Search Results (2,299)

Phenolic levels in Larix gmelinii are closely correlated with its interaction with Neofusicoccum laricinum. As a vital subclass of phenolics, phenolic acids participate in both constitutive and inducible plant defense responses. In the present study, metabolomic, transcriptomic, physiological and biochemical analyses were conducted to investigate the tissue heterogeneity of phenolic acid metabolism in larch stem tissues, as well as the dose-dependent effects and underlying mechanism of vanillic acid (VA) on N. laricinum, providing valuable insights into the interaction between L. gmelinii and N. laricinum. A total of 119 differentially accumulated phenolic acid metabolites were identified in this study. Shoots exhibited markedly higher levels of most phenolic acids, including VA, than trunks and branches, accompanied by significant enrichment of the phenylpropanoid biosynthesis pathway. Notably, VA exhibited a biphasic dose–response on N. laricinum, facilitating the growth of N. laricinum at low concentrations (2–1117.12 μg/mL) and exerting inhibitory effects at high concentrations (>1117.12 μg/mL). Transcriptomic analysis further suggested that phenolic acid metabolism and the overcompensation effect collectively accounted for this unique dose–response pattern. Collectively, this study verified that phenolic acid metabolism across L. gmelinii stem tissues presented distinct tissue heterogeneity, and VA exerted a biphasic dose–response on N. laricinum. Full article

The valorization of post-distillation by-products represents a key strategy within circular economy frameworks, particularly for medicinal and aromatic plants of the Lamiaceae family. This study investigates, for the first time, the chemical composition and biological potential of the liquid residue obtained after hydrodistillation of Clinopodium albanicum (Griseb. ex K.Malý) Melnikov, an endemic Balkan species. Untargeted LC–HRMS/MS analysis revealed a complex metabolomic profile dominated by hydroxycinnamic acid derivatives, including caffeoylquinic acids, alongside a diverse flavonoid fraction comprising quercetin, kaempferol, apigenin, and acacetin derivatives. The presence of sugars and organic acids further indicated a broad metabolic composition. The evaporated liquid residual extract exhibited strong antioxidant activity (DPPH: 32.54, ABTS: 27.80, FRAP: 35.95 mmol GAE/100 mg). Pronounced antibacterial activity was observed against both Gram-positive and Gram-negative bacteria, including Staphylococcus aureus, MRSA, Listeria monocytogenes, Escherichia coli, and Pseudomonas aeruginosa (MICs 0.5–1 mg/mL). Additionally, the extract demonstrated antifungal activity against Candida auris and Candida parapsilosis, as well as strong antibiofilm effects against P. aeruginosa (up to 95.52% inhibition). Molecular docking supported these findings, revealing strong binding affinities of key phenolics toward the bacterial targets FabI and D-Ala-D-Ala ligase. Overall, the results highlight the potential of this by-product for nutraceutical and pharmaceutical applications. Full article

The deployment of insect-resistant rice cultivars is a sustainable strategy for pest control, while the adaptation of pest insects to resistance limits the efficiency of resistant rice varieties. The cytochrome P450 gene CYP4C61 was previously identified as a key locus underlying brown planthopper (BPH, Nilaparvata lugens) adaptation to the resistant rice variety IR36, but its metabolic function remained unknown. Here, we integrated RNAi-mediated gene silencing, untargeted metabolomics, and transcriptomics to elucidate the metabolic role of CYP4C61 in the BPH population virulent to resistant rice IR36. CYP4C61 silencing significantly impaired BPH fitness, including reduced body weight, increased mortality, disrupted feeding behavior, and a progressive body darkening of BPH reared on IR36 rice, reflecting dopamine accumulation entering the melanization branch. Metabolomic analysis identified 240 differentially abundant metabolites in silenced BPH on IR36, revealing a pattern of precursor reduction and product accumulation in the dopamine pathway. Transcriptomic analysis also revealed that CYP4C61 knockdown altered gene expression in the dopamine pathway in a host-dependent manner. Enzyme-linked immunosorbent assay validated dopamine accumulation after CYP4C61 knockdown exclusively in the IR36 background. Our integrated multi-omics evidence indicates that CYP4C61 contributes to dopamine homeostasis in the virulent BPH, providing a mechanistic link between a P450 gene and dopamine-mediated insect adaptation to resistant host plants. Full article

Food allergy (FA) is an increasing public health concern, highlighting the urgent need for safe, bioactive-based preventive strategies. This study evaluated genistein, a plant-derived isoflavone, in an ovalbumin (OVA)-induced murine FA model. Genistein was administered before sensitization and throughout allergy induction. Clinical symptoms, rectal temperature, diarrhea, OVA-specific antibodies, mast cell responses, intestinal barrier markers, gut microbiota, short-chain fatty acids (SCFAs), and fecal metabolites were assessed using immunological, histological, microbiome, and metabolomic analyses. Genistein pretreatment prevented OVA-induced clinical symptom scores, rectal temperature decline, diarrhea occurrence, OVA-specific antibody responses, and mast cell responses. These changes were accompanied by preservation of jejunal tight junction-related markers and modulation of T-cell-associated immune responses. In vitro, genistein modulated antigen uptake, maturation-associated features of bone marrow-derived dendritic cells (BMDCs), and BMDC-driven CD4⁺ T-cell polarization. In parallel, genistein-pretreated mice showed altered gut microbial structure, higher relative abundances of selected SCFA-associated taxa, increased fecal butyrate, and fecal metabolomic alterations involving purine metabolism, bile-acid-related metabolism, and tryptophan-related microbial metabolites. Consistently, correlation analyses indicated associations among microbial taxa, metabolites, immune indicators, and intestinal barrier markers. Together, these findings provide preliminary mechanistic insight into genistein in experimental FA and support further investigation of genistein as a dietary bioactive candidate for FA prevention. Full article

Objectives: Plant extracellular vesicles (EVs) mediate intercellular communication and carry tissue-specific metabolites, yet tissue-resolved EV metabolomics in non-model medicinal plants remains poorly explored. Hibiscus syriacus is a valuable medicinal and ornamental species rich in bioactive compounds, but the metabolic profiles of flower- and leaf-derived EVs are unknown. This study aimed to characterize tissue-specific EV metabolomes of H. syriacus and reveal their functional implications. Methods: EVs were isolated from flowers (MJH) and leaves (MJY) of H. syriacus and verified by TEM and DLS. Untargeted LC-MS/MS metabolomics was applied to profile EV metabolites. Multivariate statistics (PCA, OPLS-DA), differential metabolite screening (VIP > 1, p < 0.05), and KEGG pathway enrichment were performed. Results: MJH- and MJY-EVs exhibited typical EV morphology and high purity. In total, 3338 metabolites were identified, dominated by lipids (29.43%). Clear metabolic separation was observed between MJH- and MJY-EVs. Thirty-nine differential metabolites were identified: 31 upregulated in MJH-EVs (lipids, pentadecanoic acid) and eight in MJY-EVs (nucleotides, secondary metabolites). Glycerophospholipid metabolism was the most enriched pathway in MJH-EVs, while MJY-EVs were linked to energy and defensive metabolism. Conclusions: H. syriacus EVs display strong tissue-specific metabolic signatures. Leaf EVs prioritize lipid metabolism for photosynthetic function and stress tolerance, while flower EVs accumulate secondary and energy-related metabolites for reproduction and defense. These findings advance plant EV biology and support potential applications of H. syriacus EVs in cosmetics and agriculture. Full article

Background: Root rot caused by Fusarium solani is a devastating disease in Angelica sinensis (danggui), leading to severe yield and quality losses. Sustainable control strategies are urgently needed. According to the plant “cry for help” theory, plants under pathogen attack may recruit beneficial microbes via root exudates. However, whether A. sinensis employs this strategy against F. solani remains unknown. This study aimed to identify potential “cry for help” metabolites and evaluate their biocontrol potential. Methods: LC-MS analysis revealed that F. solani infection significantly altered the metabolic profiles of both A. sinensis roots and rhizosphere soil. Results: Comparative analysis identified seven metabolites specifically upregulated in infected plants but not detected in the pathogen, including taurine, oxoadipic acid, quinolinic acid, 6-phosphogluconic acid, methyl cinnamate, 2-phenylethanol, and (R)-3-hydroxybutyric acid. Exogenous application of these seven metabolites revealed that taurine and methyl cinnamate significantly alleviated disease symptoms, improved plant growth (root length, biomass), and enhanced the activities of key defense enzymes (peroxidase, POD, phenylalanine ammonia-lyase, PAL, lipoxygenase, LOX, polyphenol oxidase, PPO). Furthermore, taurine and methyl cinnamate reshaped the rhizosphere microbiome. The incidence of root rot was reduced by 51.3% and 50.8%, respectively. Taurine enriched actinobacteria (e.g., Paeniglutamicibacter) and reduced the relative abundance of pathogenic Ascomycota fungi, while methyl cinnamate markedly enriched the nitrogen-fixing bacterium Azotobacter and the saprophytic fungus Schizothecium. Crucially, both treatments significantly suppressed the proliferation of F. solani in the rhizosphere. Conclusions: Our findings demonstrate for the first time that A. sinensis activates a “cry for help” response upon attack by F. solani, with taurine and methyl cinnamate preliminarily identified as key signaling metabolites that can directly or indirectly inhibit the development of A. sinensis root rot. These compounds enhance plant resistance and recruit beneficial microorganisms, offering a novel and promising ecological strategy for the green control of A. sinensis root rot. Full article

Temporary immersion systems (TISs) are an advanced biotechnological platform for the large-scale cultivation of medicinal plants and the consistent production of high-value secondary metabolites. In this study, we evaluated three immersion regimes with stand-by periods of 4, 8, or 12 h, each paired with a 15-minute immersion period, to optimise shoot growth and colchicine accumulation in Colchicum autumnale L. and Colchicum bivonae Guss. The 4 h stand-by/15 min immersion regime yielded the highest growth index (C. autumnale: 0.75 ± 0.08; C. bivonae: 1.25 ± 0.03) and maximum colchicine content (C. autumnale: 0.19 ± 0.01 mg/g dry biomass; C. bivonae: 0.25 ± 0.02 mg/g dry biomass). Using gas chromatography-mass spectrometry (GC-MS), detailed metabolic profiling of cultures grown under this optimised regime was performed, resulting in the identification of 46 metabolites, including amino acids, organic acids, sugars, sugar alcohols, phenolic, and fatty acids. Volcano plot analysis revealed 11 upregulated and 5 downregulated metabolites in C. autumnale relative to C. bivonae. Significance analysis of metabolomics (SAM) identified 34 metabolites with statistically significant differences between two species. Hierarchical clustering and partial least squares discriminant analysis (PLS-DA) confirmed clear species separation, with Component 1 explaining 68.8% of the total metabolic variance. Glucose-6-phosphate (VIP = 2.01), citric acid (VIP = 1.85), asparagine (VIP = 1.67), and γ-aminobutyric acid (GABA; VIP = 1.52) were the primary biomarkers differentiating the species. These findings confirm that TISs provide an optimised environment for biomass accumulation and stable alkaloid biosynthesis in the Colchicum genus, with C. bivonae emerging as a promising candidate for biotechnological exploitation. Full article

Soil salinization is a challenge for global agriculture and can affect the yield of staple crops such as maize. Plant growth-promoting rhizobacteria (PGPR) are known to play a pivotal role in enhancing plant growth and stress resilience. However, no studies so far have reported plant growth-promoting (PGP) activity in members of the genus Marinobacter. In this study, a novel strain of Marinobacter sp. ZP-590, was identified as a PGPR based on a polyphasic taxonomic analysis, which was isolated from the rhizosphere soil of Tamarix chinensis Lour. Genomic analysis revealed that ZP-590 possesses 5370 protein-coding genes, including core metabolic, catalytic, and transport functions essential for bacterial survival and plant interactions, along with multiple genes potentially associated with PGP traits such as phosphate solubilization, nitrogen fixation, and the production of siderophore and exopolysaccharide (EPS), tryptophan (a prerequisite for IAA synthesis), and amylase. These genomic predictions were functionally validated through in vitro assays confirming all predicted PGP activities. Pot experiment results suggested that inoculation with ZP-590 enhanced maize growth under saline conditions. Compared to the non-inoculated controls, the treatment significantly increased root fresh weight (14.25%; p < 0.05) and stem fresh weight (125.04%; p < 0.01), while shoot height and leaf fresh weight showed no significant changes. Metabolomic profiling revealed that ZP-590 inoculation was associated with systemic metabolic changes in maize under saline conditions. A total of 394, 262, and 601 differentially accumulated metabolites in the root, stem, and leaf, respectively. These changes were characterized by a substantial up-regulation of antioxidant compounds, notably flavonoids, and changes in carbohydrate and lipid metabolism pathways. The changes in carbohydrate and lipid metabolism pathways may contribute to the supply of energy and structural components for stress adaptation. Meanwhile, the accumulation of antioxidant compounds significantly mitigated saline-induced oxidative damage by reducing the levels of superoxide anion (O₂⁻) in leaves. In this study, Marinobacter sp. ZP-590 is characterized as a PGPR that promotes maize growth under saline conditions. These findings provide a foundation for investigating the molecular mechanisms underlying the interaction between ZP-590 and maize under saline conditions. Full article

Mirabilis himalaica is an endemic Tibetan medicinal plant distributed from the Western Himalaya to the Hengduan Mountains, highly regarded for its abundant flavonoids. Traditional knowledge holds that its medicinal properties vary considerably with geographic origin, yet the genetic and metabolic basis of this differentiation remains poorly understood. Here, we integrated plastome resequencing of 134 individuals from 23 populations with metabolomic and transcriptomic analyses of three representative sites to investigate population genetic variation and flavonoid metabolic differentiation. Pan-plastome revealed a typical quadripartite structure (154,232–154,422 bp) containing 113 unique genes across M. himalaica. A total of 620 SNVs, 171 indels, and four small inversions were identified from the pan-plastome, and further analyses based on these variants supported the delineation of four genetic lineages across all individuals. Overall genetic diversity was high (H_T = 0.985, H_S = 0.580), with majority variation occurring among groups (71.038%). Both IBD and IBE analyses found a significantly positive correlation between genetic distance and geographic and environmental distance (IBD: r = 0.348, p = 0.001; IBE: r = 0.219, p = 0.016). Flavonoids represented the most abundant metabolites (19.5%) and showed significantly higher accumulation in high-altitude populations, where key biosynthetic genes (e.g., CHS) were upregulated. Notably, these altitude-associated metabolic patterns were observed independently of the plastome-based genetic lineages. Together, we propose defining four evolutionary lineages as conservation units and prioritizing populations with unique haplotypes. This study provides critical genomic resources for provenance tracing, quality evaluation, and conservation management of this endangered Tibetan medicinal plant, and offers preliminary insights into the parallel patterns of pan-plastome variation and altitude-related metabolic differentiation, though without evidencing a direct causal link between them. Full article

Arbuscular mycorrhizal fungi (AMF) can improve plant performance, but how they coordinately influence root metabolism and associated bacterial communities in sweet potato remains unclear. Here, a pot experiment was conducted to investigate the effects of Glomus intraradices inoculation on sweet potato seedlings by integrating analyses of rhizosphere soil properties, plant growth and nutrient uptake, root metabolomics, and rhizosphere and endophytic bacterial communities using 16S rRNA gene sequencing with FAPROTAX-based functional prediction. AMF inoculation significantly increased whole-plant fresh and dry biomass, potassium concentration and accumulation, and the accumulation of starch and water-soluble carbohydrates, while no significant effects were observed on dry matter rate or plant nitrogen and phosphorus concentration. In the rhizosphere, AMF reduced soil electrical conductivity and increased organic matter content without significantly affecting pH, alkali-hydrolyzable nitrogen, available phosphorus, or available potassium. Root metabolomic profiling identified 289 differential metabolites, with enrichment of phenylpropanoid biosynthesis, glycerophospholipid metabolism, porphyrin metabolism, and nucleotide metabolism, together with broad up-regulation of lipid-related metabolites. Bacterial communities showed strong compartment specificity, with the root endosphere displaying lower alpha diversity than the rhizosphere. Higher rhizosphere bacterial Shannon diversity was observed in the AMF treatment, together with compartment-dependent shifts in bacterial community composition; enrichment of endophytic taxa such as Devosia and Niastella was detected following AMF inoculation. Functional prediction further suggested niche differentiation between rhizosphere and endophytic bacteria, together with AMF-associated shifts in carbon- and nitrogen-related functions. Overall, these results suggest that G. intraradices inoculation is associated with enhanced sweet potato growth and enhanced potassium and carbohydrate accumulation in association with coordinated changes in rhizosphere conditions, root metabolism, and bacterial community assembly. Full article

Background/Objective: Anoectochilus roxburghii, a high-value medicinal orchid, faces significant challenges in quality standardization during large-scale tissue culture due to a lack of understanding of the underlying molecular mechanisms. This study aimed to compare “Jianlan No.2” plantlets cultured under a conventional tissue culture system (CK) and a sugar-free tissue culture system (TD), to elucidate the phenotypic and molecular basis for quality improvement. Methods: A systematic comparison was conducted. Phenotypic traits of plantlets from both systems were measured. Integrated transcriptomic (RNA sequencing) and untargeted metabolomic analyses were employed to identify the molecular differences at the gene expression and metabolite accumulation levels. Results: TD-grown seedlings exhibited significantly superior growth characteristics, including greater plant height, higher rooting rate, and improved transplant survival. Transcriptomic analysis identified 416 differentially expressed genes (DEGs) (44 upregulated, 372 downregulated in TD), which were significantly enriched in pathways related to cell wall organization, apoplast, and photosynthesis. Sixteen key genes were pinpointed as closely associated with seedling growth and metabolic regulation. Metabolomic profiling revealed 502 differentially accumulated metabolites (DAMs), with significant perturbations primarily in phenylpropanoid biosynthesis and terpenoid metabolism. Conclusions: The sugar-free tissue culture system enhances A. roxburghii seedling quality by coordinately modulating photosynthetic capacity, carbon metabolism, and the biosynthesis of key secondary metabolites. These findings provide a crucial molecular foundation for optimizing tissue culture protocols and advancing the standardized, high-quality cultivation of this valuable medicinal plant. Full article

Background: Secondary metabolites not only constitute the material basis for plant responses to multiple environmental stresses but are also extensively utilized in the pharmaceutical industry. Methods: In the present work, we investigated the metabolic response of Artemisia argyi to UV-A irradiation through transcriptomic and metabolomic analyses. Results: After 16 h of UV-A treatment with an intensity of 2.5 μmol m⁻² s⁻¹ and 8 h of dark cultivation, a total of 4343 differentially expressed genes were identified, most of which were associated with fatty acid metabolism, biosynthesis of secondary metabolites, and ribosome. Of the 1959 metabolites detected in samples exposed to a 16/8 h UV-A/dark cycle for 6 days, a total of 223 differentially accumulated metabolites were identified and classified into 12 subgroups, with phenolic acids and flavonoids representing the largest subgroups. Comprehensive analyses indicated that polyphenols and terpenes play critical roles in the adaptation of A. argyi to UV-A irradiation. The phytohormone methyl jasmonate was identified as a key regulator of the enhanced synthesis of these secondary metabolites, through activation of transcription factors from the MYB and bHLH families. Conclusions: This study deepens our understanding of secondary metabolic regulation in response to UV-A stress and provides a simple and reliable method to promote the accumulation of specific secondary metabolites in Artemisia species. Full article

Background: Diet is a key modifiable factor influencing oral health and may shape the oral microbiota. While individual nutrients, especially free sugars, have been widely studied, the role of overall dietary patterns remains unclear. This systematic review aimed to evaluate the association between dietary patterns and oral microbiota in humans. Methods: PubMed/MEDLINE, Embase, and Web of Science were searched up to 18 March 2026. Studies assessing defined dietary patterns (Mediterranean, vegan, vegetarian, omnivorous) and oral microbiota using sequencing-based methods in healthy individuals were included. Due to heterogeneity in study design, dietary assessment, and microbiome analysis, a narrative synthesis was conducted. Results: Six studies (n = 448 participants) were included. Dietary patterns showed limited impact on overall microbiota structure, with no consistent changes in alpha and beta diversity. However, differences were observed at the taxonomic level. The Mediterranean diet was generally associated with a lower abundance of periodontopathogenic taxa. Plant-based and omnivorous diets showed distinct microbial profiles, particularly involving Neisseria, Haemophilus, Prevotella, and Streptococcus. Functional activity and metabolomic profiles appeared more sensitive to dietary variation than taxonomic composition alone. Conclusions: The oral microbiota appears relatively stable across dietary patterns, although diet may influence specific taxa and functional pathways relevant to oral health. The Mediterranean diet shows the most consistent association with beneficial microbial shifts. However, evidence is limited by heterogeneity and cross-sectional designs, highlighting the need for longitudinal and interventional studies. Full article

Accumulation of ionic liquids (ILs) in soil may alter its physicochemical and biological properties. However, the current understanding of their effects on the rhizosphere microenvironment of crop plants remains limited. We examined the effects of two ILs—[Opy]Br and [Omim]Br—which differ in cation structure but share the bromide anion, on maize rhizosphere microbial communities and metabolites at a concentration of 0.6 g/kg soil. Exposure to [Opy]Br and [Omim]Br significantly impaired maize seedling development, with [Opy]Br inducing more severe growth suppression. These phytotoxic effects were also reflected in changes in rhizosphere soil properties. In bacterial communities, [Omim]Br more strongly inhibited membrane transport (e.g., ATP-binding cassette transporters), lipid synthesis, and carbon metabolism, thereby impairing bacterial nutrient uptake and energy metabolism. In fungal communities, saprophytic fungi were activated under both treatments, accelerating organic matter decomposition, whereas pathogens were suppressed, particularly under [Omim]Br treatment. Metabolomic analysis revealed widespread accumulation of amino acids in maize roots following exposure to both ILs, accompanied by significant depletion of the antioxidant glutathione. Carbohydrate metabolism was broadly suppressed, with [Omim]Br exerting a more pronounced inhibitory effect. Hormone levels were generally reduced, with [Opy]Br causing more severe depletion. Overall, both ILs induced oxidative stress, hormonal disruption, and metabolic imbalance in maize. This study provides a reference for evaluating the risks and regulatory potential of ILs in agricultural environments. Full article

This study investigated the effects of co-fermentation with Lactiplantibacillus plantarum IMAU40001 and the commercial starter PYS-010 on the properties of black soybean compound fermented milk (BSCFM). Specifically, the fermentation characteristics, viable bacterial counts, texture, sensory attributes, and metabolomic profiles of BSCFM were evaluated following co-fermentation. Notably, co-fermentation enhanced water-holding capacity and textural properties, while maintaining high probiotic viability (>10⁶ CFU/mL). Sensory evaluation indicated that co-fermentation improved the overall balance of texture in BSCFM. Non-targeted metabolomic analysis revealed an increased abundance of bioactive metabolites, including flavonoids and amino acids. KEGG pathway analysis indicated the enhanced metabolism of amino acids, lipids, and plant secondary metabolites. These results suggest that black soybean serves as a rich source of functional precursors that, upon co-fermentation, facilitate the biosynthesis of health-promoting compounds. Overall, co-fermentation with IMAU40001 and PYS-010 improves the structural, sensory, and functional properties of BSCFM, offering a promising strategy for the development of functional fermented dairy products. Full article