Search Results (561)

Soil salinization and contamination by potentially toxic elements (PTEs), hydrocarbons, and other pollutants represent interconnected environmental challenges, particularly in arid and coastal regions. Conventional remediation technologies are associated with elevated costs and environmental constraints, limiting their applicability in fragile saline environments. In this context, halophytic plants have emerged as promising biological tools for the phytoremediation of salt-affected and contaminated soils due to their adaptations to salinity stress. This review summarizes halophyte classification, salt-tolerance mechanisms, and their role in phytoremediation processes, including phytoextraction, phytostabilization, and phytodegradation. Particular attention is given to the interactions between salinity and contaminant mobility, highlighting the species-dependent effects of saline conditions on metal bioavailability and plant uptake. Evidence from both in situ and ex situ studies is discussed, emphasizing the advantages and limitations of halophyte-assisted remediation under saline conditions. Current evidence indicates that halophytes are generally more effective for phytostabilization and long-term risk mitigation than for rapid contaminant extraction. Overall, halophyte-based phytoremediation represents a sustainable strategy for the ecological rehabilitation of saline-degraded soils under increasing pressures associated with climate change and global soil salinization. Future advances integrating plant–microbe interactions, remote sensing technologies, and biomass valorization strategies may further enhance the implementation of halophyte-assisted remediation. Full article

The growing demand for sustainable agricultural inputs has encouraged the development of biotechnological alternatives based on microbe-derived enzymes and bioactive metabolites. In this study, co-fermentation strategies involving different Trichoderma strains were investigated as a process-based approach to enhance the production of enzymes and plant growth-promoting metabolites with agricultural relevance. Distinct culture media compositions and inoculation strategies significantly affected microbial performance and biocatalytic outputs. Optimized co-culture conditions resulted in enhanced conidiation, microsclerotia formation, siderophore production (up to 95%), phosphate solubilization (up to 419 mg mL⁻¹), indole-3-acetic acid synthesis (0.60 mg mL⁻¹), and increased activities of chitinase, β-1,3-glucanase, and protease. Metabolomic profiling by GC-MS revealed the induction of diverse secondary metabolites associated with antimicrobial activity and plant–microbe signaling. Overall, the results demonstrate that Trichoderma co-fermentation is an effective biotechnological strategy to intensify enzyme and metabolite production, highlighting its potential for the development of multifunctional bioinputs for sustainable agricultural applications. Full article

Plant–microbe interactions can modulate the production of bioactive compounds involved in plant growth-promoting activity. This study investigates the metabolic reprogramming of the actinomycete model strain Streptomyces coelicolor M145 during co-cultivation with Citrus aurantium and Citrus limon seeds, used as defined plant-derived chemical inputs, under contrasting nutritional conditions with or without L-tryptophan (Trp) supplementation. Untargeted metabolome profiling revealed medium- and Citrus seed-dependent metabolic shifts in co-cultures compared with corresponding Citrus seed and S. coelicolor single cultures used as controls. Under R2YE production conditions, co-cultivation with C. limon resulted in 27 extracellular metabolites, compared with 11 detected in the TSB vegetative medium; similar trends were observed for C. aurantium. Multivariate analyses confirmed that growth medium, Citrus species, and Trp significantly shaped S. coelicolor extracellular metabolic profiles, mainly in quantitative terms. Production conditions, particularly with Trp supplementation, promoted metabolites associated with antimicrobial activity and iron acquisition, whereas vegetative conditions promoted primary metabolism and biotransformation of Citrus-derived compounds. Spent medium bioassays on Solanum lycopersicum showed that these metabolic differences were correlated with distinct biological responses. Overall, these findings demonstrate that defined plant-derived inputs modulate S. coelicolor specialized metabolism in a context-dependent manner, generating metabolomic signatures associated with differential plant growth responses compared to single cultures. Full article

Unraveling rhizosphere microbial assembly and plant–microbe co-adaptation is essential for understanding how fragile mountain ecosystems respond to environmental stress. This study investigated the rhizosphere bacterial communities of Carex enervis C. A. Mey, a dominant species in arid and semi-arid alpine meadows, along an altitudinal gradient from 1160 to 1860 m. By integrating high-throughput sequencing, iCAMP-based community assembly analysis, niche differentiation assessment, and partial least squares path modeling, we examined associations among macro-environmental gradients, rhizosphere soil conditions, bacterial community assembly, and ammonium nitrogen availability. The results revealed a dual-track assembly pattern. Macro-environmental heterogeneity, particularly in elevation and precipitation, was associated with rare microbial diversity primarily through heterogeneous selection. In contrast, abundance-weighted patterns suggested homogeneous selection of core dominant microbial groups in the rhizosphere. Within several dominant genera, closely related taxa showed divergent covariation patterns rather than uniform responses along the environmental gradient, suggesting potential fine-scale differentiation in environmental responses. Path analysis further indicated that enzyme-based rhizosphere activity proxies were associated with the relative abundance of microbial response groups and with the availability of ammonium nitrogen. These findings suggest that the rhizosphere conditions of Carex enervis are associated with bacterial assembly patterns, fine-scale taxon differentiation, and nutrient-related soil variables along the elevational gradient. This study provides new insight into plant–microbe co-adaptation in arid and semi-arid mountain ecosystems. Full article

Microplastics (MPs) and pesticides increasingly co-occur in agricultural ecosystems, where they may jointly affect plant physiology and plant–microorganism interactions. This study investigated the individual and combined effects of biodegradable poly(butylene adipate-co-terephthalate) (PBAT), the herbicide metolachlor (MET), and the beneficial fungus Trichoderma harzianum KKP 534 on wheat (Triticum aestivum). Plant growth, physiological responses, chlorophyll content, cell membrane damage, antioxidant enzyme activities and selected metabolomic and lipidomic biomarkers were evaluated. High PBAT concentrations negatively affected wheat growth by reducing root and shoot length and increasing oxidative stress, as evidenced by elevated TBARS levels, increased antioxidant enzyme activities (POD, GST, CAT, and SOD), and enhanced membrane damage. Metabolomic and lipidomic analyses further revealed stress-associated changes in amino acid metabolism and membrane lipid remodelling. PBAT also adsorbed MET and 2,4-di-tert-butylphenol (DTBP), potentially altering their bioavailability and environmental behaviour. Although T. harzianum KKP 534 promoted plant growth and enhanced antioxidant responses under control conditions, these beneficial effects were attenuated in the presence of PBAT MP. The results suggest that biodegradable microplastics may influence plant–microbe interactions and modify pesticide dynamics under controlled conditions, highlighting the need for further studies in soil-based systems. Full article

Biofumigation is increasingly recognized as an effective strategy for managing soilborne diseases. However, the understanding of the mechanisms of biofumigation has mostly focused on its direct inhibitory effects on plant pathogens, while the rhizosphere microbe-mediated effects induced by biofumigation remain unclear. Here, we investigated the effects of broccoli (Brassica oleracea var. italica) biofumigation on potato Fusarium wilt caused by Fusarium oxysporum and elucidated the changes in rhizosphere bacterial assemblage under biofumigation. Results showed that biofumigation significantly reduced disease incidence and increased tuber yield. In vitro assays revealed a strong direct inhibition of F. oxysporum by broccoli biofumigation, but the inhibition rate decreased from 99.78% on the first day to 76.27% on the seventh day. High-throughput sequencing and culture-based analyses demonstrated that biofumigation significantly shifted bacterial community assemblage in potato rhizosphere, enriching antagonistic taxa against F. oxysporum. Functional prediction suggested that biofumigation enriched bacteria associated with nitrogen consumption and methylotrophy. The changes in the rhizosphere bacterial community showed significant correlations with the incidence and severity of Fusarium wilt, indicating that biofumigation indirectly enhanced crop resistance to plant pathogens by altering the rhizosphere microbial community. These findings extend the current understanding of biofumigation beyond direct chemical toxicity and classical antibiosis and highlight its potential as an ecological strategy that harnesses the plant-associated microbiome for disease management. Full article

Beneficial and pathogenic fungal inoculation can substantially influence plant growth by reshaping rhizosphere microbial communities. However, how different fungal inoculants differentially affect microbial community assembly processes, co-occurrence network stability, keystone taxa distribution, and their potential associations with plant growth remains poorly understood. Cucumber was used as the model plant, and Fusarium oxysporum (pathogenic, Foc) and Trichoderma guizhouense (beneficial, Tri) were selected as inoculants. 16S rRNA and ITS2 amplicon sequencing were used to investigate the diversity, composition, assembly processes, and co-occurrence network structure of rhizosphere bacterial and fungal communities, respectively. In addition, we used Zi–Pi topological role analysis, functional prediction, Mantel tests and random forest to characterize keystone taxa and link microbial assembly, network stability to plant nutrient and biomass traits. Foc decreased bacterial diversity while Tri increased it. Tri was associated with greater microbial network connectivity and complexity, as well as network characteristics consistent with higher inferred stability, with more connector keystone taxa enriched in glycan and terpenoid metabolic functions; by contrast, Foc simplified network structure and enriched saprotrophic fungal keystones. Bacterial assembly shifted toward deterministic processes under Foc, whereas stochastic processes remained predominant in Tri and control treatments. Random forest further confirmed divergent drivers: bacterial assembly depended mostly on community composition, while fungal assembly was regulated by plant nutrients and fungal diversity. All microbial properties were tightly linked to plant biomass and nutrient accumulation. Collectively, beneficial and pathogenic fungi exert opposing influences on rhizosphere microbial organization: Tri was associated with more connected microbial communities and a greater diversity of predicted functional traits, whereas Foc strengthened environmental filtering and simplified community structure, with plant–microbe–nutrient feedbacks likely contributing to rhizosphere assembly and ecosystem functionality. Full article

(1) Background: Soil nutrient availability in vineyards is shaped by physicochemical and biological processes. However, how baseline edaphic differences are related to soil microbial functional genes and plant elemental composition under biodynamic management remains unclear; (2) Methods: Two biodynamically managed Pinot Noir (Vitis vinifera L.) vineyard sites in Tasmania, hereafter referred to as site 1 (S1) and site 2 (S2), were compared at fruit set, veraison, and ripening. Soil physicochemical properties were measured, soil, leaf, and grape berry elemental compositions were assessed by X-ray fluorescence, and soil microbial taxonomic marker genes and soil microbial functional genes were quantified by qPCR. Because the dataset comprised only six site-by-stage composite samples without independent field-level biological replication, multivariate analyses and partial least squares path modeling were used as exploratory tools; (3) Results: The two sites showed distinct baseline soil physicochemical properties. Soil microbial functional genes varied across sites and phenological stages, with several nitrogen (N)-cycling genes showing higher values at S1 and amoA increasing toward ripening at both sites. AMG, defined here as an arbuscular mycorrhizal fungal (AMF)-related marker, also increased toward ripening and was interpreted separately from the N-cycling genes. Soil elements mainly reflected site-related differences, whereas leaf and berry elements showed clearer variation across phenological stages. The exploratory path model, based on this limited composite dataset, summarized sequential associations among soil physicochemical properties, microbial functional genes, leaf elements, and berry elements, as well as a direct association between soil physicochemical properties and berry elemental composition; (4) Conclusions: These findings describe exploratory soil–microbe–plant association patterns under biodynamic management and should not be interpreted as statistically inferential or causal evidence. Full article

Aquatic ecosystems are under severe stress from a diverse combination of contaminants, including heavy metals, pesticides, pharmaceuticals, and microplastics, driven by rapid industrialization, intensive agriculture, and urbanization. Globally, 80% of wastewater remains untreated, and conventional systems often fail to address emerging contaminants. Consequently, toxic heavy metals like lead and mercury can persist in water sources for decades. In response, phytoremediation has emerged as a scalable, eco-friendly, nature-based alternative. Among phytoremediation agents, duckweeds are increasingly recognized for their rapid growth, simple morphology, and continuous water-column contact. This review outlines the landscape of duckweed-based remediation, detailing molecular detoxification pathways and the synergistic role of associated microbiomes in enhancing environmental cleanup. Evidence indicates that contaminant removal is often supported by plant-microbe interactions. Despite extensive laboratory validation, field-scale implementation remains constrained by environmental complexity, pollutant mixtures, and variable climatic conditions. Furthermore, while duckweed systems hold promise within circular bioeconomy frameworks, converting wastewater into nutrient-rich biomass, contaminant accumulation in plant tissues raises concerns about biomass utilization and contaminant carryover. Addressing these challenges requires an integrative approach that links molecular detoxification, ecological interactions, and engineered system design to realize the full potential of duckweeds for sustainable aquatic pollution management. Full article

Alfalfa (Medicago sativa L.) is widely recognized as a major forage crop, yet its role as a multifunctional biological input in sustainable horticultural production remains underexplored. This review evaluates alfalfa as a biological nitrogen source, organic fertilization resource, and biofertilizer-supporting crop within vegetable, medicinal, and perennial horticultural systems. Due to its high capacity for biological nitrogen fixation, alfalfa can supply substantial amounts of plant-available nitrogen, reducing dependency on synthetic fertilizers and supporting environmentally sound nutrient management. When used as green manure, cover crop, intercrop, mulch source, compost feedstock, or processed organic fertilizer, alfalfa enhances the soil organic carbon (SOC), improves soil structure, and increases the water-holding capacity properties particularly critical in intensive horticultural production. Higher SOC levels also contribute to the improved tolerance of horticultural crops to drought and heat stress through enhanced soil moisture retention and rhizosphere buffering. Alfalfa-based organic inputs stimulate rhizosphere microbial biomass, enzymatic activity, and functional genes associated with nitrogen cycling, strengthening plant–microbe interactions that underpin biofertilizer effectiveness. Evidence from vegetable and perennial systems indicates that alfalfa-derived amendments and rotations increase soil nitrogen availability, support yield stability, and improve soil health over the long-term. In orchards and vineyards, alfalfa cover cropping contributes to carbon sequestration, erosion control, and enhanced soil biological functioning. Overall, alfalfa emerges as a strategic species for integrating organic fertilization and biofertilizer-based approaches into modern horticultural systems, supporting reduced mineral fertilizer inputs while sustaining productivity, soil health, and environmental quality. Full article

Soil salinization severely constrains plant growth, yet the roles of ion composition and rhizosphere microbial communities in shaping plant performance remain poorly resolved. Here, we investigated multiple crop and wild plant species in saline–alkali soils and compared rhizosphere ion composition, microbial communities, and plant growth status. Restricted plant growth was consistently associated with elevated Na⁺ and Cl⁻ concentrations, while fungal diversity was significantly higher in well-growing plants. Ion composition (particularly Na⁺, Cl⁻, SO₄^2–, and Mg²⁺) was strongly correlated with microbial community structure, and a set of microbial taxa, including bacterial phyla such as Deinococcota and Gemmatimonadota and fungal phyla within Ascomycota and Basidiomycota, were repeatedly associated with plant growth status across species. Notably, plant species exhibited distinct apparent, threshold-like responses, and in several cases, plant growth differences were not fully explained by salinity levels alone, suggesting that rhizosphere microbial communities may buffer salt stress. Together, our results reveal that ion composition governs plant growth not only through direct ionic stress but also via microbially mediated pathways, highlighting an ion–microbe–plant interaction framework underlying growth variation in saline–alkali soils. Full article

This study investigated the potential of microbial-assisted phytoremediation using Eichhornia crassipes (water hyacinth) to reduce heavy metal and salinity pollution in produced water collected from Aadi Oil Field in Gujar Khan, Pakistan. Produced water was analyzed for physicochemical parameters and heavy metal content using Inductively Coupled Plasma–Optical Emission Spectrometry (ICP-OES) to establish baseline data. E. crassipes plants augmented with indigenous, contaminant-tolerant microbial isolates were employed in a 15-day laboratory experiment. The results showed a resilient growth response, with plant height increasing to approximately 11–15 cm and root length extending up to 10–13 cm across treatments. Biomass also improved, with wet weights reaching 21–24 g from an initial 20 g. The treatment effectively reduced key physicochemical parameters: pH was stabilized from an initial alkaline value of 9.14 to near-neutral values (7.0–7.5), and total dissolved solids (TDSs) were reduced by approximately 50%. Heavy metal removal rates varied, with the highest efficiency of 79.2% for Silver (Ag) and the lowest (18.5%) for Mercury (Hg) This study demonstrates that E. crassipes actively participated in phytoremediation by absorbing and accumulating heavy metals and reducing salinity. The association with contaminant-tolerant microbes appeared to enhance the plant’s tolerance and overall treatment efficacy, indicating that plant–microbe interactions offer a sustainable strategy for the treatment of produced water. Full article

Diet plays a critical role in shaping the composition of gut microbiota in insects. Samia ricini, an economically important Lepidoptera insect, is a polyphagous herbivore that offers a useful model for studying dietary effects on the animal gut microbiome. Here, we fed S. ricini larvae with different food plants, Ricinus communis, Ailanthus altissima, and Manihot esculenta leaves to investigate how host plant species influence growth performance, digestive enzyme activities, and the gut microbial community. Our results showed that the Ricinus group exhibited better growth performance. Regarding digestive enzymes, the midgut lipase activity was significantly higher in the Ricinus group than in the Ailanthus group, while no significant differences were observed in α-amylase, cellulase, or trypsin activities among the three groups. Compared to the Manihot group, the Ricinus group showed increased bacterial richness, while the Ailanthus group showed increased bacterial diversity. β-diversity analysis further revealed distinct microbial community structures among all three dietary groups. Specifically, Acinetobacter, Mammaliicoccus, Roseateles, Methylobacterium, Agrobacterium, Faecalibacterium, and Segatella were the dominant bacterial genera. Functional prediction revealed that gut microbes enriched in the Ricinus group were associated with terpenoid/polyketide metabolism, xenobiotics biodegradation, and glycan biosynthesis, whereas those involved in carbohydrate metabolism and biosynthesis of other secondary metabolites were higher in the Manihot group. Spearman correlation analysis indicated that Methylobacterium, Methylorubrum, and Agrobacterium were significantly positively correlated with larval weight, while Staphylococcus and Cyanothece_PCC-7424 exhibited negative correlations. Collectively, these findings suggest a potential association between different plant-derived diets, gut microbiota composition, and host growth performance, highlighting the pivotal role of diet in shaping insect gut microbial communities. Full article

Chitosan-based silver nanoparticles (Ch-AgNPs) are emerging as promising antimicrobial materials with potential applications in crop protection. This study evaluated the formulation-dependent antimicrobial activity and plant compatibility of Ch-AgNPs synthesized from chitosan extracted via different routes from shrimp shells. Antibacterial activity was assessed against representative Gram-negative and Gram-positive model bacteria (Escherichia coli and Staphylococcus aureus), as well as phytopathogenic bacteria (Xanthomonas campestris, Pseudomonas syringae), using disk diffusion assays. Antifungal activity was evaluated against Fusarium graminearum in vitro and in a controlled growth chamber. All formulations exhibited concentration-dependent antibacterial activity, with L10 and L20 formulations derived from optimized lactic acid-based extraction routes and DP4 derived from an inorganic deproteinization-based extraction route showing the highest efficacy at 1.0 mg/mL. Strong antifungal activity was observed, particularly for L10 and DP4, achieving mycelial growth inhibition of 92% and 84%, respectively, at 1.0 mg/mL. Seed germination and seedling growth assays confirmed that all formulations were non-phytotoxic at 1.0 mg/mL, with L10 and DP4 significantly enhancing germination parameters and early plant growth. Under controlled conditions, these formulations also reduced the incidence and severity of crown and root rot in spring wheat caused by F. graminearum. These findings demonstrate that optimized Ch-AgNP formulations combine antimicrobial activity with plant compatibility, highlighting their potential for crop protection, pending further environmental safety and agronomic validation under field conditions. Full article

Litter decomposition regulates the quantity and quality of plant-derived carbon (C) and nitrogen (N) inputs to soil and is closely associated with microbial community structure. However, how elevated ozone (O₃) and nitrogen (N) addition interactively affect residual litter inputs and their associations with soil microbial communities remains poorly understood, especially in agroforestry systems. Here, we conducted a 12-month in situ litter decomposition experiment using two poplar clones (107 and 546) under ambient or elevated O₃ with or without N addition (60 kg N ha⁻¹ yr⁻¹) at an O₃-FACE platform in northern China. Litter mass and chemical traits were measured during decomposition, and endpoint soil microbial community structure was characterized using phospholipid fatty acid (PLFA) profiling. Treatment effects and litter–microbe associations were evaluated using linear mixed-effects models, correlation analysis, and redundancy analysis (RDA). Endpoint litter mass remaining was significantly affected by O₃, clone identity, and their interactions with N addition, while endpoint litter chemical traits showed trait-specific responses. PLFA-derived microbial community indices also showed treatment- and clone-dependent responses, particularly in bacterial groups, AM fungi, and the fungal-to-bacterial ratio. Endpoint litter mass remaining showed the strongest statistical association with PLFA-derived microbial community structure, whereas individual nutrient concentrations showed weaker independent effects. These findings suggest that O₃- and N-induced changes in residual litter quantity and quality are associated with shifts in PLFA-derived microbial community structure. Because PLFA characterizes microbial community structure rather than process rates, these findings should be interpreted as evidence of structural microbial reorganization associated with altered residual litter inputs, rather than direct evidence of changes in C or N cycling rates. Full article