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17 pages, 3667 KB  
Article
RNA Sequencing and Metabolomic Analyses Reveal Differences in Muscle Characteristics and Metabolic Profiles Between Purebred and Crossbred Huainan Pigs
by Jing Wang, Yufu Li, Mengyang Zhang, Junfeng Chen, Qingxia Lu, Hanbing Zhang, Xiangzhou Yan, Chuanying Pan, Xuelian Zhang and Baosong Xing
Animals 2025, 15(21), 3144; https://doi.org/10.3390/ani15213144 - 29 Oct 2025
Viewed by 157
Abstract
The HN pig, indigenous to Henan Province, is distinguished by its reduced lean meat yield and slower growth rates relative to commercial foreign breeds. To address these limitations, three hybrid combinations were generated through the crossbreeding of Huainan sows with Yorkshire, Landrace, and [...] Read more.
The HN pig, indigenous to Henan Province, is distinguished by its reduced lean meat yield and slower growth rates relative to commercial foreign breeds. To address these limitations, three hybrid combinations were generated through the crossbreeding of Huainan sows with Yorkshire, Landrace, and Berkshire sires. In this study, extensive transcriptomic and metabolomic analyses of the LD muscle were carried out for the first time, and carcass and meat quality characteristics were compared between hybrid and HN pigs. Slaughter and muscle quality assessments revealed that the lean meat percentage of LH and YH was significantly lower than that of HN, with YH exhibiting the lowest intramuscular fat level, indicating that this breed possesses enhanced lean meat production efficiency. Transcriptomic profiling revealed markedly increased expression of SLIT2, CH25H, NR4A2, NR4A1, FOSB, CRABP2, GDF10, and MRAP2 in all three hybrid groups compared to HN. Gene Ontology enrichment analysis identified that the skeletal muscle cell differentiation (GO:0035914) and transforming growth factor beta receptor signaling pathway (GO:0007179) were exclusively enriched in the YH vs. HN comparison. Non-targeted metabolomic analysis identified 31, 36, and 12 DAMs in BH vs. HN, LH vs. HN, and YH vs. HN comparisons, with pyruvate metabolism being the sole pathway common to all groups. An integrated multi-omics analysis revealed significant correlations between phytosphingosine levels and DEGs across all three comparisons. In summary, these results indicate that crossbreeding substantially improves lean meat yield in HN pigs while providing novel molecular insights into the underlying genetic and metabolic mechanisms. Full article
(This article belongs to the Section Pigs)
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15 pages, 886 KB  
Article
A Deep Learning Framework for Detecting Cross-Generational Facial Markers Associated with Stress in Pigs
by Syed U. Yunas, Ajmal Shahbaz, Emma M. Baxter, Kenneth M. D. Rutherford, Mark F. Hansen, Melvyn L. Smith and Lyndon N. Smith
Agriculture 2025, 15(21), 2253; https://doi.org/10.3390/agriculture15212253 - 29 Oct 2025
Viewed by 261
Abstract
Maternal stress during gestation can alter offspring physiology, behaviour, and immune function. In pigs, such ‘prenatal stress’ is known to increase stress sensitivity, but the potential to automatically detect such sensitivity has remained unexplored. Automatic detection of facial expression has successfully identified differences [...] Read more.
Maternal stress during gestation can alter offspring physiology, behaviour, and immune function. In pigs, such ‘prenatal stress’ is known to increase stress sensitivity, but the potential to automatically detect such sensitivity has remained unexplored. Automatic detection of facial expression has successfully identified differences in pigs dependent on their stress status. This study progresses this work by demonstrating that, for the first time, using a deep learning framework applied to facial analysis, stress-linked phenotypes can be learned from one generation and detected in the next. Using a dataset of over 7000 facial images from 18 gestating sows and 53 of their daughters, we trained and evaluated five state-of-the-art deep learning architectures across six independent daughter cohorts. Attention-based models significantly outperformed CNN-based models, with the Vision Transformer (ViT) model achieving a mean accuracy of 0.78 and an average F1-score of 0.76. Grad-CAM visualisations showed that the ViT consistently attended to biologically relevant facial regions, such as the eyes and snout, whereas CNNs often focused on diffuse or non-informative areas, resulting in reduced low-stress recall and greater batch sensitivity. Models trained on maternal facial images successfully predicted stress responsiveness in daughters from unrelated lineages, indicating that the model captured generalisable facial cues of stress rather than familial resemblance. This approach supports previous work showing that machine vision can detect putatively stress-related alterations to facial expression in pigs. Future application of this approach could offer a scalable, non-invasive tool for early detection of stress in livestock production systems, opening new avenues for welfare-oriented precision livestock management and informed breeding strategies aimed at improving stress resilience. Full article
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13 pages, 1352 KB  
Article
Microvillus in LBW Meishan Piglets Preserved Microvillus Integrity Alongside Impaired Intestinal Barrier Function in Low-Birth-Weight Meishan Neonatal Piglets
by Li Dong, You Wu, Zhixuan Sun, Hongrong Wang and Lihuai Yu
Animals 2025, 15(21), 3085; https://doi.org/10.3390/ani15213085 - 24 Oct 2025
Viewed by 176
Abstract
Despite lower birth weight, Meishan piglets exhibit a notably higher pre-weaning survival rate compared to Western commercial breeds. This study aimed to evaluate the effect of low birth weight (LBW) on intestinal barrier function in Meishan neonates. Six pairs of neonatal piglets (one [...] Read more.
Despite lower birth weight, Meishan piglets exhibit a notably higher pre-weaning survival rate compared to Western commercial breeds. This study aimed to evaluate the effect of low birth weight (LBW) on intestinal barrier function in Meishan neonates. Six pairs of neonatal piglets (one normal birth weight, NBW: 0.85 ± 0.06 kg; one LBW: 0.65 ± 0.02 kg) from the same sow were euthanized at birth prior to suckling. Morphological parameters, goblet cell density, antioxidant enzyme activities, cytokine gene expression, and tight junction protein levels in the small intestine (SI) were assessed. Results showed that LBW piglets had a significantly higher SI length-to-body weight ratio (p < 0.05), along with reduced villus height, villus height-to-crypt depth ratio, and villus surface area in the jejunum and ileum (p < 0.01). Notably, microvillus structure remained intact despite the presence of mitochondrial swelling. LBW piglets also exhibited decreased goblet cell numbers, lower antioxidant capacity, dysregulated expression of cytokines (CD8, IFNγ, IL4, IL2), and reduced levels of mucin 2, ZO-1, and occludin (p < 0.05). In conclusion, although LBW Meishan piglets showed impairments in multiple aspects of intestinal barrier function, the structural integrity of the microvillus was preserved, which may contribute to their higher survival rate and represents a key adaptive advantage over commercial pig breeds. Full article
(This article belongs to the Section Pigs)
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13 pages, 3516 KB  
Article
Muscle Fibers, Free Amino Acids, and Enhanced Mitochondrial Function Explain the Unique Meat Quality of Tibetan Pigs
by Hao Li, Jie Wu, Yizhi Luo, Zekai Yao, Xinxin Li, Yebiao Ji, Baohong Li, Haiyun Xin, Bin Hu, Sutian Wang, Leiyan Cheng, Ying Wang, Ming Yang, Zhenfang Wu, Jie Yang, Enqin Zheng and Fanming Meng
Foods 2025, 14(21), 3591; https://doi.org/10.3390/foods14213591 - 22 Oct 2025
Viewed by 258
Abstract
The mechanistic underlying the favorable meat quality of Tibetan pigs has not been fully elucidated. This study integrated flavor chemistry, histomorphology, and proteomics to explore the structural and molecular features of their meat. Longissimus dorsi samples from Tibetan and Duroc pigs (n [...] Read more.
The mechanistic underlying the favorable meat quality of Tibetan pigs has not been fully elucidated. This study integrated flavor chemistry, histomorphology, and proteomics to explore the structural and molecular features of their meat. Longissimus dorsi samples from Tibetan and Duroc pigs (n = 6 each biological replicates) were quantitatively analyzed for amino acid profiling, histological assessment, and proteomic characteristic. Statistical approaches included weighted correlation network analysis, t-tests, and functional enrichment. Tibetan pork contained 34 mg/100g more total free amino acids, notably sweet-tasting Ala (+49.2%) and Thr (+32.2%). Muscle fiber density was >250% higher and diameter > 30% smaller, indicating finer texture. Proteomics revealed 149 upregulated proteins, including 57 mitochondrial differentially expressed proteins (DEPs)—11 of which belonged to electron transport chain complexes (e.g., NDUFAB1, COX2). The significant enrichment of oxidative phosphorylation pathways may be associated with mitochondrial efficient energy metabolism under hypoxic in Tibetan pigs, potentially linking to the breed’s unique meat characteristics. Ala levels showed strong correlations with metabolic and structural protein modules. The finer fibers and mitochondrial protein profile of Tibetan pigs contribute to higher amino acid content and meat quality. This structural–metabolic–flavor axis supports both hypoxia adaptation and high meat quality. Given the central role of mitochondrial electron transport chain (ETC) proteins in energy metabolism and Ala in flavor presentation, their synergistic action provides a molecular bridge between hypoxia adaptation and meat quality. Therefore, this study suggests that ETC and Ala may serve as key biomarkers for meat quality differences, offering new perspectives for meat quality research. Full article
(This article belongs to the Section Meat)
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16 pages, 3137 KB  
Article
Exploring the Relationship of Antioxidant Characteristics and Fatty Acids with Volatile Flavor Compounds (VOCs) by GC-IMS and GC-O-MS in Different Breeds of Pigs
by Xinyuan Huang, Hui Liu, Xiaoyan Tang, Yuhui Zhang and Yaxuan Li
Foods 2025, 14(20), 3580; https://doi.org/10.3390/foods14203580 - 21 Oct 2025
Viewed by 337
Abstract
The volatile organic compounds (VOCs) are the main flavor constituents of different pig breeds, which have positive effects on the quality evaluation of pork. This study aimed to clarify the effects of lipid oxidation on characteristic VOCs in different breeds of pigs. The [...] Read more.
The volatile organic compounds (VOCs) are the main flavor constituents of different pig breeds, which have positive effects on the quality evaluation of pork. This study aimed to clarify the effects of lipid oxidation on characteristic VOCs in different breeds of pigs. The fatty acid composition and antioxidant characteristics of the Ningxiang (NX) pig, Rongchang (RC) pig, Duroc × Wujin (DW) pig, and Duroc × Landrace × Yorkshire (DLY) pig were determined. The VOCs from these four pig breeds were analyzed by gas chromatography–ion migration spectrometry (GC-IMS) and solid-phase micro-extraction–gas chromatography–olfactory mass spectrometry (SPME-GC-O-MS). A total of 49 volatile compounds were identified by GC-IMS, whereas GC-O-MS detected 97 volatile components, including aldehydes, alcohols, ketones, acids, and esters. Among these, aldehydes and alcohols were the predominant categories. The results showed that RC breed pork had the highest fatty acid content, whereas NX breed pork exhibited the highest antioxidant activity. Among the VOCs from these four pig breeds, tridecanal showed a strong positive correlation with antioxidant capacity (T-AOC) and vitamin E, which was mainly reflected in NX. Furthermore, the key VOCs across the different pig breeds were mainly related to unsaturated fatty acids, such as C20:3n6, C18:1n9c, and C18:2n6c. In conclusion, the antioxidant characteristics of NX pigs are closely associated with their unique volatile flavor profile, while the characteristic flavor compounds across different pig breeds are primarily influenced by the composition and oxidation of unsaturated fatty acids. Full article
(This article belongs to the Section Food Analytical Methods)
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27 pages, 2710 KB  
Review
Hepatoprotective Effect of Silymarin Herb in Prevention of Liver Dysfunction Using Pig as Animal Model
by Prarthana Sharma, Varun Asediya, Garima Kalra, Sharmin Sultana, Nihal Purohit, Kamila Kibitlewska, Wojciech Kozera, Urszula Czarnik, Krzysztof Karpiesiuk, Marek Lecewicz, Paweł Wysocki, Adam Lepczyński, Małgorzata Ożgo, Marta Marynowska, Agnieszka Herosimczyk, Elżbieta Redlarska, Brygida Ślaska, Krzysztof Kowal, Angelika Tkaczyk-Wlizło, Paweł Grychnik, Athul P. Kurian, Kaja Ziółkowska-Twarowska, Katarzyna Chałaśkiewicz, Katarzyna Kępka-Borkowska, Ewa Poławska, Magdalena Ogłuszka, Rafał R. Starzyński, Hiroaki Taniguchi, Chandra Shekhar Pareek and Mariusz Pierzchałaadd Show full author list remove Hide full author list
Nutrients 2025, 17(20), 3278; https://doi.org/10.3390/nu17203278 - 18 Oct 2025
Viewed by 794
Abstract
Silymarin, a flavonolignan-rich extract of Silybum marianum, is widely recognized for its hepatoprotective potential. While rodent studies predominate, pigs (Sus scrofa) offer a more translationally relevant model due to their hepatic architecture, bile acid composition, and transporter expression, which closely [...] Read more.
Silymarin, a flavonolignan-rich extract of Silybum marianum, is widely recognized for its hepatoprotective potential. While rodent studies predominate, pigs (Sus scrofa) offer a more translationally relevant model due to their hepatic architecture, bile acid composition, and transporter expression, which closely resemble those of humans. This narrative review synthesises current evidence on the chemistry, pharmacokinetics, biodistribution, and hepatoprotective activity of silymarin in porcine models. Available studies demonstrate that when adequate intrahepatic exposure is achieved, particularly through optimised formulations, silymarin can attenuate oxidative stress, suppress inflammatory signalling, stabilise mitochondria, and modulate fibrogenic pathways. Protective effects have been reported across diverse porcine injury paradigms, including toxin-induced necrosis, ethanol- and diet-associated steatosis, metabolic dysfunction, ischemia–reperfusion injury, and partial hepatectomy. However, the evidence base remains limited, with few long-term studies addressing fibrosis or regeneration, and methodological heterogeneity complicates the comparison of data across studies. Current knowledge gaps in silymarin research include inconsistent chemotype characterization among plant sources, limited reporting of unbound pharmacokinetic parameters, and variability in histological scoring criteria across studies, which collectively hinder cross-study comparability and mechanistic interpretation. Advances in analytical chemistry, transporter biology, and formulation design are beginning to refine the interpretation of exposure–response relationships. Advances in analytical chemistry, transporter biology, and formulation design are beginning to refine the interpretation of exposure–response relationships. In parallel, emerging computational approaches, including machine-learning-assisted chemotype fingerprinting, automated histology scoring, and Bayesian exposure modeling, are being explored as supportive tools to enhance reproducibility and translational relevance; however, these frameworks remain exploratory and require empirical validation, particularly in modeling enterohepatic recirculation. Collectively, current porcine evidence supports silymarin as a context-dependent yet credible hepatoprotective agent, highlighting priorities for future research to better define its therapeutic potential in clinical nutrition and veterinary practice. Full article
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11 pages, 223 KB  
Article
Effects of the Litter of Origin and Rearing Litter Size on the Reproductive Potential of Replacement Gilts
by Ryszard Tuz, Martyna M. Małopolska, Tomasz Schwarz, Mirosław Wantuła and Krzysztof Tereszkiewicz
Animals 2025, 15(20), 3017; https://doi.org/10.3390/ani15203017 - 17 Oct 2025
Viewed by 291
Abstract
This study aimed to assess how prenatal and early postnatal conditions affect the future reproductive performance of young female pigs (gilts). Female piglets were selected from sows in their 3rd and 4th parity. Vaginal and cervical length (VCL) was measured using a catheter [...] Read more.
This study aimed to assess how prenatal and early postnatal conditions affect the future reproductive performance of young female pigs (gilts). Female piglets were selected from sows in their 3rd and 4th parity. Vaginal and cervical length (VCL) was measured using a catheter during the first (VCLI) and second (VCLII) oestrus. Gilts were classified based on their litter of origin: fewer than 16 piglets (OS), 16–18 piglets (OM), and more than 18 piglets (OL). The longest VCLI was found in gilts from the OM group, significantly differing from both the OS and OL groups. For VCLII, significant differences were found between OS and the other groups, with OM and OL showing greater values. Litter size at birth did not negatively affect later reproductive potential. A positive correlation was found between VCLII and the number of piglets in the first litter, indicating that the larger the litter of origin, the higher the reproductive productivity of the gilt. The results highlight that development between the first and second oestrus is critical for vaginal and cervical growth, which, in turn, reflects future reproductive performance. These findings suggest that early life conditions, particularly litter of origin, play a key role in determining the productivity of replacement gilts. Full article
(This article belongs to the Section Animal Reproduction)
27 pages, 1490 KB  
Review
Application of Gene Editing Technology in Livestock: Progress, Challenges, and Future Perspectives
by Jing Wang, Lei Zhang, Chuanying Pan, Xianyong Lan, Baosong Xing and Mingxun Li
Agriculture 2025, 15(20), 2155; https://doi.org/10.3390/agriculture15202155 - 17 Oct 2025
Viewed by 1053
Abstract
Gene editing technologies, particularly CRISPR/Cas9, have revolutionized livestock genetics. They enable precise, efficient, and inheritable genome modifications. This review summarizes recent advances in the application of gene editing in livestock. We focus on six key areas: enhancement of disease resistance, improvement of growth [...] Read more.
Gene editing technologies, particularly CRISPR/Cas9, have revolutionized livestock genetics. They enable precise, efficient, and inheritable genome modifications. This review summarizes recent advances in the application of gene editing in livestock. We focus on six key areas: enhancement of disease resistance, improvement of growth performance and meat production traits, modification of milk composition, regulation of reproductive traits, adaptation to environmental stress, and promotion of animal welfare. For example, they have played an important role in improving mastitis resistance in cows, enhancing meat production performance in pigs, increasing milk yield in goats, and producing polled cows. Despite rapid progress, practical implementation in animal breeding still faces challenges. These include off-target effects, low embryo editing efficiency, delivery limitations, and ethical as well as regulatory constraints. Future directions emphasize the development of advanced editing tools, multiplex trait integration, and harmonized public policy. With continued innovation and responsible oversight, gene editing holds great promise for sustainable animal agriculture and global food security. Full article
(This article belongs to the Section Farm Animal Production)
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21 pages, 4509 KB  
Article
Multi-Omics Analysis and Comparison of the Developmental Characteristics of Muscle Fiber Types Between Huainan and Large White Pigs in Early Postnatal Period
by Jing Wang, Mingyang Jia, Hanbing Zhang, Yaping Guo, Qi Zhang, Xiangzhou Yan, Qingxia Lu, Sihuan Zhang and Baosong Xing
Biology 2025, 14(10), 1409; https://doi.org/10.3390/biology14101409 - 14 Oct 2025
Viewed by 387
Abstract
To investigate the molecular mechanisms underlying muscle fiber development in different pig breeds and their impact on meat quality, this study collected the longissimus dorsi muscle of the indigenous Huainan pig and the commercial Large White pig at four developmental stages (0, 7, [...] Read more.
To investigate the molecular mechanisms underlying muscle fiber development in different pig breeds and their impact on meat quality, this study collected the longissimus dorsi muscle of the indigenous Huainan pig and the commercial Large White pig at four developmental stages (0, 7, 14, and 21 days postnatal). Muscle fiber types were identified using myosin ATPase staining, while transcriptomics and non-targeted metabolomics were employed to analyze differences in gene expression and metabolite composition. The results showed that the Huainan pig had a higher proportion of oxidative muscle fibers, indicating superior aerobic metabolic capacity and meat quality. Transcriptome data identified 18 differentially expressed genes common to both pig breeds, including KLF4, NOS1, SH3KBP1, and TRARG1, which were upregulated in Huainan pigs to regulate muscle fiber type composition and meat quality by influencing mitochondrial function, nitric oxide synthesis, and glucose/lipid metabolism. Metabolomics analysis revealed significantly elevated levels of carnosine, citrulline, serine, and glycerol-3-phosphate in Huainan pigs, which are associated with metabolic pathways promoting muscle fiber transformation via enhancing energy supply, antioxidant capacity, and fatty acid oxidation. Notably, integrated transcriptome–metabolome analysis showed that oxidative metabolism genes (e.g., KLF4) and metabolites (e.g., citrulline) formed an AMPK-mediated ‘gene–metabolite’ loop in Huainan pigs, which synergistically promotes mitochondrial function and fiber differentiation. In summary, this study provides new insights into the molecular mechanisms underlying meat quality differences between pig breeds and offers a theoretical basis for the breeding and development of high-quality pork. Full article
(This article belongs to the Section Genetics and Genomics)
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16 pages, 3529 KB  
Article
Functional Validation of ALDOA in Regulating Muscle Cell Fate: Based on In Vitro Proliferation, Apoptosis, and Differentiation Experiments
by Hongzhen Cao, Jing Wang, Yunzhou Wang, Jingsen Huang, Wei Chen, Hui Tang, Junfeng Chen, Baosong Xing and Yongqing Zeng
Genes 2025, 16(10), 1186; https://doi.org/10.3390/genes16101186 - 12 Oct 2025
Viewed by 336
Abstract
Background/Objectives: This study systematically investigated the expression characteristics of the ALDOA gene in skeletal muscle cells and its effects on cell proliferation, apoptosis, and differentiation. Methods: We constructed an ALDOA overexpression vector and transfected it into C2C12 cells and porcine skeletal [...] Read more.
Background/Objectives: This study systematically investigated the expression characteristics of the ALDOA gene in skeletal muscle cells and its effects on cell proliferation, apoptosis, and differentiation. Methods: We constructed an ALDOA overexpression vector and transfected it into C2C12 cells and porcine skeletal muscle satellite cells. Results: We found that ALDOA exhibited the highest expression in the longissimus dorsi muscle and was primarily localized in the cell nucleus. Overexpression of ALDOA significantly inhibited cell proliferation, induced G0/G1 phase arrest, and downregulated the expression of proliferation-related genes such as CDK2 and Cyclin D1. Concurrently, ALDOA overexpression markedly promoted apoptosis. Regarding differentiation, although ALDOA expression was upregulated during differentiation, its overexpression significantly suppressed the expression of myogenic differentiation-related genes (such as MYOD, MYOG, MEF2C), suggesting a negative regulatory role in differentiation control. Conclusions: This study reveals the multifaceted regulatory functions of ALDOA in skeletal muscle cells, providing experimental evidence for deepening the understanding of its mechanisms in muscle development and regeneration. This study provides the first functional evidence that ALDOA acts as a multifunctional regulator in skeletal muscle cells, negatively governing cell growth and fate decisions by inhibiting proliferation, promoting apoptosis, and impeding myogenic differentiation, thereby extending its role beyond glycolysis to direct governance of cellular processes. This study reveals for the first time that ALDOA possesses dual functions in muscle cells, regulating both metabolism and transcription. Full article
(This article belongs to the Special Issue Advances in Pig Genetic and Genomic Breeding)
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11 pages, 223 KB  
Article
Quality Characteristics of Baranjski Kulen (PGI) Fermented Sausage from Three Pork Production Chains
by Goran Kušec, Ivona Djurkin Kušec, Kristina Gvozdanović, Miodrag Komlenić, Marina Krvavica and Vladimir Margeta
Foods 2025, 14(20), 3473; https://doi.org/10.3390/foods14203473 - 11 Oct 2025
Viewed by 270
Abstract
The aim of this study was to investigate the physicochemical traits, colour, and texture profile of fermented sausage, Baranjski kulen, produced from the meat of pigs originating from three pork chains. The first pork chain consisted of the Black Slavonian pig breed (PC1), [...] Read more.
The aim of this study was to investigate the physicochemical traits, colour, and texture profile of fermented sausage, Baranjski kulen, produced from the meat of pigs originating from three pork chains. The first pork chain consisted of the Black Slavonian pig breed (PC1), the second pork chain consisted of crossbred pigs from the Croatian breeding programme (Duroc × Large White) (PC2), and the third pork chain (PC3) referred to commercial hybrids (Pietrain × Duroc × Pietrain × Camborough 23). A total of 16 pigs (8 gilts and 8 castrates) from each chain were used, reared to 6–18 months of age, and slaughtered at 135–180 kg. Baranjski kulen from PC2 and PC3 had a higher protein content (up to 2% more) and lower fat content (4–5% less) compared to PC1. PC3 kulen showed greater colour intensity (higher a* values), while PC2 kulen had the highest hardness, cohesiveness, gumminess, and chewiness, indicating a firmer texture. In contrast, PC3 kulen had a softer and more tender texture. These findings underline the impact of production chain on product quality and can be used to optimise processing strategies and strengthen the market potential of Baranjski kulen. Full article
(This article belongs to the Special Issue Traditional Meat Products: Process, Quality, Safety, Nutrition)
21 pages, 4285 KB  
Article
Spatiotemporal Modeling and Intelligent Recognition of Sow Estrus Behavior for Precision Livestock Farming
by Kaidong Lei, Bugao Li, Hua Yang, Hao Wang, Di Wang and Benhai Xiong
Animals 2025, 15(19), 2868; https://doi.org/10.3390/ani15192868 - 30 Sep 2025
Viewed by 357
Abstract
Accurate recognition of estrus behavior in sows is of great importance for achieving scientific breeding management, improving reproductive efficiency, and reducing labor costs in modern pig farms. However, due to the evident spatiotemporal continuity, stage-specific changes, and ambiguous category boundaries of estrus behaviors, [...] Read more.
Accurate recognition of estrus behavior in sows is of great importance for achieving scientific breeding management, improving reproductive efficiency, and reducing labor costs in modern pig farms. However, due to the evident spatiotemporal continuity, stage-specific changes, and ambiguous category boundaries of estrus behaviors, traditional methods based on static images or manual observation suffer from low efficiency and high misjudgment rates in practical applications. To address these issues, this study follows a video-based behavior recognition approach and designs three deep learning model structures: (Convolutional Neural Network combined with Long Short-Term Memory) CNN + LSTM, (Three-Dimensional Convolutional Neural Network) 3D-CNN, and (Convolutional Neural Network combined with Temporal Convolutional Network) CNN + TCN, aiming to achieve high-precision recognition and classification of four key behaviors (SOB, SOC, SOS, SOW) during the estrus process in sows. In terms of data processing, a sliding window strategy was adopted to slice the annotated video sequences, constructing image sequence samples with uniform length. The training, validation, and test sets were divided in a 6:2:2 ratio, ensuring balanced distribution of behavior categories. During model training and evaluation, a systematic comparative analysis was conducted from multiple aspects, including loss function variation (Loss), accuracy, precision, recall, F1-score, confusion matrix, and ROC-AUC curves. Experimental results show that the CNN + TCN model performed best overall, with validation accuracy exceeding 0.98, F1-score approaching 1.0, and an average AUC value of 0.9988, demonstrating excellent recognition accuracy and generalization ability. The 3D-CNN model performed well in recognizing short-term dynamic behaviors (such as SOC), achieving a validation F1-score of 0.91 and an AUC of 0.770, making it suitable for high-frequency, short-duration behavior recognition. The CNN + LSTM model exhibited good robustness in handling long-duration static behaviors (such as SOB and SOS), with a validation accuracy of 0.99 and an AUC of 0.9965. In addition, this study further developed an intelligent recognition system with front-end visualization, result feedback, and user interaction functions, enabling local deployment and real-time application of the model in farming environments, thus providing practical technical support for the digitalization and intelligentization of reproductive management in large-scale pig farms. Full article
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25 pages, 2161 KB  
Article
Long-Term Physical Activity Modulates Lipid Metabolism and Gene Expression in Muscle and Fat Tissues of Alentejano Pigs
by José Manuel Martins, André Albuquerque, David Silva, José A. Neves, Rui Charneca and Amadeu Freitas
Agriculture 2025, 15(19), 2047; https://doi.org/10.3390/agriculture15192047 - 29 Sep 2025
Viewed by 302
Abstract
This study examined the effect of long-term physical activity during the finishing period on meat and fat quality, and metabolic gene expression in obese Alentejano (AL) pigs. From 87.3 to 161.6 kg BW and for 130 days, eighteen pigs were assigned to either [...] Read more.
This study examined the effect of long-term physical activity during the finishing period on meat and fat quality, and metabolic gene expression in obese Alentejano (AL) pigs. From 87.3 to 161.6 kg BW and for 130 days, eighteen pigs were assigned to either individual pens without an exercise area (NE, n = 9) or an outdoor park with an exercise area (WE, n = 9). Both groups received identical commercial diets at 85% ad libitum intake. Loin (Longissimus lumborum—LL), tenderloin (Psoas major—PM), and dorsal subcutaneous fat samples were obtained at slaughter, and analyzed for fatty acid composition and gene expression. Physical activity modulated the fatty acid profile and key metabolic genes in muscle and fat tissues. WE pigs showed higher palmitoleic (p = 0.031) and linolenic (p = 0.022) acids in LL, while Fatty acid synthase and Leptin in LL were downregulated (p = 0.071 and p = 0.018, respectively); Fatty acid binding protein 4 was downregulated (p = 0.003) and Stearoyl-CoA desaturase upregulated (p = 0.020) in the PM of WE pigs, indicating changes in lipid metabolism. Also, Myosin heavy chain 7 was upregulated (p = 0.016) in LL, suggesting oxidative muscle remodeling. These findings suggest that moderate, long-term physical activity during finishing induces modest but favorable metabolic adaptations in muscle and fat tissues without compromising meat quality in AL pigs, supporting its use in traditional rearing systems aimed at balancing animal welfare and product quality in local breeds. Full article
(This article belongs to the Section Farm Animal Production)
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25 pages, 35400 KB  
Article
Detection and Continuous Tracking of Breeding Pigs with Ear Tag Loss: A Dual-View Synergistic Method
by Weijun Duan, Fang Wang, Honghui Li, Na Liu and Xueliang Fu
Animals 2025, 15(19), 2787; https://doi.org/10.3390/ani15192787 - 24 Sep 2025
Viewed by 353
Abstract
The lossof ear tags in breeding pigs can lead to the loss or confusion of individual identity information. Timely and accurate detection, along with continuous tracking of breeding pigs that have lost their ear tags, is crucial for improving the precision of farm [...] Read more.
The lossof ear tags in breeding pigs can lead to the loss or confusion of individual identity information. Timely and accurate detection, along with continuous tracking of breeding pigs that have lost their ear tags, is crucial for improving the precision of farm management. However, considering the real-time requirements for the detection of ear tag-lost breeding pigs, coupled with tracking challenges such as similar appearances, clustered occlusion, and rapid movements of breeding pigs, this paper proposed a dual-view synergistic method for detecting ear tag-lost breeding pigs and tracking individuals. First, a lightweight ear tag loss detector was developed by combining the Cascade-TagLossDetector with a channel pruning algorithm. Second, a synergistic architecture was designed that integrates a localized top-down view with a panoramic oblique view, where the detection results of ear tag-lost breeding pigs from the localized top-down view were mapped to the panoramic oblique view for precise localization. Finally, an enhanced tracker incorporating Motion Attention was proposed to continuously track the localized ear tag-lost breeding pigs. Experimental results indicated that, during the ear tag loss detection stage for breeding pigs, the pruned detector achieved a mean average precision of 94.03% for bounding box detection and 90.16% for instance segmentation, with a parameter count of 28.04 million and a detection speed of 37.71 fps. Compared to the unpruned model, the parameter count was reduced by 20.93 million, and the detection speed increased by 12.38 fps while maintaining detection accuracy. In the tracking stage, the success rate, normalized precision, and precision of the proposed tracker reached 86.91%, 92.68%, and 89.74%, respectively, representing improvements of 4.39, 3.22, and 4.77 percentage points, respectively, compared to the baseline model. These results validated the advantages of the proposed method in terms of detection timeliness, tracking continuity, and feasibility of deployment on edge devices, providing significant reference value for managing livestock identity in breeding farms. Full article
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17 pages, 994 KB  
Review
Genetic Strategies for Improving Pig Robustness: Reducing Antibiotic Use Through Enhanced Resilience and Disease Resistance
by László Gombos, László Búza, Ferenc Szabó and László Varga
Animals 2025, 15(18), 2753; https://doi.org/10.3390/ani15182753 - 20 Sep 2025
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Abstract
This review investigates genetic strategies aimed at improving robustness in pigs to enhance disease resistance and reduce reliance on antibiotics. Robustness refers to a pig’s ability to stay healthy and productive under stressful or challenging conditions. The review outlines current breeding practices focused [...] Read more.
This review investigates genetic strategies aimed at improving robustness in pigs to enhance disease resistance and reduce reliance on antibiotics. Robustness refers to a pig’s ability to stay healthy and productive under stressful or challenging conditions. The review outlines current breeding practices focused on key traits such as maternal ability, growth, immune function, and survival, and highlights that these robustness-related traits show measurable heritability, making them suitable for genetic improvement. Special attention is given to resistance against porcine reproductive and respiratory syndrome (PRRS), a major disease in swine. We also evaluate breed-specific differences, environmental influences, and immune response profiles, emphasizing their impact on breeding outcomes. The development of robust pig lines emerges as a sustainable strategy to reduce antibiotic dependence and enhance herd health. A distinctive contribution of this work is the integration of genetic robustness and resilience strategies with antibiotic stewardship objectives. We link genomic selection, advanced phenotyping, and targeted management interventions within a One Health framework to outline actionable, system-level pathways for reducing antimicrobial inputs. To our knowledge, this combined genetic and public health perspective has not been comprehensively addressed previously. Full article
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