Search Results (211)

Atopic dermatitis (AD) is a chronic inflammatory skin disease influenced by several factors, including immune system imbalance, impairment of the epidermal barrier, and alterations in the composition of the gut and skin bacterial and fungal microbiota. This study combines metagenomic sequencing and culture-based methods to explore the impact of probiotic supplementation on the cutaneous microbiota and mycobiota of AD patients. Twenty-five adults diagnosed with AD were enrolled, and skin swabs were analyzed to characterize microbial diversity and load. Culturomic analyses identified 42 bacterial and 6 fungal species, confirming Staphylococcus aureus and Candida parapsilosis as predominant taxa. High-throughput sequencing revealed Staphylococcus spp. and Malassezia spp. as dominant genera, with notable interindividual variability. While probiotic use did not significantly influence bacterial diversity, it was associated with higher richness and evenness in fungal communities, as shown by alpha and beta diversity metrics. Malassezia restricta was more prevalent among probiotic users, whereas Candida parapsilosis and Rhodotorula mucilaginosa were enriched in non-users. These findings indicate an association between probiotic use and differences in the composition and diversity of the skin mycobiota compared with the bacterial microbiota, suggesting that fungal communities may be more responsive to probiotic-associated factors. Integrating metagenomic and culturomic approaches offers valuable insights into the complex interactions among host factors, microbial communities, and probiotic use in AD, paving the way for targeted microbiome-based therapeutic strategies. Full article

Marine fungi are pivotal components of coastal ecosystems, facilitating essential biogeochemical cycling and trophic dynamics. However, the complex mechanisms governing their spatiotemporal community patterns in tropical–subtropical coasts remain largely unexplored. In this study, we characterized marine fungal diversity across a comprehensive seasonal cycle (spring (March), summer (June), autumn (August), and winter (December)) at 21 representative sites along the Leizhou Peninsula, China. These sites were strategically selected to encompass a broad range of dissolved inorganic nitrogen (DIN) gradients. Fungal community composition was characterized via high-throughput sequencing of the internal transcribed spacer 2 (ITS2) region, followed by functional guild profiling using the FUNGuild database. A total of 8777 amplicon sequence variants (ASVs) were identified, encompassing a broad taxonomic breadth of 10 phyla and 358 genera. Ascomycota, Basidiomycota, and Chytridiomycota emerged as the predominant phyla across all samples. Our results revealed significant spatiotemporal heterogeneities: seasonal succession fundamentally reshaped community composition, with DIN exerting its most pronounced influence during the winter. Furthermore, fungal functional structures exhibited distinctive clustering across regions defined by DIN enrichment levels. Co-occurrence network analysis revealed a highly modular and robust architecture, characterized by predominantly positive interactions and dense inter-taxon connectivity. These findings underscore the synergistic influence of temporal dynamics and DIN enrichment in shaping marine fungal community assembly and functional compositions. Our study provides critical baseline insights into the ecological resilience of coastal mycobiota in the South China Sea. Full article

Cecina de León is a traditional Spanish dry-cured beef product whose surface, as in other similar meat products, becomes heavily colonised by fungi during ripening, raising concerns related to possible mycotoxin contamination. This study aimed to characterise the mycobiota associated with cecina and its production environment, with particular emphasis on mycotoxigenic Penicillium species. Seventy-eight cecina samples and 26 air samples were collected from meat-processing plants and local markets in the province of León (Spain) and analysed for fungal counts, water activity and pH. A total of 101 mould isolates and 16 yeasts were recovered, with Penicillium accounting for 88% of all moulds. Sixteen Penicillium species were identified using a polyphasic approach integrating macro- and micromorphological analysis, extrolite production, molecular markers (BenA, CaM and ITS), and MALDI-TOF MS. Mycotoxin screening by HPTLC and HPLC-PDA targeted cyclopiazonic acid, ochratoxin A, patulin, citrinin, griseofulvin and mycophenolic acid, revealing that 51% of the Penicillium isolates were mycotoxin producers, mainly P. commune. The proposed polyphasic strategy, including MALDI-TOF MS as a rapid complementary tool, offers a practical framework for the surveillance of fungal communities and mycotoxin risk in meat-processing environments. Full article

The Amazon Forest harbors one of the largest fungal diversities on the planet, occupying a wide variety of ecological niches comprising terra firme (non-flooded forest), várzea (white-water floodplains), and igapó (black-water floodplains). In this review article, we examine Amazonian fungal diversity based on three complementary approaches—culture-based surveys, in situ inventories of macrofungi, and environmental DNA/metagenomic analyses—discussing advances, limitations, and contributions to regional mycological knowledge. Subsequently, we present a critical synthesis of the potential of Amazonian basidiomycetes regarding the production of metabolites with antimicrobial activity, highlighting the main genera reported in the literature, the chemical classes involved (e.g., terpenes, steroids, quinones, and bioactive peptides), and the metabolic pathways responsible for their biosynthesis. The integration between biodiversity and bioprospecting underscores the importance of Amazonian fungi both for understanding ecological processes and for the development of new solutions to the antimicrobial resistance challenge. This work seeks to fill current gaps in the academic literature and to contribute to future strategies for the conservation and sustainable use of regional mycobiota. Full article

In the current work, the analysis covered 70 isolates of fungi belonging to Botryosphaeriaceae obtained in the years 2007–2017 during research on the mycobiota of F. excelsior trees with dieback symptoms in various regions of Poland. Five botryosphaeriaceous species were identified: Diplodia fraxini, D. seriata, D. sapinea, Dothiorella omnivora, and Do. sarmentorum, supported by morphological characteristics and nucleotide sequence data from three genes. The effect of temperature on the in vitro growth of colonies of five identified botryosphaeriaceous species was assessed. Dothiorella omnivora achieved optimal growth at 19.0 °C, while the other four species have shown optimal growth between 22.8 °C (Do. sarmentorum) and 25.7 °C (D. seriata). The pathogenicity test was performed in field conditions on nine-year-old F. excelsior seedlings. In total, wound inoculation was performed on 176 shoots, using 22 isolates of five identified fungal species. Each isolate was inoculated onto eight F. excelsior shoots. The symptoms on shoots were examined at 12 weeks after the inoculation. Among the tested fungal species, necrotic lesion was caused by D. fraxini, D. seriata, and Do. sarmentorum. The extent of damage they caused showed statistically significant differences. The highest pathogenic properties were demonstrated by D. fraxini, which caused necrotic lesion with a length of 34.25–50.50 mm (mean 40.13 mm) on inoculated trees. D. seriata showed the lowest degree of virulence. Half of its strains caused necrotic lesions, which did not differ significantly from the control. Diplodia sapinea and Do. omnivora did not cause any visible lesions. None of the control shoots developed necrosis. The role of Botryosphaeriaceae species in intensifying disease symptoms in ash trees in the context of Hymenoscyphus fraxineus invasion and climate changes was discussed. Full article

Head and neck cancer (HNC) patients frequently experience alterations in the oral environment following radiotherapy, including xerostomia and impaired mucosal integrity, which may favour fungal overgrowth. This study aimed to characterise oral Candida colonisation in radiotherapy-treated HNC patients and compare it with that of healthy individuals. Unstimulated saliva samples from 61 HNC patients and 100 controls were cultured on chromogenic agar, and isolates were identified using API 20C AUX or MALDI-TOF. Salivary flow was measured to quantify xerostomia. A representative subset of isolates (10 per group) underwent antifungal susceptibility testing by disk diffusion according to CLSI/EUCAST criteria. Candida colonisation was significantly higher in HNC patients than in controls (64.6% vs. 20%, p < 0.001), with greater species diversity and increased detection of non-albicans yeasts, including C. tropicalis, C. parapsilosis, C. glabrata, and C. krusei. All HNC patients exhibited reduced salivary flow. Azole resistance was more frequent among HNC isolates (26%) than among controls (10%), whereas all isolates remained susceptible to amphotericin B and nystatin. These findings indicate that radiotherapy-associated xerostomia substantially alters the oral mycobiota and underscore the importance of routine species-level identification and antifungal susceptibility testing in HNC patients to guide clinical decision-making. Full article

The skin of bats hosts diverse microbial communities, yet most research has focused on bacteria or single fungal pathogens such as Pseudogymnoascus destructans. Here, we present the first direct comparison of culturable skin mycobiota in the greater mouse-eared bat (Myotis myotis) between hibernation and the reproductive season. Swabs collected from hibernating bats in the Nietoperek reserve and from maternity colonies in Lipy yielded 41 fungal species, including 27 that represent new records for M. myotis. Winter assemblages were less diverse but strongly dominated by Penicillium (>90% of isolates), while summer maternity roosts supported broader communities shaped by environmental exposure and plant-associated fungi. Despite seasonal turnover, a small set of taxa, including Aspergillus fumigatus, Mucor fragilis, and Pseudogymnoascus pannorum, persisted across both seasons, indicating the presence of a limited core mycobiota. Richness was higher on wing membranes than on tail membranes, whereas biometric variables such as sex, age, body mass, and forearm length showed only weak and inconsistent associations with fungal diversity. These findings demonstrate that seasonal filtering is likely one of the main factors determining the skin mycobiota in M. myotis. Additionally, we expand the known fungal diversity of this species, and emphasize its role as a reservoir of environmental, opportunistic, and pathogenic fungi. Full article

This study investigated the composition and temporal dynamics of wood-inhabiting fungal communities in four aging tree species in Lednice Castle Park (Czech Republic), located within the Lednice–Valtice Cultural Landscape, a UNESCO World Heritage Site. Forty wood cores were collected from 20 trees at two time points (2023 and 2024). The hosts included horse chestnut (Aesculus hippocastanum L.), copper beech (Fagus sylvatica ‘Atropunicea’ L.), oak (Quercus robur L.), and poplar (Populus alba L.), each exhibiting visual signs of decline. Fungal assemblages were profiled using ITS2 high-throughput amplicon sequencing. Ascomycota dominated across all hosts (72–89% of reads), while Basidiomycota contributed 8–24%, largely represented by Agaricomycetes in F. sylvatica. Alpha diversity varied significantly among hosts (Shannon: F_3,36 = 10.61, p = 0.001 in 2023; F_3,36 = 10.00, p = 0.001 in 2024). Temporal shifts were host-dependent: F. sylvatica exhibited the strongest year-to-year decline in richness (Chao1: −83%, p = 0.007) and increased beta dispersion, while A. hippocastanum and P. alba showed significant increases in diversity (+65% and +42%, respectively). Community composition was shaped by host species (PERMANOVA Bray–Curtis: p = 0.001) and shifted over time (Jaccard: p = 0.001), with F. sylvatica showing the highest temporal turnover. Functional guild analysis revealed consistent dominance of saprotrophs (29–41%) and mixed pathotroph–saprotroph guilds (23–36%) across hosts, indicating active degradation processes inside functional xylem. These results indicate that, within the studied system, the wood mycobiome of aging trees is host-dependent and temporally dynamic rather than static or functionally neutral. Short-term temporal turnover observed between sampling years may contribute to shifts in fungal community composition and succession within wood, with potential implications for tree decline processes in managed historical park landscapes. Full article

Aeromycoflora present in the library environment is known to play a significant role in triggering allergies and contributing to the deterioration of both cellulosic and non-cellulosic materials within the intramural setting of the Midnapore College Library. Fungal spores not only accelerate the aging and degradation of books but also pose considerable health risks to students, library visitors, and staff. In total, 480 fungal colonies belonging to 15 genera and 28 species were recorded using the culture plate exposure method. The predominant taxa included Aspergillus/Penicillium, Alternaria alternata, Alternaria solani, Cladosporium cladosporioides, Curvularia lunata, Penicillium oxalicum, Epicoccum sp., Fusarium solanii, Fusarium oxysporum, Periconia sp., Rhizopus sp., and other Penicillium species. Many of these fungi are well-documented allergens and have been reported to cause adverse health manifestations—such as respiratory discomfort and skin irritation—among students, teaching staff, and book handlers exposed to airborne mycobiota. The present study aimed to investigate the aeromycological diversity within the Midnapore College Library and to conduct immuno-clinical assessments to identify specific serum IgE using both in vivo and in vitro diagnostic techniques. Individuals frequently visiting the library reported symptoms including eye irritation, headaches, itchy skin, sore throat, and severe asthma. Spearman’s rank correlation analysis revealed a significant association between total and dominant spore concentrations and the health status of affected individuals. Clinico-immunological evaluations confirmed the allergenicity of Aspergillus fumigatus, with 39.5% of atopic individuals showing positive reactions in skin prick tests (SPT). Additionally, three novel sero-reactive proteins were identified, offering valuable insights for local clinicians in diagnosing and managing fungal-induced allergic conditions. Full article

The plant microbiome plays important roles in plant growth and resistance, but its assembly and affecting factors have not been fully studied for most of the agricultural plants. In this study, the endophytic mycobiota of the leaves and roots and the rhizosphere soils of five pummelo varieties were profiled based on the amplicon sequencing of the fungal internal transcribed spacer (ITS). The fungal richness and diversity were significantly different among the compartments, but not among the pummelo varieties. The composition and structure of the endophytic mycobiota of the compartments were significantly different across all five pummelo varieties. These suggest that the variety effect is weaker than the compartment effect, but still significant in shaping the pummelo mycobiota. Specifically, the dominant leaf endophytic fungal taxa (e.g., Fusarium and Zasmidium), and the root selection of fungal genera from the rhizosphere soils, were significantly different among the varieties. And also, the variety effect is more significant in shaping the leaf endophytic mycobiota than those of the roots. Finally, the pummelo varieties also showed some consistent alterations on the endophytic mycobiota, such as the root enrichment of Exophiala species. Our study indicates that the endophytic mycobiota of pummelos is significantly and interactively affected by plant variety and compartment effects, and suggests some fungi of interest for further tests. Full article

Black pepper (Piper nigrum L.) has historically been among the most consumed spices globally. Brazil is one of the world’s largest producers and exporters, and is the largest in the Western Hemisphere. This study describes two new fungal species associated with black pepper commercialized in Brazil. The first, Penicillium pipericola sp. nov., belongs to the subgenus Penicillium, section Paradoxa, series Atramentosa. The second, Syncephalastrum brasiliense sp. nov., belongs to the order Mucorales, family Syncephalastraceae. The taxonomic classification of these species was supported by a pluralistic approach, based on multilocus phylogenetic analyses, morphological analyses, and metabolomics. Furthermore, the metabolomic analysis revealed considerable biosynthetic versatility of the new species under different cultivation conditions, producing metabolites with therapeutic and biotechnological potential. The identification of these species increases the understanding of fungal diversity in the black pepper production chain and may have important implications for the microbiological quality of the product, for the understanding of ecological interactions within the agroecosystem and for potential industrial applications. Full article

The holobiont of the blacklegged tick (Ixodes scapularis) includes maternally inherited rickettsial endosymbionts and environmentally acquired microbes that may influence tick fitness and vector competence. While previous studies have focused on characterizing the microbiota of I. scapularis ticks, less is known about the influence of tick infection status on microbial assemblages. Here, we collected engorged female I. scapularis ticks from hunter-harvested white-tailed deer (Odocoileus virginianus) across 11 counties in Wisconsin during fall 2022. The ticks were maintained in laboratory conditions for oviposition and then frozen for nucleic acid extraction. The infection status of each tick was determined using qPCR, targeting Borrelia spp., Babesia spp., and Powassan virus. Bacterial and fungal communities were characterized through amplicon-based sequencing targeting the 16S rRNA gene and ITS2 region, respectively. Our targeted pathogen testing revealed that 14.1% of the collected ticks were infected with Babesia odocoilei and 23.3% with Borrelia burgdorferi. The microbial community composition of ticks was significantly influenced by infection status and pathogen identity. Notably, Borrelia-infected ticks exhibited distinct microbiota profiles and increased microbial network connectivity. These findings provide new insights into the microbial ecology of deer-fed I. scapularis ticks and highlight the role of infection in shaping both microbiota and mycobiota communities. Full article

Serpentinite soils represent extreme environments characterized by deficiencies in essential nutrients (Ca, K, P, N), an unfavorable Ca/Mg ratio, low water retention, and elevated concentrations of several geogenic potentially toxic elements (PTEs). In particular, the study site, located in Sassello (Liguria, Italy) within the serpentinites of the High-Pressure–Low-Temperature (HP–LT) metaophiolites of the Voltri Massif, exhibited concentrations of chromium, nickel and cobalt exceeding Italian legal thresholds by up to one order of magnitude. This study aimed to assess fungal diversity and to isolate culturable strains naturally adapted to these challenging conditions for potential use in bioremediation. Culturable-dependent analyses allowed for the isolation of viable fungal strains, with Penicillium (52%), Umbelopsis (17.9%), and Aspergillus (11.6%) found as dominant genera. Additionally, metabarcoding analyses provided a broader view of fungal community composition, revealing the presence and distribution of both culturable and non-culturable taxa. The combined approach highlighted the richness of the serpentinite soil mycobiota and its role as a reservoir of PTE-resistant organisms. These findings offer new insights into the ecology of metal-rich soils and identify promising candidates for sustainable remediation strategies in PTE-contaminated environments. Full article

Fungal communities inhabiting leaves are key players in ecosystem processes but remain largely unexplored in Southern Hemisphere temperate forests. We characterized the foliar mycobiota of Nothofagus pumilio, a dominant deciduous tree in Patagonian forests, using ITS1 metabarcoding across seasons and tree health conditions. We detected 426 fungal taxa, including a 40-Amplicon Sequence Variant (ASV) core mycobiome persisting year-round. Fungal richness and biomass increased significantly in autumn, coinciding with leaf senescence, and community composition shifted markedly between seasons. Spring leaves were enriched in pathogens and basidiomycetous yeasts, while autumn leaves hosted more saprotrophs, ascomycetous yeasts, and lichen-associated fungi. Tree health had limited influence on overall community structure, but symptomatic trees showed higher ASV richness and specific indicator taxa, including the pathogen Trichosporiella multisporum and members of the Taphrinaceae and Saccotheciaceae families. Despite taxonomic turnover, ecological guilds remained relatively stable, suggesting functional redundancy. These findings reveal a seasonal successional trajectory in the foliar mycobiota of N. pumilio, from early-colonizing endophytes in spring to diverse decomposer assemblages in autumn. This study provides the first high-throughput insight into the structure and dynamics of foliar fungal communities in Southern Hemisphere temperate forests, offering a baseline for understanding microbial roles in forest health and resilience. Full article

Bark beetles (Coleoptera: Scolytinae) play a dual ecological role in forest ecosystems as disturbance agents and vectors of symbiotic fungi, including blue-stain taxa that affect wood quality and tree health. This study assessed fungal communities specific to four bark beetle species—Ips acuminatus (Gyllenhal, 1827), Ips sexdentatus (Börner, 1776), Ips typographus (Linnaeus, 1758), and Pityogenes chalcographus (Linnaeus, 1761)—colonizing Scots pine (Pinus sylvestris L.) in Slovakia. Fungal DNA was extracted from beetle surfaces and analyzed using ITS2 metabarcoding on the Illumina MiSeq platform to characterize the diversity and structure of associated mycobiota. Alpha- and beta-diversity analyses revealed a taxonomically and functionally rich fungal assemblage dominated by Ascomycota, comprising over one thousand operational taxonomic units. Fungal richness and diversity varied among beetle species: I. typographus and P. chalcographus supported the most diverse communities, I. sexdentatus harbored the least diverse assemblages, and I. acuminatus showed contrasting patterns depending on the index used. Beta-diversity analysis indicated that community composition was primarily structured by beetle species identity, with weaker effects of locality and sampling method. Ophiostomatoid fungi, particularly Geosmithia pallida (G. Sm.) M. Kolařík, Kubátová & Pažoutová, Ophiostoma distortum (R.W. Davidson) de Hoog & R.J. Scheff., and Ophiostoma minus (Hedgc.) Syd. & P. Syd., were consistently prevalent and formed the core mycobiome. Random forest classification and differential abundance analyses confirmed host-specific enrichment of several ophiostomatoid and yeast taxa. Yeasts (e.g., Kuraishia, Candida, Yamadazyma), saprotrophic molds (e.g., Penicillium, Davidiella), and the entomopathogen Beauveria bassiana (Bals.-Criv.) Vuill. also occurred frequently. These findings provide the first DNA-based evidence of host-specific fungal assemblages in Scots pine bark beetles in Slovakia and emphasize their ecological significance for beetle–fungus symbioses and pine forest health. Full article