mathit{Pe}<1.5.$ This work provides valuable insights into the dynamics of Williamson nanofluids and their potential for thermal management in renewable energy systems. The combined impact of bioconvection, chemical reactions, and advanced rheological properties underscores the suitability of these nanofluids for applications in solar thermal, geothermal, and other energy technologies requiring precise heat and mass transfer control. This paper is also focused on their applications in solar thermal collectors, geothermal systems, and thermal energy storage, highlighting advanced experimental and computational approaches to address key challenges in renewable energy technologies. Full article

Gampsocleis gratiosa Brunner von Wattenwyl, 1862, is a type of omnivorous chirping insect with a long history of artificial breeding. It has high economic value and is also an excellent orthopteran model organism. In this study, 12 types of culture media combined with 16S rRNA sequencing were employed to isolate 838 bacterial strains from the gut of G. gratiosa. After sequence comparison, a total of 98 species of bacteria were identified, belonging to 3 phyla, 5 classes, 11 orders, 20 families, and 45 genera. Firmicutes and Proteobacteria accounted for the majority (92.86%). At the order level, Enterobacteriaceae, Bacillales, and Lactobacillales predominated (79.59%). At the genus level, Klebsiella (11.22%) and Enterococcus (7.14%) predominated. This study also enumerated the strain morphological, physiological and biochemical properties of 98 species of bacteria, including colony morphology, Gram staining, bacterial motility test, temperature gradient growth, pH gradient growth, citrate utilization test, temperature oxidase test, contact enzyme test, methyl red test, V-P test, indole test, gelatin liquefaction test, nitrate reduction test, hydrogen sulfide test, starch hydrolysis test, cellulose decomposition test, esterase (corn oil) test and antibiotic susceptibility testing. Additionally, 16 antibiotics were utilized to test the bacterial susceptibility of the strains. This study explored the types and community structure of some culturable microorganisms in the intestinal tract of G. gratiosa and recorded their physiological characteristics. These data reflect the physiological functions of the intestinal microorganisms of G. gratiosa and provide support for subsequent research on the interaction mechanism between microorganisms and their hosts. Full article