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Search Results (102)

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22 pages, 350 KB  
Review
Current Advances and Applications of Animal Models in SARS-CoV-2 Pathogenesis and Vaccine Development
by Li Wu, Yingying Tao, Xing Wu, Shaozhen Li, Rui Yang, Chengying Li, Yao Yao, Shijia Xu, Jianhong Shu, Yulong He and Huapeng Feng
Microorganisms 2025, 13(9), 2009; https://doi.org/10.3390/microorganisms13092009 - 28 Aug 2025
Viewed by 660
Abstract
COVID-19 is the most widespread emerging infectious disease in humans, recently caused by the SARS-CoV-2 virus. Understanding the pathogenesis and development of efficient vaccines is crucial for the prevention and control of this emerging disease. SARS-CoV-2 viruses have widespread hosts, including humans, domesticated/companion [...] Read more.
COVID-19 is the most widespread emerging infectious disease in humans, recently caused by the SARS-CoV-2 virus. Understanding the pathogenesis and development of efficient vaccines is crucial for the prevention and control of this emerging disease. SARS-CoV-2 viruses have widespread hosts, including humans, domesticated/companion animals (cats, dogs), specific farmed animals (minks), specific wildlife (white-tailed deer), and laboratory animal models. Bats are considered the original reservoir, and pangolins may be important intermediate hosts. Suitable animal models play an important role in studying the pathogenicity and evaluation of vaccines and antiviral drugs during the preclinical stage. In this review, we summarized the animal models and potential animal models for the research of SARS-CoV-2 pathogenesis, vaccine and antiviral drugs development, including transgenic mice, cats, hamsters, nonhuman primates, ferrets, and so on. Our summary provides the important information to select the animals used for a specific purpose and facilitates the development of novel vaccines and antivirals to prevent and control COVID-19. Full article
(This article belongs to the Collection Advances in SARS-CoV-2 Infection)
33 pages, 732 KB  
Article
China’s Legal Protection System for Pangolins: Past, Present, and Future
by Da Su, Kai Wu and Anzi Nie
Animals 2025, 15(16), 2422; https://doi.org/10.3390/ani15162422 - 18 Aug 2025
Viewed by 749
Abstract
This article examines the historical evolution, contemporary dynamics, and future trajectory of China’s legal and judicial framework for pangolin protection. By reviewing over seventy years of regulatory changes, case law, and policy implementation, it outlines three distinct phases: the early emphasis on pangolins [...] Read more.
This article examines the historical evolution, contemporary dynamics, and future trajectory of China’s legal and judicial framework for pangolin protection. By reviewing over seventy years of regulatory changes, case law, and policy implementation, it outlines three distinct phases: the early emphasis on pangolins as medicinal and export resources (1949–1989); the phase of conflicted protection and utilization under regulatory expansion (1989–2020); and the post-2020 shift toward judicial activism and ecological civil litigation. We then highlight the long-standing contradiction between legislative protection and continued medicinal use, particularly the centuries-old use of pangolins and their derivatives in traditional Chinese medicine, a practice still acknowledged within certain state policies and regulatory frameworks, showing how these inconsistencies enabled persistent illegal exploitation despite regulatory controls. Through systematic analysis of public court records and case databases, the policy historical records reveal a marked increase in environmental public interest litigation since 2020. These lawsuits, often attached to criminal prosecutions, signal a transition from merely punitive approaches to restorative ones—anchored in ecological valuation of species and their services. Case studies illustrate how courts now impose not only wildlife resource loss fees, but also punitive damages and compensation for ecological service function loss. The article will elaborate in detail on the distinctions and interrelations among these types of compensation. The landmark Case No.17 also demonstrates this paradigm shift, wherein courts recognized pangolins’ role in balancing forest ecosystems. However, significant challenges persist. Valuation methodologies lack uniform standards; while the ecological value of pangolins has been recognized, their inherent value as individuals has not been emphasized within the legal system; judicial discretion varies across jurisdictions; and public interest organizations remain underutilized in litigation. Moreover, while the crackdown on organized crime succeeded in curbing mass trafficking, smaller-scale violations tied to cultural consumption for medicine use persist. The article concludes that judicial innovations, such as ecological judicial restoration bases and integration into China’s draft Ecological Environment Code, offer promising pathways forward. To enhance efficacy, it calls for standardization in ecological valuation, strengthened civil society participation, and nuanced differentiation in penal strategies between minor and serious offenses. This study ultimately positions judicial reform as the cornerstone of China’s evolving pangolin conservation strategy. Full article
(This article belongs to the Special Issue Wild Animal Welfare: Science, Ethics and Law)
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10 pages, 3612 KB  
Communication
Comparison of Habitat Selection Models Between Habitat Utilization Intensity and Presence–Absence Data: A Case Study of the Chinese Pangolin
by Hongliang Dou, Ruiqi Gao, Fei Wu and Haiyang Gao
Biology 2025, 14(8), 976; https://doi.org/10.3390/biology14080976 - 1 Aug 2025
Viewed by 344
Abstract
Identifying habitat characteristics is essential for conserving critically endangered species. When quantifying species habitat characteristics, ignoring data types may lead to misunderstandings about species’ specific habitat requirements. This study focused on the critically endangered Chinese pangolin in Guangdong Province, China, and divided the [...] Read more.
Identifying habitat characteristics is essential for conserving critically endangered species. When quantifying species habitat characteristics, ignoring data types may lead to misunderstandings about species’ specific habitat requirements. This study focused on the critically endangered Chinese pangolin in Guangdong Province, China, and divided the study area into 600 m × 600 m grids based on its average home range. The burrow number within each grid was obtained through line transect surveys, with burrow numbers/line transect lengths used as direct indicators of habitat utilization intensity. The relationships with sixteen environmental variables, which could be divided into three categories, including topographic, human disturbance and land cover composition, were quantified using the GAM method. We also converted continuous data into binary data (0, 1), constructed GAMs and compared them with habitat utilization intensity models. Our results indicate that the habitat utilization intensity model identified profile curvature and slope as primary factors, showing a nonlinear response to profile curvature (Edf = 5.610, p = 0.014) and a positive relationship with slope (Edf = 1.000, p = 0.006). The presence–absence model emphasized distance to water (Edf = 1.000, p = 0.014), slope (Edf = 1.709, p = 0.043) and aspect (Edf = 2.000, p = 0.026). The intensity model explained significantly more deviance, captured complex nonlinear relationships and supported higher model complexity without overfitting. This study demonstrates that habitat utilization intensity data provides a more ecologically informative basis for in situ conservation (e.g., identifying core habitats), and the process from habitat selection to habitat utilization should be integrated to reveal species’ habitat characteristics. Full article
(This article belongs to the Section Conservation Biology and Biodiversity)
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17 pages, 3482 KB  
Article
Chinese Pangolins in China Demonstrate Regional Differences in Burrow Habitat Selection
by Dongling Liang, Xinrui Tang, Yilong Chen, Fei Xi, Shibao Wu and Fuhua Zhang
Animals 2025, 15(14), 2093; https://doi.org/10.3390/ani15142093 - 16 Jul 2025
Viewed by 405
Abstract
Knowledge of the habitat characteristics of endangered species is an important basis for in situ conservation, release-site selection, and habitat modification. Although the Chinese pangolin (Manis pentadactyla) is one of the world’s most endangered species, little is known about its habitat [...] Read more.
Knowledge of the habitat characteristics of endangered species is an important basis for in situ conservation, release-site selection, and habitat modification. Although the Chinese pangolin (Manis pentadactyla) is one of the world’s most endangered species, little is known about its habitat preferences, and the results of past studies differ greatly. To clarify the habitat characteristics of the Chinese pangolin, we conducted habitat surveys in Guangdong, Jiangxi, and Zhejiang provinces of China using the transect method. A total of 520 burrow sites of Chinese pangolins were recorded in three study areas. The resulting data were analyzed using a generalized additive model, principal coordinate analysis, and Kruskal–Wallis tests. Nine ecological factors (elevation, slope, soil type, canopy coverage, surface coverage, number of trees, number of logs, tree diameter at breast height, and distance to a settlement) were found to affect pangolins’ distribution. Burrows were preferentially distributed at elevations of 50–150 m (62.3%), in silty soil (88.1%), on 20–40° slopes (83.3%), within young and medium-aged broadleaved forests with a canopy coverage exceeding 70% (65.8%), and close to water (less than 300 m). Among the three study regions, pangolin habitats differed significantly in seven environmental factors: elevation, canopy coverage, surface coverage, number of trees, distance to water, distance to a road, and distance to a settlement. Our findings imply that the Chinese pangolin appears to tolerate a broad range of ecological characteristics; however, food resources may be the key factor affecting its habitat selection, and other factors may indirectly affect its distribution by affecting food abundance. Finally, aside from hunting, a low level of human disturbance does not affect the presence of this species. Full article
(This article belongs to the Section Ecology and Conservation)
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14 pages, 1270 KB  
Article
The Activity Rhythm and Home Range Characteristics of Released Chinese Pangolins (Manis pentadactyla)
by Haochen Huang, Zhenhui Shen, Xinhao Zhang, Hongyi Cheng, Chungang Xie and Rongquan Zheng
Animals 2025, 15(11), 1658; https://doi.org/10.3390/ani15111658 - 4 Jun 2025
Viewed by 675
Abstract
As a mammal with unique ecological habits, the Chinese pangolin, Manis pentadactyla, exhibits nocturnal behavior and has a hidden, cave-dwelling lifestyle. Severe habitat degradation and fragmentation have led to a rapid decline in its wild population. Moreover, the immature state of artificial breeding [...] Read more.
As a mammal with unique ecological habits, the Chinese pangolin, Manis pentadactyla, exhibits nocturnal behavior and has a hidden, cave-dwelling lifestyle. Severe habitat degradation and fragmentation have led to a rapid decline in its wild population. Moreover, the immature state of artificial breeding technology restricts the availability of research samples, particularly with regard to behavioral and ecological data. This makes it extremely difficult to continuously monitor the pangolin’s ecological habits and population dynamics for a long time. The comprehensive research archive is yet to be established, greatly limiting the in-depth understanding of this species’ ecological behavior. To mitigate this data shortage, this study installed GPS positioning and accelerometer technology devices on five Chinese pangolins that were rescued from Zhejiang and released into the wild. Activity rhythms and home ranges were then analyzed based on the collected data. The results showed that all the five released Chinese pangolins were active in the wild and survived throughout the tracking period (21–72 days). The pangolins were mainly active at night, with activity starting after 18:00 and being mainly concentrated between 22:00 and 4:00. The home range of the Chinese pangolins based on MCP was 777.41 ± 426.26 hm2, and the core range based on KDE was 596.21 ± 265.58 hm2 (50% KDE). This result confirms that high-frequency GPS positioning combined with accelerometer data can effectively determine the home range sizes, habitat utilization, and fine-scale activity rhythms of wild-released pangolins. Full article
(This article belongs to the Section Mammals)
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16 pages, 12995 KB  
Article
DEM Study and Field Experiments on Coupling Bionic Subsoilers
by Zihe Xu, Hongyan Qi, Lidong Wang, Shuo Wang, Xuanting Liu and Yunhai Ma
Biomimetics 2025, 10(5), 306; https://doi.org/10.3390/biomimetics10050306 - 11 May 2025
Viewed by 596
Abstract
Subsoiling is an effective tillage method for breaking up the plough pan and reducing soil bulk density. However, subsoilers often encounter challenges such as high draft resistance and excessive energy consumption during operation. In this study, the claw toes of the badger and [...] Read more.
Subsoiling is an effective tillage method for breaking up the plough pan and reducing soil bulk density. However, subsoilers often encounter challenges such as high draft resistance and excessive energy consumption during operation. In this study, the claw toes of the badger and the scales of the pangolin were selected as bionic prototypes, based on which coupling bionic subsoilers were designed. The discrete element method (DEM) was used to simulate and analyze the interactions between soil and both the standard subsoiler and coupling bionic subsoilers. Field experiments were conducted to validate the simulation results. The simulation results showed that the coupling bionic subsoilers reduced the draft force by 7.70–16.02% compared to the standard subsoiler at different working speeds. Additionally, the soil disturbance coefficient of the coupling bionic subsoilers decreased by 5.91–13.57%, and the soil bulkiness was reduced by 2.84–18.41%. The field experiment results showed that coupling bionic subsoilers reduced the average draft force by 11.06% and decreased the soil disturbance area. The field experiments validated the accuracy of DEM simulation results. This study provides valuable insights for designing more efficient subsoilers. Full article
(This article belongs to the Special Issue Drag Reduction through Bionic Approaches)
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13 pages, 2394 KB  
Article
Molecular Epidemiology of SARS-CoV-2 in Bangladesh
by Abu Sayeed Mohammad Mahmud, Patiyan Andersson, Dieter Bulach, Sebastian Duchene, Anders Goncalves da Silva, Chantel Lin, Torsten Seemann, Benjamin P. Howden, Timothy P. Stinear, Tarannum Taznin, Md. Ahashan Habib, Shahina Akter, Tanjina Akhtar Banu, Md. Murshed Hasan Sarkar, Barna Goswami, Iffat Jahan and Md. Salim Khan
Viruses 2025, 17(4), 517; https://doi.org/10.3390/v17040517 - 1 Apr 2025
Viewed by 958
Abstract
Mutation is one of the most important drivers of viral evolution and genome variability, allowing viruses to potentially evade host immune responses and develop drug resistance. In the context of COVID-19, local genomic surveillance of circulating virus populations is therefore critical. The goals [...] Read more.
Mutation is one of the most important drivers of viral evolution and genome variability, allowing viruses to potentially evade host immune responses and develop drug resistance. In the context of COVID-19, local genomic surveillance of circulating virus populations is therefore critical. The goals of this study were to describe the distribution of different SARS-CoV-2 lineages, assess their genomic differences, and infer virus importation events in Bangladesh. We individually aligned 1965 SARS-CoV-2 genome sequences obtained between April 2020 and June 2021 to the Wuhan-1 sequence and used the resulting multiple sequence alignment as input to infer a maximum likelihood phylogenetic tree. Sequences were assigned to lineages as described by the hierarchical Pangolin nomenclature scheme. We built a phylogeographic model using the virus population genome sequence variation to infer the number of virus importation events. We observed thirty-four lineages and sub-lineages in Bangladesh, with B.1.1.25 and its sub-lineages D.* (979 sequences) dominating, as well as the Beta variant of concern (VOC) B.1.351 and its sub-lineages B.1.351.* (403 sequences). The earliest B.1.1.25/D.* lineages likely resulted from multiple introductions, some of which led to larger outbreak clusters. There were 570 missense mutations, 426 synonymous mutations, 18 frameshift mutations, 7 deletions, 2 insertions, 10 changes at start/stop codons, and 64 mutations in intergenic or untranslated regions. According to phylogeographic modeling, there were 31 importation events into Bangladesh (95% CI: 27–36). Like elsewhere, Bangladesh has experienced distinct waves of dominant lineages during the COVID-19 pandemic; this study focuses on the emergence and displacement of the first wave-dominated lineage, which contains mutations seen in several VOCs and may have had a transmission advantage over the extant lineages. Full article
(This article belongs to the Section Coronaviruses)
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41 pages, 19117 KB  
Review
Chains of Commerce: A Comprehensive Review of Animal Welfare Impacts in the International Wildlife Trade
by Helen Lambert, Angie Elwin, Délagnon Assou, Mark Auliya, Lauren A. Harrington, Alice C. Hughes, Aniruddha Mookerjee, Tom Moorhouse, Gohar A. Petrossian, Evan Sun, Clifford Warwick, Özgün Emre Can and Neil D’Cruze
Animals 2025, 15(7), 971; https://doi.org/10.3390/ani15070971 - 27 Mar 2025
Cited by 2 | Viewed by 2921
Abstract
The commercial wildlife trade involves billions of animals each year, consumed for various purposes, including food, fashion, entertainment, traditional medicine, and pets. The experiences of the animals involved vary widely, with negative welfare states being commonplace. To highlight the broad scope of animal [...] Read more.
The commercial wildlife trade involves billions of animals each year, consumed for various purposes, including food, fashion, entertainment, traditional medicine, and pets. The experiences of the animals involved vary widely, with negative welfare states being commonplace. To highlight the broad scope of animal welfare impacts across the commercial wildlife trade, we present ten case studies featuring a range of species traded globally for different purposes: (1) Ball pythons captured and farmed to serve as pets; (2) Zebrafish captive bred to serve as pets; (3) African Grey Parrots taken from the wild for the pet industry; (4) Sharks de-finned for traditional medicine; (5) Pangolins hunted for traditional medicine; (6) Crickets farmed for food and feed; (7) Frogs wild-caught for the frog-leg trade; (8) Crocodilians killed for their skins; (9) Lions farmed and killed for tourism; and (10) Elephants held captive for tourism. The case studies demonstrate that wild animals commercially traded can suffer from negative welfare states ranging from chronic stress and depression to frustration and extreme hunger. The individuals involved range from hundreds to billions, and their suffering can last a lifetime. Given the welfare issues identified and the growing recognition and scientific evidence for animal sentience, we propose reducing and redirecting consumer demand for these consumptive wildlife practices that negatively impact animals. Full article
(This article belongs to the Section Animal Welfare)
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14 pages, 7269 KB  
Article
Experimental Study of Complex Coupled Deep Tillage Mechanism and Drag Reduction
by Lihe Wang, Yonglai Zhao, Ying Li, Xu Zhang and Hongjie Su
Appl. Sci. 2025, 15(5), 2551; https://doi.org/10.3390/app15052551 - 27 Feb 2025
Viewed by 482
Abstract
The high resistance and energy consumption of deep tillage operations reduce the economic benefits of conservation tillage. This study is based on an air-assisted wing-shaped deep tillage subsoiler previously developed by the research team. Biomimetic elements from the geometric structures of badger claws [...] Read more.
The high resistance and energy consumption of deep tillage operations reduce the economic benefits of conservation tillage. This study is based on an air-assisted wing-shaped deep tillage subsoiler previously developed by the research team. Biomimetic elements from the geometric structures of badger claws and pangolin scales were incorporated into the coupling design applied to the subsoiler tip of the air-assisted wing-shaped deep tillage subsoiler. To better explore the key parameters affecting the reduction in the resistance and wear in the coupled biomimetic deep tillage subsoiler and to identify new variations in the complex coupled biomimetic structure during deep tillage, field experiments were conducted. The results show that, under the experimental conditions of an air pressure of 2.2 MPa, a working speed of 3.31 km/h, and a subsoiler width of 150 mm, the deep tillage specific resistance (SDF) reached 3.12, demonstrating significant drag reduction effects. This research provides a new theoretical basis and practical guidance for the design and application of deep tillage subsoilers. Full article
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18 pages, 8373 KB  
Article
Utilization of TiN and the Texture of Bionic Pangolin Scales to Improve the Wear Resistance of Cast Steel 20Mn Metal
by Wenwen Zhang, Mingyuan Zhang, Xingliang Dong, Yuanzhe Huang and Shukun Cao
Biomimetics 2025, 10(1), 42; https://doi.org/10.3390/biomimetics10010042 - 10 Jan 2025
Cited by 1 | Viewed by 1356
Abstract
This research centers around cast steel 20Mn, which is the material utilized for the ear-picking roller of a corn harvester. The study delves into methods of enhancing its hydrophobicity and wear resistance. Fiber laser-processing technology was employed to fabricate pangolin bionic micro-textures on [...] Read more.
This research centers around cast steel 20Mn, which is the material utilized for the ear-picking roller of a corn harvester. The study delves into methods of enhancing its hydrophobicity and wear resistance. Fiber laser-processing technology was employed to fabricate pangolin bionic micro-textures on the material surface, and PVD technology was utilized to deposit a TiN coating. The wear resistance of the modified surface was investigated via the reciprocating dry sliding wear method, while its hydrophobicity was concurrently examined. The results demonstrate that the laser texturing technology and TiN coating managed to reduce the friction coefficient of the sample surface by 20% and 30.9%, respectively. This can be chiefly attributed to the significant effects of the modified surface in augmenting hardness, diminishing the contact area of the friction surface, lowering shear stress, and entrapping wear debris. When the pangolin texture and TiN coating work in concert, the abrasive and fatigue wear between the two surfaces is conspicuously mitigated, and the friction coefficient is reduced by 38.09%. Moreover, the experiment also reveals that a superhydrophobic surface can be achieved by fabricating the pangolin micro-textures. Full article
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18 pages, 3846 KB  
Article
Comparative Metagenomic Analysis of the Gut Microbiota of Captive Pangolins: A Case Study of Two Species
by Zhengyu Dai, Bowen Xie, Chungang Xie, Jinsuo Xiang, Xinmei Wang, Jing Li, Rongquan Zheng and Yanni Wang
Animals 2025, 15(1), 57; https://doi.org/10.3390/ani15010057 - 30 Dec 2024
Cited by 2 | Viewed by 1505
Abstract
Pangolins, one of the most trafficked mammals, face significant health challenges in captivity, including digestive disorders and immune dysfunctions. These issues are closely linked to alterations in their gut microbiota, which play vital roles in the host metabolism, immunity, and overall health. This [...] Read more.
Pangolins, one of the most trafficked mammals, face significant health challenges in captivity, including digestive disorders and immune dysfunctions. These issues are closely linked to alterations in their gut microbiota, which play vital roles in the host metabolism, immunity, and overall health. This study investigated the differences in the gut microbiota composition and function between two pangolin species, Chinese pangolins (Manis pentadactyla) and Malayan pangolins (Manis javanica), under identical captive conditions to better understand their ecological adaptability and health implications. Using metagenomic sequencing, fecal samples from eight adult captive pangolins were analyzed, including four male Malayan pangolins and three male and one female Chinese pangolins. Comparative analyses of the alpha and beta diversities, microbial community structure, and functional profiles were performed. Both species harbored gut microbiota dominated by Firmicutes, Bacteroidetes, and Proteobacteria. However, the Chinese pangolins exhibited higher microbial diversity (Shannon index, p = 0.042; Simpson index, p = 0.037) and lower relative abundance of Proteobacteria compared with the Malayan pangolins. A functional analysis revealed significant differences in the metabolic pathways, where the Chinese pangolins demonstrated a higher potential for fiber degradation, whereas the Malayan pangolins exhibited elevated levels of antibiotic resistance genes and pathogenic taxa, such as Escherichia coli. These findings suggest that captivity duration and environmental stress likely contribute to the observed differences, with the Malayan pangolins experiencing greater dysbiosis due to longer captivity periods. This study provides valuable insights into the role of gut microbiota in pangolin health and offers a foundation for improving conservation strategies and captive care protocols. Full article
(This article belongs to the Special Issue Protecting Endangered Species: Second Edition)
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14 pages, 2561 KB  
Article
Assessing Species Richness with Camera Trap Surveys During Five Years of Large-Scale Mining Disruptions
by Ruan W. Higgs and Francois Deacon
Wild 2024, 1(1), 82-95; https://doi.org/10.3390/wild1010007 - 2 Dec 2024
Viewed by 1919
Abstract
In the Northern Cape Province of South Africa, an investigation was launched into the impact of large-scale open-pit mining on wildlife ecology and populations, more specifically on the animal species richness and detection rates across different vegetation types. Using camera traps, we monitored [...] Read more.
In the Northern Cape Province of South Africa, an investigation was launched into the impact of large-scale open-pit mining on wildlife ecology and populations, more specifically on the animal species richness and detection rates across different vegetation types. Using camera traps, we monitored a 43,000-hectare area, which included active mining areas and adjacent lands, over a period of five years (2020–2024). Data on 44 animal species ranging from small mammals to large megaherbivores were collected, with a large variation in species richness across the study site being observed. The detection of species that are of conservation concern, such as the vulnerable Temminck’s ground pangolin (Smutsia temminckii) and endangered mountain reedbuck (Redunca fulvorufula), highlighted additional potential risks that mining activities pose to biodiversity in the area, emphasizing the importance of monitoring biodiversity in areas that are impacted by large-scale anthropogenic and mining activities. Furthermore, the results suggest that some areas may require a more targeted approach to conservation in order to mitigate the disruptive effect of mining. Benchmarking the species present and proving the presence of endangered and vulnerable species prove the successful first steps into understanding habitat disruption caused by mining activities and will guide future conservation and management efforts. Full article
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11 pages, 1373 KB  
Article
Emerging SARS-CoV-2 Variants in Uganda in the Era of COVID-19 Vaccination
by Nicholas Bbosa, Ronald Kiiza, Alfred Ssekagiri, Hamidah Suubi Namagembe, Stella Esther Nabirye, Danstan Kabuuka, Cleophous Rwankindo, Annet Kisakye, Yonas T. Woldemariam, Sylvia Kusemererwa, Terry A. Ongaria, Ayoub Kakande, Andrew Abaasa, Geofrey Kimbugwe, Henry Kyobe Bosa, Alfred Driwale, Jason M. Mwenda, Archibald K. Worwui, James Humphreys, Sandra Cohuet, Alison M. Elliott, Eugene Ruzagira, Pontiano Kaleebu and Deogratius Ssemwangaadd Show full author list remove Hide full author list
Viruses 2024, 16(12), 1860; https://doi.org/10.3390/v16121860 - 29 Nov 2024
Cited by 2 | Viewed by 1576
Abstract
The emergence of SARS-CoV-2 variants has heightened concerns about vaccine efficacy, posing challenges in controlling the spread of COVID-19. As part of the COVID-19 Vaccine Effectiveness and Variants (COVVAR) study in Uganda, this study aimed to genotype and characterize SARS-CoV-2 variants in patients [...] Read more.
The emergence of SARS-CoV-2 variants has heightened concerns about vaccine efficacy, posing challenges in controlling the spread of COVID-19. As part of the COVID-19 Vaccine Effectiveness and Variants (COVVAR) study in Uganda, this study aimed to genotype and characterize SARS-CoV-2 variants in patients with COVID-19-like symptoms who tested positive on a real-time PCR. Amplicon deep sequencing was performed on 163 oropharyngeal/nasopharyngeal swabs collected from symptomatic patients. Genome assembly, lineage classification and phylogenetic analysis was performed using the Edge Bioinformatics pipeline version 2.4.0, Pangolin version 4.3.1 and iqtree version 2.3.6 software respectively. Of the 163 deep sequences analyzed between April 2023 and March 2024, the most common were XBB.1 lineages and sublineages (113, 69.3%), followed by JN.1* (12, 7.4%), XBB.2* (11, 6.7%) and FL* (11, 6.7%), EG* (7, 4.3%), others (BQ.1.1, FY.4.1, FY.4.1.2, GY.2.1, HK.27.1) (5, 3.1%) and CM* (4, 2.5%). XBB.1* dominated from April to July 2023; thereafter, other variants, including JN.1* were increasingly detected. There was no statistically significant association between vaccine status and lineage assignment (Fisher’s exact test, p-value = 0.994). Our findings showed that the Omicron variant, specifically the XBB.1* lineage, was the dominant circulating virus. However, the emergence of the JN.1 variant that exhibits a significant spike protein mutation profile could impact COVID-19 transmission in Uganda. Full article
(This article belongs to the Section Coronaviruses)
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21 pages, 16589 KB  
Article
Viscosity Reduction and Drag Reduction Performance Analysis of Bionic Excavator Buckets Based on Discrete Element Method
by Guomin Liu, Xuekai Han, Ziyang Wang, Kun Wang, Zhongsong Zhang and Zenan Duan
Biomimetics 2024, 9(11), 686; https://doi.org/10.3390/biomimetics9110686 - 9 Nov 2024
Cited by 4 | Viewed by 1685
Abstract
With the aiming of solving problems with the existing ordinary excavator buckets used in the process of operations (such as heavy digging resistance, ease of adhesion, and others), seven types of bionic buckets and a prototype bucket were designed, based on the contractile-state [...] Read more.
With the aiming of solving problems with the existing ordinary excavator buckets used in the process of operations (such as heavy digging resistance, ease of adhesion, and others), seven types of bionic buckets and a prototype bucket were designed, based on the contractile-state curve of the earthworm head and the contour curve of the pangolin claw toe. The digging processes of the buckets were simulated using the discrete element method. The results show that, compared with the prototype buckets, all seven types of bionic buckets have significant drag reduction effects at the same digging depth, and the drag reduction effects increase with the decrease of digging speed. Among them, the composite bionic bucket-3 has the highest drag reduction rate, of 14.469% when the digging speed is 2 rad/s. At the same digging speed, different buckets disturb the soil particles to different degrees, and the bionic buckets disturb the soil more significantly compared with the prototype buckets. By conducting contact force field analysis for the buckets, it was shown that the bionic corrugated structure brings the bucket surface into incomplete contact with the soil particles, where the contact is on small areas or even on points, so that the relative velocity between the soil and the shovel body increases under the same driving force, which reduces the excavation resistance. This study provides a theoretical and design basis. Full article
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28 pages, 4936 KB  
Article
An Immunoinformatic Approach for Identifying and Designing Conserved Multi-Epitope Vaccines for Coronaviruses
by Yu Chuan Ong, Bimo Ario Tejo and Wei Boon Yap
Biomedicines 2024, 12(11), 2530; https://doi.org/10.3390/biomedicines12112530 - 5 Nov 2024
Viewed by 2014
Abstract
Background/Objectives: The COVID-19 pandemic caused by the novel severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) virus has exposed the vulnerabilities and unpreparedness of the global healthcare system in dealing with emerging zoonoses. In the past two decades, coronaviruses (CoV) have been responsible for [...] Read more.
Background/Objectives: The COVID-19 pandemic caused by the novel severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) virus has exposed the vulnerabilities and unpreparedness of the global healthcare system in dealing with emerging zoonoses. In the past two decades, coronaviruses (CoV) have been responsible for three major viral outbreaks, and the likelihood of future outbreaks caused by these viruses is high and nearly inevitable. Therefore, effective prophylactic universal vaccines targeting multiple circulating and emerging coronavirus strains are warranted. Methods: This study utilized an immunoinformatic approach to identify evolutionarily conserved CD4+ (HTL) and CD8+ (CTL) T cells, and B-cell epitopes in the coronaviral spike (S) glycoprotein. Results: A total of 132 epitopes were identified, with the majority of them found to be conserved across the bat CoVs, pangolin CoVs, endemic coronaviruses, SARS-CoV-2, and Middle East respiratory syndrome coronavirus (MERS-CoV). Their peptide sequences were then aligned and assembled to identify the overlapping regions. Eventually, two major peptide assemblies were derived based on their promising immune-stimulating properties. Conclusions: In this light, they can serve as lead candidates for universal coronavirus vaccine development, particularly in the search for pan-coronavirus multi-epitope universal vaccines that can confer protection against current and novel coronaviruses. Full article
(This article belongs to the Topic Advances in Vaccines and Antimicrobial Therapy)
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