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Keywords = organic matter in mineral fraction

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26 pages, 3046 KB  
Article
Distribution Patterns of Humus and Mineral Composition in Dark-Brown, Meadow, and Paddy Soils in Northeast China
by Donghui Dai, Haihang Sun, Yubao Huang, Jingwei Gao, Bowen Song, Haoyu Gao, Baoyi Lu and Shuai Wang
Agronomy 2025, 15(9), 2108; https://doi.org/10.3390/agronomy15092108 (registering DOI) - 31 Aug 2025
Abstract
This study aimed to investigate vertical variations in dissolved organic matter (DOM) properties, humus (HS) composition, humic acid (HA) characteristics, and clay mineral dynamics, with a particular focus on the vertical distribution of HS components and mineral composition across Dark-brown, Meadow, and Paddy [...] Read more.
This study aimed to investigate vertical variations in dissolved organic matter (DOM) properties, humus (HS) composition, humic acid (HA) characteristics, and clay mineral dynamics, with a particular focus on the vertical distribution of HS components and mineral composition across Dark-brown, Meadow, and Paddy soil profiles. Results indicated that: (1) DOM in all three soil types was predominantly endogenous, primarily derived from microbial metabolism with minimal contributions from plant residues. (2) Vertical trends in DOM carbon content (CDOM) were specific to soil type: in Dark-brown soil, CDOM slightly increased from the Ap to Bt layer, followed by a sharp increase in the C layer; Meadow soil exhibited a significant decrease in CDOM in the AB layer but remained relatively stable in other layers; Paddy soil showed a consistent decline in CDOM with increasing depth. (3) HS and its fractions exhibited vertical variability: Paddy soil showed higher HS content in surface layers; carbon contents of water-soluble substances, HA, and humic-extracted acid (CWSS, CHA, and CHE) decreased with depth in Dark-brown and Paddy soils, whereas they remained relatively stable in deeper layers of Meadow soil. (4) HA characteristics, including C/N ratio, functional groups, and aromaticity, were influenced by both depth and soil type: the Ap2 layer of Paddy soil effectively restricted the downward movement of organic matter; Fe3+ complexation played a key role in HA stabilization in Dark-brown soil; Meadow soil exhibited transitional HS properties. (5) Clay mineral assemblages were dominated by 2:1 type minerals (illite, smectite, illite–smectite interstratifications), showing distinct vertical weathering patterns: illite content decreased with depth due to hydrolysis, while proton-driven dissolution promoted kaolinite formation in surface layers, particularly in Dark-brown soil 2:1 minerals enhancing organic–mineral complexation in Meadow soil. The findings of this study provided a scientific basis for optimizing soil carbon pool management and offer insights into organic–mineral interactions that can enhance organic matter sequestration in agricultural soils. Full article
(This article belongs to the Section Soil and Plant Nutrition)
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18 pages, 3300 KB  
Article
Modes of Occurrence of Critical Elements (Li-Ga-Nb-Zr-REE) in the Late Paleozoic Coals from the Jungar Coalfield, Northern China: An Approach of Sequential Chemical Extraction
by Xiangyang Liu, Yanbo Zhang, Wei Zhao, Jian Wu and Jian Bai
Minerals 2025, 15(9), 889; https://doi.org/10.3390/min15090889 - 22 Aug 2025
Viewed by 287
Abstract
In recent years, recovering critical elements from coal has attracted considerable interest due to their significant potential and resulting advantages. A prime example is the coal-hosted Al-Ga-Li-REE deposit within the Jungar Coalfield of Inner Mongolia, northern China, where lithium (Li), gallium (Ga), and [...] Read more.
In recent years, recovering critical elements from coal has attracted considerable interest due to their significant potential and resulting advantages. A prime example is the coal-hosted Al-Ga-Li-REE deposit within the Jungar Coalfield of Inner Mongolia, northern China, where lithium (Li), gallium (Ga), and aluminum (Al) are successfully extracted from coal ash. However, the specific forms in which these elements exist, crucial for developing effective extraction methods, remain unquantified. This research investigated the distribution of Li, Ga, Nb, Zr, and rare earth elements (REEs) within the coal. The study employed a combination of analytical techniques, including inductively coupled plasma mass spectrometry (ICP-MS), sequential chemical extraction (SCE), scanning electron microscopy coupled with energy-dispersive X-ray spectrometry (SEM-EDS), and X-ray powder diffraction analysis (XRD). The analyzed coals exhibited enriched levels of Li, Ga, Zr, Nb, and REEs. Kaolinite and boehmite were the primary mineral constituents, along with minor amounts of calcite, pyrite, rutile, goyazite, and chlorite. Sequential chemical extraction revealed that Li and Ga are primarily associated with aluminosilicate phases (71.84%–84.39%) and, to a lesser degree, organic matter (12.15%–25.09%). Zirconium and Nb were also predominantly found within aluminosilicates (68.53%–95.96%). REEs occur mainly in carbonate (28.28%–60.78%), aluminosilicate (11.6%–33.08%), and organic (22.04%–29.42%) fractions. Full article
(This article belongs to the Section Mineral Geochemistry and Geochronology)
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28 pages, 2543 KB  
Article
Chemical Fractions of Soil Organic Matter and Their Interactions with Cu, Zn, and Mn in Vineyards in Southern Brazil
by Guilherme Wilbert Ferreira, Samya Uchoa Bordallo, Lucas Dupont Giumbelli, Zayne Valéria Santos Duarte, Gustavo Brunetto, George Wellington Bastos de Melo, Deborah Pinheiro Dick, Tadeu Luis Tiecher, Tales Tiecher and Cledimar Rogério Lourenzi
Agronomy 2025, 15(8), 1937; https://doi.org/10.3390/agronomy15081937 - 12 Aug 2025
Viewed by 378
Abstract
This study aimed to evaluate the impact of vineyard cultivation time and the use of metal-based fungicides on the chemical fractions of soil organic matter (SOM) as well as their interactions with Cu, Zn, and Mn in vineyard soils from Southern Brazil with [...] Read more.
This study aimed to evaluate the impact of vineyard cultivation time and the use of metal-based fungicides on the chemical fractions of soil organic matter (SOM) as well as their interactions with Cu, Zn, and Mn in vineyard soils from Southern Brazil with varying histories of fungicide application. Soil samples were collected in 2017 from vineyards aged 35, 37, and 39 years in the Serra Gaúcha region and 13, 19, and 36 years in the Campanha Gaúcha. In each region, samples were also collected from a non-anthropized reference area. In the oldest vineyards, sampling was conducted both within and between the rows of planting. Chemical fractionation of SOM was performed: non-humic substances (nHSs), particulate organic matter (POM), fulvic acid (FA), humic acid (HA), and humin (Hu). Fourier-transform infrared (FTIR) spectra were obtained for the HA, from which the aromaticity index (AI) and relative intensities (RIs) were calculated. In each SOM fraction, total organic carbon and the concentrations of Cu, Zn, and Mn were determined. Changes in land use alter the forms and distribution of soil organic carbon (SOC) and, consequently, of metals. Elemental and spectroscopic analyses of HS revealed that HA in the reference areas (forest and native grassland) was more aliphatic and had higher concentrations of polysaccharides, indicating fractions with a lower degree of stabilization. However, in vineyard areas, HA exhibited greater humification and aromaticity. Increasing cultivation time gradually increased soil carbon content, indicating that viticultural agroecosystems can sequester carbon in the soil over time, reaching levels similar to those observed in the reference areas. When comparing vineyard areas alone, with row collections and inter-row collections, we observed an increase in SOC levels in areas managed with cover crops, demonstrating the importance of conservation management in these areas. When evaluating the distribution of metals in these soils, we could observe the high affinity of Cu for the functional groups of SOM, with FA and HA responsible for the complexation of these elements in the soil. For Zn and Mn, the greatest accumulations were observed in the Hu fraction due to their greater affinity for soil clay minerals. This shows that soil organic matter is a key component in the complexation of metals in soils, reducing their availability and potential toxicity to cultivated plants. Full article
(This article belongs to the Special Issue Soil Organic Matter and Tillage)
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12 pages, 1240 KB  
Article
Pyrogenic Transformation of Soil Organic Matter in Larch Forests of the Discontinuous Permafrost Zone
by Anjelica Kondratova, Kazuto Sazawa, Naoya Wada and Semyon Bryanin
Forests 2025, 16(8), 1309; https://doi.org/10.3390/f16081309 - 11 Aug 2025
Viewed by 275
Abstract
The increasing frequency of wildfires in larch forests across the discontinuous permafrost zone of Eastern Eurasia heightens the vulnerability of soil organic matter (SOM) under a warming climate. However, post-fire SOM thermal stability in this frequently burned forest region remain poorly understood. We [...] Read more.
The increasing frequency of wildfires in larch forests across the discontinuous permafrost zone of Eastern Eurasia heightens the vulnerability of soil organic matter (SOM) under a warming climate. However, post-fire SOM thermal stability in this frequently burned forest region remain poorly understood. We assessed the long-term effects of wildfire on SOM structure and thermal stability in burned and unburned larch forests using complex analytical approaches: pyrolysis–gas chromatography/mass spectrometry (TMAH-py-GC/MS) and thermogravimetry/differential thermal analysis (TG/DTA). The focus was on the upper mineral soil horizon, where fire impacts may persist for decades. Sixteen years post-fire, total carbon content did not differ significantly between burned and control soils. Nonetheless, the molecular composition and thermal properties of SOM showed marked post-fire alterations. Burned soils exhibited higher proportions of lignin-derived compounds and reduced levels of short-chain fatty acid methyl esters. A lower degradation temperature (T50) and a higher thermal mass loss of labile fractions indicate a decrease in the thermal stability of SOM after fire. Our study shows that recurrent forest fires in larch forests of the Russian Far East decrease the thermal stability of soil organic matter, thereby increasing its vulnerability to subsequent fire degradation. Full article
(This article belongs to the Section Forest Soil)
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22 pages, 4572 KB  
Article
Effects of Organic Matter Volume Fraction and Fractal Dimension on Tensile Crack Evolution in Shale Using Digital Core Numerical Models
by Xin Liu, Yuepeng Wang, Tianjiao Li, Zhengzhao Liang, Siwei Meng and Licai Zheng
Fractal Fract. 2025, 9(8), 518; https://doi.org/10.3390/fractalfract9080518 - 8 Aug 2025
Viewed by 334
Abstract
Organic matter plays a vital role in shale reservoirs as both a hydrocarbon storage medium and migration pathway. However, the quantitative relationship between the microstructural features of organic matter and the macroscopic mechanical and failure behaviors of shale remains unclear due to rock [...] Read more.
Organic matter plays a vital role in shale reservoirs as both a hydrocarbon storage medium and migration pathway. However, the quantitative relationship between the microstructural features of organic matter and the macroscopic mechanical and failure behaviors of shale remains unclear due to rock heterogeneity and opacity. In this study, high-resolution three-dimensional digital core models of shale were reconstructed using Focused Ion Beam Scanning Electron Microscopy (FIB-SEM) imaging. The digital models captured the spatial distribution of silicate minerals, clay minerals, and organic matter. Numerical simulations of uniaxial tensile failure were performed on these models, considering variations in the organic matter volume fraction and fractal dimension. The results indicate that an increased organic matter volume fraction and fractal dimension are associated with lower tensile strength, simpler fracture geometry, and reduced acoustic emission activity. Tensile cracks preferentially initiate at interfaces between minerals with contrasting elastic moduli, especially between organic matter and clay, and then propagate and coalesce under loading. These findings reveal that both the volume fraction and fractal structure of organic matter are reliable predictors of tensile strength and damage evolution in shale. This study provides new microscale insights into shale failure mechanisms and offers guidance for optimizing hydraulic fracturing in organic-rich formations. Full article
(This article belongs to the Special Issue Applications of Fractal Dimensions in Rock Mechanics and Geomechanics)
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17 pages, 2432 KB  
Article
Fertilization Effects of Solid Digestate Treatments on Earthworm Community Parameters and Selected Soil Attributes
by Anna Mazur-Pączka, Kevin R. Butt, Marcin Jaromin, Edmund Hajduk, Mariola Garczyńska, Joanna Kostecka and Grzegorz Pączka
Agriculture 2025, 15(14), 1511; https://doi.org/10.3390/agriculture15141511 - 13 Jul 2025
Viewed by 1036
Abstract
An increasing number of soils, including those in EU countries, are affected by organic matter deficiency and the deterioration of nutrients, and using mineral fertilizers is often associated with negative environmental impacts. One of the basic recommendations for sustainable agriculture is to increase [...] Read more.
An increasing number of soils, including those in EU countries, are affected by organic matter deficiency and the deterioration of nutrients, and using mineral fertilizers is often associated with negative environmental impacts. One of the basic recommendations for sustainable agriculture is to increase the proportion of organic fertilizers in crop production and preserve soil biodiversity. An increasingly common organic fertilizer is biogas plant digestate, the physical and chemical properties of which depend primarily on the waste material used in biogas production. However, the fertilizer value of this additive and its effects on the soil environment, including beneficial organisms, remain insufficiently studied. Soil macrofauna, particularly earthworms, play a crucial role in soil ecosystems, because they significantly impact the presence of plant nutrients, actively participate in forming soil structures, and strongly influence organic matter dynamics. The present study was undertaken to determine the effects of fertilizing a silt loam soil with the solid fraction of digestate in monoculture crop production on earthworm community characteristics and the resulting changes in selected soil physicochemical properties. The research was conducted at a single site, so the original soil characteristics across the experimental plots were identical. Plots were treated annually (for 3 years; 2021–2023) with different levels of digestate: DG100 (100% of the recommended rate; 30 t ha−1), DG75 (75% of the recommended rate; 22.5 t ha−1), DG50 (15 t ha−1), DG25 (7.5 t ha−1), and CL (a control plot without fertilizer). An electrical method was used to extract earthworms. Those found at the study site belonged to seven species representing three ecological groups: Dendrodrilus rubidus (Sav.), Lumbricus rubellus (Hoff.), and Dendrobaena octaedra (Sav.) (epigeics); Aporrectodea caliginosa (Sav.), Aporrectodea rosea (Sav.), and Octolasion lacteum (Örley) (endogeics); and Lumbricus terrestris (L.) (anecics). Significant differences in the abundance and biomass of earthworms were found between the higher level treatments (DG100, DG75, and DG50), and the lowest level of fertilization and the control plot (DG25 and CL). The DG25 and CL plots showed an average of 24.7% lower earthworm abundance and 22.8% lower biomass than the other plots. There were no significant differences in the earthworm metrics between the plots within each of the two groups (DG100, DG75, and DG50; and DG25 and CL). The most significant influence on the average abundance and average biomass of Lumbricidae was probably exerted by soil moisture and the annual dosage of digestate. A significant increase in the abundance and biomass of Lumbricidae was shown at plots DG100, DG75, and DG50 in the three successive years of the experiment. The different fertilizer treatments were found to have different effects on selected soil parameters. No significant differences were found among the values of the analyzed soil traits within each plot in the successive years of the study. Full article
(This article belongs to the Section Agricultural Soils)
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18 pages, 1291 KB  
Article
Effect of Calcium Addition on Extracellular Enzymes and Soil Organic Carbon in Maize Rhizosphere Soils
by Zhaoquan He, Xue Shang and Xiaoze Jin
Agronomy 2025, 15(7), 1680; https://doi.org/10.3390/agronomy15071680 - 11 Jul 2025
Viewed by 468
Abstract
This study examined the regulatory mechanism of calcium (Ca) amendment on the dynamics of soil organic carbon (SOC) fractions and extracellular enzyme activities, elucidating the role of Ca in soil carbon cycling processes. A field experiment with maize was conducted, comparing treatments of [...] Read more.
This study examined the regulatory mechanism of calcium (Ca) amendment on the dynamics of soil organic carbon (SOC) fractions and extracellular enzyme activities, elucidating the role of Ca in soil carbon cycling processes. A field experiment with maize was conducted, comparing treatments of low calcium (T1), high calcium (T2), and a calcium-free control (CK). Measurements included inter-root SOC fractions—soluble organic carbon (DOC), microbial biomass carbon (MBC), and readily oxidizable organic carbon (ROC)—and the activities of the following extracellular enzymes: β-xylanase, β-glucosidase (β-glu), phenol oxidase (Phox), peroxidase (Pero), phosphatase (Phos), acetylaminoglucosidase (NAG), and urease. The main findings indicated the following: (1) Calcium addition significantly increased SOC content (115.04% and 99.22% higher in T1 and T2, respectively, than CK during the entire reproductive period) and enhanced microbial activity (elevated DOC and MBC). However, SOC decreased by 8.44% (T1) and 16.38% (T2) relative to CK in the late reproductive stage (irrigation–ripening), potentially reflecting microbial utilization (supported by the inverse correlation between SOC and MBC/DOC), and maize carbon reallocation during grain filling. (2) Calcium activated β-glu, Phox, Phos, NAG, and urease (p < 0.05), with pronounced increases in Phox (241.13 IU·L−1) and Phos (1126.65 U·L−1), indicating enhanced organic matter mineralization and phosphorus availability. (3) Calcium-driven MBC and ROC accumulation was associated with the positive regulation of Phox (path coefficient > 0.8) and the negative regulation of Phos. SOC was co-regulated by β-glu and Phos (R2 = 0.753). (4) Calcium dynamically optimized the short-term carbon distribution through enzyme activity while promoting long-term sequestration. Our study provides new evidence supporting multi-pathway interactions through which calcium mediates enzyme networks to influence the soil carbon cycle. The findings provide a theoretical foundation for calcium fertilizer management and soil carbon sequestration strategies in agriculture, advancing academic and practical goals for sustainable development and carbon neutrality. Full article
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18 pages, 1601 KB  
Article
Dual Role of Iron Oxides in Stabilizing Particulate and Mineral-Associated Organic Carbon Under Field Management in Paddies
by Hang Guo, Linxian Liao, Junzeng Xu, Wenyi Wang, Peng Chen, Zhihui Min, Yajun Luan, Yu Han and Keke Bao
Agriculture 2025, 15(13), 1385; https://doi.org/10.3390/agriculture15131385 - 27 Jun 2025
Viewed by 473
Abstract
The interactions between iron oxides and organic carbon within the particulate organic matter (POM) and mineral-associated organic matter (MAOM) fractions in paddy soils remain insufficiently understood, yet they are likely crucial for unlocking the carbon sequestration potential of these systems. In this study, [...] Read more.
The interactions between iron oxides and organic carbon within the particulate organic matter (POM) and mineral-associated organic matter (MAOM) fractions in paddy soils remain insufficiently understood, yet they are likely crucial for unlocking the carbon sequestration potential of these systems. In this study, we investigated the distribution of soil iron oxides and organic carbon within POM and MAOM fractions following 10 years of continuous irrigation and organic amendment management. We also examined the relationship between iron oxide transformation and these two SOC (soil organic carbon) fractions. Our results demonstrated that, under both flooded irrigation and controlled irrigation regimes, straw return or manure application effectively enhanced soil carbon sequestration, as evidenced by increases in both POM-C (POM-associated organic carbon) and MAOM-C (MAOM-associated organic carbon) contents. Meanwhile, exogenous carbon inputs promoted the transformation of crystalline iron oxides into short-range ordered iron oxides and iron oxide colloids, thereby enhancing the activation and complexation degree of soil iron oxides and facilitating the formation of Fe-bound organic carbon. Further regression analysis revealed that the activation degree of iron oxides had a stronger influence on POM-C, whereas the complexation degree had a greater effect on MAOM-C. This implies that exogenous carbon inputs are effective in promoting soil carbon sequestration in both flooded and water-saving irrigated rice paddies and that iron oxide transformation plays a key role in mediating this effect. Full article
(This article belongs to the Section Agricultural Soils)
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17 pages, 921 KB  
Article
Adsorption–Desorption Behaviour of Imidacloprid, Thiamethoxam, and Clothianidin in Different Agricultural Soils
by Gabriela Briceño, Graciela Palma, Heidi Schalchli, Paola Durán, Cesar Llafquén, Andrés Huenchupán, Carlos Rodríguez-Rodríguez and María Cristina Diez
Agriculture 2025, 15(13), 1380; https://doi.org/10.3390/agriculture15131380 - 27 Jun 2025
Viewed by 562
Abstract
This study evaluated the adsorption and desorption of imidacloprid (IMI), thiamethoxam (THM) and clothianidin (CLO) in an andisol (Freire soil) and an inceptisol (Chufquén soil) from southern Chile with different organic matter and clay contents. The soils had a slightly acidic pH and [...] Read more.
This study evaluated the adsorption and desorption of imidacloprid (IMI), thiamethoxam (THM) and clothianidin (CLO) in an andisol (Freire soil) and an inceptisol (Chufquén soil) from southern Chile with different organic matter and clay contents. The soils had a slightly acidic pH and clay and clay-loam textures. The tests were carried out at 20 °C with CaCl2 0.01 M as the electrolyte. Kinetic experiments were performed and isotherms were fitted to the pseudo-second-order, Elovich, Weber–Morris, Freundlich and Langmuir models. The kinetics were best described by the pseudo-second-order model (R2 > 0.99), indicating chemisorption; the rate was the highest for THM, although IMI and CLO achieved the highest retention capacities. The Chufquén samples, with lower organic matter but 52% clay, exhibited the highest Kf and qm of up to 12.4 and 270 mg kg−1, respectively, while the Kd (2.3–6.9 L kg−1) and Koc (24–167 L kg−1) coefficients revealed a moderate leaching risk. THM was the most mobile compound due to its high solubility. Desorption was partially irreversible (H = 0.48–1.48), indicating persistence in soil. FTIR analysis confirmed the interaction with O-Al-O/O-O-Si-O groups without alterations in the mineral structure. In the soils examined in this study, the clay fraction and variable-charge minerals, rather than organic matter, were more closely associated with the adsorption behaviour of these NNIs. Full article
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18 pages, 2348 KB  
Article
Sedimentary Differentiation Characteristics of Organic Matter and Phosphorus in Eutrophic Lake Special Zones
by Ya-Ping Liu, Di Song, Li-Xin Jiao, Jin-Long Zheng, Miao Zhang, Bo Yao, Jing-Yi Yan, Jian-Xun Wu and Xin Wen
Water 2025, 17(13), 1899; https://doi.org/10.3390/w17131899 - 26 Jun 2025
Viewed by 458
Abstract
Lake eutrophication, often driving harmful algal blooms (HABs) and ecosystem degradation, involves complex biogeochemical shifts within sediments. Changes in the sedimentary dissolved organic matter (DOM) composition during transitions from macrophyte to algal dominance are thought to critically regulate internal phosphorus (P) loading, yet [...] Read more.
Lake eutrophication, often driving harmful algal blooms (HABs) and ecosystem degradation, involves complex biogeochemical shifts within sediments. Changes in the sedimentary dissolved organic matter (DOM) composition during transitions from macrophyte to algal dominance are thought to critically regulate internal phosphorus (P) loading, yet the underlying mechanisms, especially in vulnerable plateau lakes like Qilu Lake, require further elucidation. This study investigated the coupled cycling of carbon (C) and P in response to historical ecosystem succession and anthropogenic activities using a 0–24 cm sediment core from Qilu Lake. We analyzed the total organic carbon (TOC), total phosphorus (TP), sequential P fractions, and DOM fluorescence characteristics (EEM-PARAFAC), integrated with chronological series data. The results revealed an asynchronous vertical distribution of TOC and TP, reflecting the shift from a submerged macrophyte-dominated, oligotrophic state (pre-1980s; high TOC, low TP, stable Ca-P dominance) to an algae-dominated, eutrophic state. The eutrophication period (~1980s–2010s) showed high TP accumulation (Ca-P and NaOH85 °C-P enrichment), despite a relatively low TOC (due to rapid mineralization), while recent surface sediments (post-2010s) exhibited a high TOC, but a lower TP following input controls. Concurrently, the DOM composition shifted from microbial humic-like dominance (C1) in deeper sediments to protein-like dominance (C3) near the surface. This study demonstrates that the ecosystem shift significantly regulates P speciation and mobility by altering sedimentary DOM abundance and chemical characteristics (e.g., protein-like DOM correlating negatively with Ca-P), reinforcing a positive feedback mechanism that sustains internal P loading and potentially exacerbates HABs. DOM molecular characteristics emerged as a key factor controlling the internal P cycle in Qilu Lake, providing critical insights for managing eutrophication in plateau lakes. Full article
(This article belongs to the Special Issue Water Environment Pollution and Control, 4th Edition)
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20 pages, 3756 KB  
Article
Reducing Cd Uptake by Wheat Through Rhizosphere Soil N-C Cycling and Bacterial Community Modulation by Urease-Producing Bacteria and Organo-Fe Hydroxide Coprecipitates
by Junqing Zhang, Shuangjiao Tang, Hao Wei, Lunguang Yao, Zhaojin Chen, Hui Han, Mingfei Ji and Jianjun Yang
Microorganisms 2025, 13(6), 1412; https://doi.org/10.3390/microorganisms13061412 - 17 Jun 2025
Viewed by 539
Abstract
The bioavailability of heavy metals is profoundly influenced by their interactions with active soil components (microorganisms, organic matter, and iron minerals). However, the effects of urease-producing bacteria combined with organo-Fe hydroxide coprecipitates (OFCs) on Cd accumulation in wheat, as well as the mechanisms [...] Read more.
The bioavailability of heavy metals is profoundly influenced by their interactions with active soil components (microorganisms, organic matter, and iron minerals). However, the effects of urease-producing bacteria combined with organo-Fe hydroxide coprecipitates (OFCs) on Cd accumulation in wheat, as well as the mechanisms underlying these effects, remain unclear. In this study, pot experiments integrated with high-throughput sequencing were employed to investigate the impacts of the urease-producing bacterial strain TJ6, ferrihydrite (Fh), and OFCs on Cd enrichment in wheat grains, alongside the underlying soil–microbial mechanisms. The results demonstrate that the strain TJ6-Fh/OFC consortium significantly (p < 0.05) reduced (50.1–66.7%) the bioavailable Cd content in rhizosphere soil while increasing residual Cd fractions, thereby decreasing (77.4%) Cd accumulation in grains. The combined amendments elevated rhizosphere pH (7.35), iron oxide content, and electrical conductivity while reducing (14.5–21.1%) dissolved organic carbon levels. These changes enhanced soil-colloid-mediated Cd immobilization and reduced Cd mobility. Notably, the NH4+ content and NH4+/NO3 ratio were significantly (p < 0.05) increased, attributed to the ureolytic activity of TJ6, which concurrently alkalinized the soil and inhibited Cd uptake via competitive ion channel interactions. Furthermore, the relative abundance of functional bacterial taxa (Proteobacteria, Gemmatimonadota, Enterobacter, Rhodanobacter, Massilia, Nocardioides, and Arthrobacter) was markedly increased in the rhizosphere soil. These microbes exhibited enhanced abilities to produce extracellular polymeric substances, induce phosphate precipitation, facilitate biosorption, and promote nutrient (C/N) cycling, synergizing with the amendments to immobilize Cd. This study for the first time analyzed the effect and soil science mechanism of urease-producing bacteria combined with OFCs in blocking wheat’s absorption of Cd. Moreover, this study provides foundational insights and a practical framework for the remediation of Cd-contaminated wheat fields through microbial–organic–mineral collaborative strategies. Full article
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21 pages, 3985 KB  
Article
Can the Urea Fatty Fraction Support Sustainable Agriculture in the Improvement of Soil Properties?
by Barbara Filipek-Mazur, Barbara Wiśniowska-Kielian, Leszek Wojnar and Krystyna Ciarkowska
Sustainability 2025, 17(12), 5529; https://doi.org/10.3390/su17125529 - 16 Jun 2025
Viewed by 383
Abstract
One of the assumptions of the circular economy is the introduction of nitrogen (N) fertilizers into soil in the form of by-products, such as urea fatty fraction (UFF). Another recommended sustainable agriculture treatment is to plough post-harvest straw into soil to improve the [...] Read more.
One of the assumptions of the circular economy is the introduction of nitrogen (N) fertilizers into soil in the form of by-products, such as urea fatty fraction (UFF). Another recommended sustainable agriculture treatment is to plough post-harvest straw into soil to improve the organic matter (OM) balance. We aimed to verify the efficacy of UFF as a N fertilizer applied with wheat or rape straw by examining its effect on the total carbon and N contents, pH, enzyme activity, OM mineralization and stabilization of soil. For this, we conducted a 120-day-long incubation experiment in which we compared the effect of UFF fertilizer applied with urea (both with and without a Ure inhibitor) on soil properties. Our main findings were that UFF acidified the soil (pH was lowered to 5.93) more than the urea (pH was above 6). Both fertilizers administered with straw slightly increased the soil carbon (to above 14 g kg1) and N contents (to around 1.4 g kg−1) compared to the control treatment and caused an increase in enzyme activity at the beginning of the experiment, followed by a gradual decrease. The UFF application accelerated the OM decomposition, although urea had a more stabilizing effect on the OM expressed by larger (above 16%) areas occupied by stable, aggregated OM than UFF (below 10%). We concluded that UFF can replace urea as an environmentally friendly N fertilizer, and that it has a similar effect to urea on soil properties. Full article
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28 pages, 59439 KB  
Article
The Middle–Late Permian to Late Cretaceous Mediterranean-Type Karst Bauxites of Western Iran: Authigenic Mineral Forming Conditions and Critical Raw Materials Potential
by Farhad Ahmadnejad, Giovanni Mongelli, Ghazal Rafat and Mohammad Sharifi
Minerals 2025, 15(6), 584; https://doi.org/10.3390/min15060584 - 29 May 2025
Viewed by 557
Abstract
The Sanandaj–Sirjan Zone and Zagros Fold–Thrust Belt in Iran host numerous Mediterranean-type karst bauxite deposits; however, their formation mechanisms and critical raw material potential remain ambiguous. This study combines mineralogical and geochemical analyses to explore (1) the formation of authigenic minerals, (2) the [...] Read more.
The Sanandaj–Sirjan Zone and Zagros Fold–Thrust Belt in Iran host numerous Mediterranean-type karst bauxite deposits; however, their formation mechanisms and critical raw material potential remain ambiguous. This study combines mineralogical and geochemical analyses to explore (1) the formation of authigenic minerals, (2) the role of microbial organic processes in Fe cycling, and (3) the assessment of their critical raw materials potential. Mineralogical analyses of the Late Cretaceous Daresard and Middle–Late Permian Yakshawa bauxites reveal distinct horizons reflecting their genetic conditions: Yakshawa exhibits a vertical weathering sequence (clay-rich base → ferruginous oolites → nodular massive bauxite → bleached cap), while Daresard shows karst-controlled profiles (breccia → oolitic-pisolitic ore → deferrified boehmite). Authigenic illite forms via isochemical reactions involving kaolinite and K-feldspar dissolution. Scanning electron microscopy evidence demonstrates illite replacing kaolinite with burial depth enhancing crystallinity. Diaspore forms through both gibbsite transformation and direct precipitation from aluminum-rich solutions under surface conditions in reducing microbial karst environments, typically associated with pyrite, anatase, and fluorocarbonates under neutral–weakly alkaline conditions. Redox-controlled Fe-Al fractionation governs bauxite horizon development: (1) microbial sulfate reduction facilitates Fe3⁺ → Fe2⁺ reduction under anoxic conditions, forming Fe-rich horizons, while (2) oxidative weathering (↑Eh, ↓moisture) promotes Al-hydroxide/clay enrichment in upper profiles, evidenced by progressive total organic carbon depletion (0.57 → 0.08%). This biotic–abiotic coupling ultimately generates stratified, high-grade bauxite. Finally, both the Yakshawa and Daresard karst bauxite ores are enriched in critical raw materials. It is worth noting that the overall enrichment appears to be mostly driven by the processes that led to the formation of the ores and not by the chemical features of the parent rocks. Divergent bauxitization pathways and early diagenetic processes—controlled by paleoclimatic fluctuations, redox shifts, and organic matter decay—govern critical raw material distributions, unlike typical Mediterranean-type deposits where parent rock composition dominates critical raw material partitioning. Full article
(This article belongs to the Section Mineral Deposits)
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23 pages, 3603 KB  
Article
Application of Iron-Bimetal Biochar for As and Cd Reduction and Soil Organic Carbon Preservation Under Varying Moisture
by Frank Stephano Mabagala, Tingjuan Wang, Qiufen Feng, Xibai Zeng, Chao He, Cuixia Wu, Nan Zhang and Shiming Su
Agriculture 2025, 15(11), 1114; https://doi.org/10.3390/agriculture15111114 - 22 May 2025
Cited by 1 | Viewed by 699
Abstract
The contamination of paddy soils with arsenic (As) and cadmium (Cd), coupled with the depletion of soil organic carbon (SOC), poses significant threats to rice yields and quality. There is an urgent need to identify a suitable soil additive capable of achieving simultaneous [...] Read more.
The contamination of paddy soils with arsenic (As) and cadmium (Cd), coupled with the depletion of soil organic carbon (SOC), poses significant threats to rice yields and quality. There is an urgent need to identify a suitable soil additive capable of achieving simultaneous heavy metal remediation and promotion of organic matter enrichment. The current study introduced two novel iron (Fe)/magnesium (Mg)-based bimetal-oxide-modified rice straw biochar (RSB), namely RSB-Fe/Mn and RSB-Fe/Mg. It evaluated their effectiveness in As/Cd immobilization and SOC preservation. An 8-week cultivation experiment was carried out in sequential drying–flooding moisture fluctuation conditions, with the soil pore water As/Cd (PWAs/Cd) and SOC fractions monitored. The mechanisms of As/Cd immobilization were investigated using Fourier Transform Infrared Spectroscopy (FTIR), X-ray Diffraction (XRD), and X-ray Photoelectron Spectroscopy (XPS) characterizations. Results revealed that PWAs and PWCd were reduced by up to 67.1% and 80.2% during the drying period and by 27.0% and 76.5% during the flooding period, respectively. Additionally, SOC content increased by 16.3% and 33.9% with RSB-Fe/Mn addition during the drying and flooding period, respectively, with an increase in the mineral-associated organic carbon (MAOC) fraction. The study proves that RSB-Fe/Mn and RSB-Fe/Mg are effective for soil As/Cd passivation and SOC stabilization, offering a promising solution to mitigate As and Cd pollution in paddy soils while maintaining soil quality. Full article
(This article belongs to the Section Agricultural Soils)
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23 pages, 4214 KB  
Article
The Impacts of Ethanol and Freeze–Thaw Cycling on Arsenic Mobility in a Contaminated Boreal Wetland
by Joseph Radford, Kimber E. Munford, Nadia Mykytczuk and Susan Glasauer
Soil Syst. 2025, 9(2), 37; https://doi.org/10.3390/soilsystems9020037 - 21 Apr 2025
Viewed by 589
Abstract
Pyrite-bearing waste rock from legacy gold mines is a source of elevated arsenic, sulfate, and iron in the surrounding environments due to leaching. Waste rock in environments that experience cold winters is of particular concern because freeze–thaw cycling may mobilize elements through degradation [...] Read more.
Pyrite-bearing waste rock from legacy gold mines is a source of elevated arsenic, sulfate, and iron in the surrounding environments due to leaching. Waste rock in environments that experience cold winters is of particular concern because freeze–thaw cycling may mobilize elements through degradation and release of organic matter and accelerated mineral weathering. In boreal zones, wetlands are common recipients of mine-waste run-off, and microbial processes in wetland soil may promote the retention of mobilized elements, such as arsenic. We investigated the impacts of freeze–thaw cycling and ethanol amendment on soil from an arsenic-contaminated wetland in anoxic microcosms. Ethanol-amended microcosms exhibited enhanced microbial sulfate reduction, leading to sulfide precipitation and increased retention of arsenic in the soil. Sequential extraction studies indicated a shift of arsenic into more stable sulfide-bound fractions. The addition of ethanol significantly increased the growth of Geobacter spp. and other select sulfate-reducing bacteria. Freeze–thaw cycling increased dissolved arsenic over short time periods only and had no detectable impacts on microbial activity. These findings suggest that the use of ethanol as an amendment to wetlands during spring thaw may enhance arsenic sequestration in mining-impacted soils and may provide a viable remediation strategy for cold-climate environments, where seasonal freeze–thaw cycling could otherwise contribute to arsenic mobilization. Full article
(This article belongs to the Special Issue Soil Bioremediation)
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