Search Results (85)

The increasing demand for sustainable agriculture has accelerated research into eco-friendly plant health management, particularly through natural substances rich in bioactive compounds. In this study, various substances, including essential oils, extracts from Aloe vera, artichoke and ornamental plants, by-products from beer and coffee processing, and selected commercial formulations including biostimulants and a plant strengthener, were evaluated for their antimicrobial properties and ability to trigger plant defenses. Notably, Agapanthus spp. exhibited strong antifungal activity against the fungus Botrytis cinerea (Bc), while thyme, tea tree, and lavender essential oils were effective against both Bc and the bacterium Pseudomonas syringae pv. tomato (Pst). Greenhouse trials on tomato plants demonstrated the protective effects of A. vera gel and ornamental plant extracts against Bc and Potato virus Y (PVY), while coffee and artichoke extracts were effective against Pst. An alginate-based formulation containing thyme oil showed enhanced in planta efficacy against the three pathogens. Gene expression analyses revealed early upregulation of PR-1 and PR-4, especially with alginate treatments and A. vera gel at 12 h post-treatment (hpt) while coffee extract triggered the strongest late response at 72 hpt. These findings highlight the potential of plant-derived substances in promoting sustainable plant disease management through both direct antimicrobial action and immune system activation. Full article

Viral infections and their vector dynamics pose a major threat to potatoes (Solanum tuberosum L.) worldwide, urgently needing an integrated understanding of the molecular and ecological interactions in this tripartite system. This review describes the major potato viruses, namely potato virus Y (PVY), the potato leafroll virus (PLRV), and potato virus X (PVX), with an emphasis on their infection and replication strategies in plants, as well as their movement within them. It also discusses plant responses to these viruses by uncovering RNA silencing, resistance (R) genes, and hormonal signaling. The complex dynamics of virus–vector interactions are discussed, considering the modes of transmission-persistent, non-persistent and semi-persistent—the role of viral proteins such as HC-Pro in determining vector specificity and adaptations in vectors that facilitate virus dissemination. This article discusses how vectors select potato plants, with an emphasis on the role played by plant-excreted volatiles and vector-applied saliva in plant defense. It also discusses host genes that contribute to vector resistance. This review provides an overview of the interactions between potato plants, viruses, and vectors and shows how viruses influence plant–vector interactions, the molecular pathways shared, and the altered gene expression profiles due to these interactions. The review offers an integrated perspective essential for developing sustainable and precise control strategies against potato viral pathogens under changing climatic conditions. Full article

Our knowledge of the molecular data on viruses infecting potato (Solanum tuberosum) and its weeds in Indonesia still needs to be expanded. Thirteen potato leaves, together with one carrot (Daucus carota subsp. sativus) and one Oxalis latifolia leaves grew adjacent to potato fields were sampled in West, Central, and East Java Provinces of Indonesia to be tested using RT-PCR with universal primers to monitor the presence of potyviruses, carlaviruses, and begomoviruses in the surveyed regions. According to the test results and BLAST nucleotide analysis, four potato samples were found to be infected by potato virus Y (PVY, Potyvirus). All samples tested negative for carlaviruses and begomoviruses. Both phylogenetic trees constructed by MEGA11 software based on partial coat protein and partial coat protein + 3′-UTR sequences demonstrated that the four new PVY isolates belong to strain N. Nucleotide and amino acid homology analysis determined that all four new and 12 other strain N isolates registered in NBCI GenBank were identical at the observed genome region, suggested the same origin of Indonesian isolates. This study improved our understanding of the variation in PVY isolates in Indonesia and highlighted the need for tight surveillance since the country imports most of its tubers used as planting material. Full article

The potato is the third most important crop in the world, and more than 375 million metric tonnes of potatoes are produced globally on an annual basis. Potato Virus Y (PVY) poses a significant threat to the production of seed potatoes, resulting in economic losses and risks to food security. Current detection methods for PVY typically rely on serological assays for leaves and PCR for tubers; however, these processes are labor-intensive, time-consuming, and not scalable. In this proof-of-concept study, we propose the use of unmanned aerial vehicles (UAVs) integrated with hyperspectral cameras, including a downwelling irradiance sensor, to detect the PVY in commercial growers’ fields. We used a 400–1000 nm visible and near-infrared (Vis-NIR) hyperspectral camera and trained several standard machine learning and deep learning models with optimized hyperparameters on a curated dataset. The performance of the models is promising, with the convolutional neural network (CNN) achieving a recall of 0.831, reliably identifying the PVY-infected plants. Notably, UAV-based imaging maintained performance levels comparable to ground-based methods, supporting its practical viability. The hyperspectral camera captures a wide range of spectral bands, many of which are redundant in identifying the PVY. Our analysis identified five key spectral regions that are informative in identifying the PVY. Two of them are in the visible spectrum, two are in the near-infrared spectrum, and one is in the red-edge spectrum. This research shows that early-season PVY detection is feasible using UAV hyperspectral imaging, offering the potential to minimize economic and yield losses. It also highlights the most relevant spectral regions that carry the distinctive signatures of PVY. This research demonstrates the feasibility of early-season PVY detection using UAV hyperspectral imaging and provides guidance for developing cost-effective multispectral sensors tailored to this task. Full article

High-throughput sequencing (HTS) was employed for the first time to investigate plant viruses infecting solanaceous crops, including potato (Solanum tuberosum), tomato (Solanum lycopersicum), and pepper (Capsicum annuum), in Kosovo. Leaf samples showing virus-like symptoms were collected from various regions during the summer of 2023. Based on ribodepleted RNA sequencing and bioinformatics analysis, six viruses were identified: cucumber mosaic virus, broad bean wilt virus 2 (BBWV2), potato virus Y, pepper cryptic virus 2 (PCV2), bell pepper endornavirus (BPEV), and ranunculus white mottle virus. BBWV2, PCV2, and BPEV are reported for the first time in the Balkan region. Virus presence was validated using RT-PCR. Phylogenetic analyses revealed that the identified viral strains did not cluster according to their hosts and geographical origins. CMV and BBWV2 variants exhibited reassortment events, indicating possible local evolution or novel virus introductions. This research highlights the widespread occurrence of mixed infections in pepper plants and highlights the need for additional research into the virus transmission dynamics and potential reservoir hosts. These findings emphasize the need for continuous surveillance and integrated plant protection strategies to mitigate the impacts of viral infections on pepper and other economically important crops in Kosovo. Full article

Tobacco veinal necrosis caused by the potato virus Y (PVY) substantially affects yields and crop quality of tobacco. PVY shows high variability in virulence due to numerous mutations and recombinations. The types of resistance available for tobacco include the va type, effective against some PVY isolates but succumbing to others, and the Nicotiana africana-derived type, fully effective in its native genetic milieu but limited to varying degrees of tolerance when transferred to N. tabacum. The objective of this study was to evaluate the pyramiding potential of these two sources of resistance in alloploid hybrids of Nicotiana tabacum x N. africana. To this end, amphidiploids involving N. tabacum cvs. VAM and Wiślica, each being the carrier of a different variant of the va gene, were created and advanced from F₁ to two subsequent selfed generations and to BC₁ generation with either VAM or Wiślica as the recurrent N. tabacum parent. The hybrid populations thus produced were challenged with two PVY necrotic isolates, IUNG 23 and IUNG 20, mild and severe isolate belonging to the PVY^N-Wi and PVY^NTN groups, respectively. The mild isolate failed to infect any of the hybrids or parental species. The hybrids varied in their response to IUNG 20. The F₁ and F₂ populations were composed of asymptomatic hosts to PVY and of those showing mild vein clearing but no necrotic plants. There was a progressive increase in ability to resist PVY in successive amphidiploid generations, with 30 and 10% of fully resistant plants appearing in the F₃ amphidiploids involving VAM and Wiślica. Further research is needed to account for the appearance of segregants completely resistant to PVY, since neither N. africana factor is fully expressed in N. tabacum, nor do the va alleles confer resistance against PVY^NTN isolates. Full article

Angelica sinensis is a perennial herbaceous species mainly cultivated in the Gansu, Yunnan, and Qinghai provinces of China, and its dried roots have been widely used for nourishing blood and harmonizing vital energy, largely relying on its bioactive compounds (e.g., alkylphthalides, polysaccharides, and flavonoids). In recent years, viral diseases have been suspected to be present in A. sinensis in field cultivation. In order to reveal the infection status and causes, a survey and the identification of viral diseases and their influence on the yield and quality of A. sinensis were conducted in four different counties of Gansu province. The results showed viral disease rates of ca. 21% to 37% for potato virus Y (PVY) and tomato mosaic virus (ToMV), as well as ca. 2.8- to 8.9-fold decreases in root yield on a unit-area basis; meanwhile, the contents of the main bioactive compounds (i.e., ferulic acid, ligustilide, and polysaccharides) were significantly lower in the virus-infected plants (VIPs) compared with the virus-free plants (VFPs); there were significant positive relationships of the viral disease rate with planting density and expression levels of the PVY-coat protein (CP) and ToMV-CP genes (p < 0.01). The above-mentioned observations indicate that it is necessary and urgent to take measures (e.g., controlling plant density, rational rotation, and using virus-free seedlings) to prevent the spread of plant viruses. Full article

Viral diseases of potatoes are among the main problems causing deterioration in the quality of tubers and loss of yield. The growth and development of potato plants largely depend on soil moisture. Prevention strategies require comprehensive protection against pathogens and abiotic stresses, including modeling the beneficial microbiome of agroecosystems combining microorganisms and immunostimulants. Chitosan and its derivatives have great potential for use in agricultural engineering due to their ability to induce plant immune responses. The effect of chitosan conjugate with caffeic acid (ChCA) in combination with Bacillus subtilis 47 on the transcriptional activity of PR protein genes and changes in the proteome of potato plants during potato virus Y (PVY) infection and drought was studied. The mechanisms of increasing the resistance of potato plants to PVY and lack of moisture are associated with the activation of transcription of genes encoding PR proteins: the main protective protein (PR-1), chitinase (PR-3), thaumatin-like protein (PR-5), protease inhibitor (PR-6), peroxidase (PR-9), and ribonuclease (PR-10), as well as qualitative and quantitative changes in the plant proteome. The revealed activation of the expression of marker genes of systemic acquired resistance and induced systemic resistance under the influence of combined treatment with B. subtilis and chitosan conjugate indicate that, in potato plants, the formation of resistance to viral infection in drought conditions proceeds synergistically. By two-dimensional electrophoresis of S. tuberosum leaf proteins followed by MALDI-TOF analysis, 10 proteins were identified, the content and composition of which differed depending on the experiment variant. In infected plants treated with ChCA, the synthesis of proteinaceous RNase P 1 and oxygen-evolving enhancer protein 2 was enhanced in conditions of normal humidity, and 20 kDa chaperonin and TMV resistance protein N-like was enhanced in conditions of lack of moisture. The virus coat proteins were detected, which intensively accumulated in the leaves of plants infected with potato Y-virus. ChCA treatment reduced the content of these proteins in the leaves, and in plants treated with ChCA in combination with Bacillus subtilis, viral proteins were not detected at all, both in conditions of normal humidity and lack of moisture, which suggests the promising use of chitosan derivatives in combination with B. subtilis bacteria in the regulation of plant resistance. Full article

Potato virus Y (PVY) is a major tobacco (Nicotiana tabacum L.) pathogen that causes severe crop losses. We studied the influence of meteorological factors and a population of twelve aphid species on the development of PVY in field-grown tobacco from 1996 to 2010 in Poland. Three PVY-susceptible tobacco varieties were used in the study. The mean virus incidence ranged from 18% in 2010 to almost 99% in 1996, 2004, and 2009. For determining the relationship between tobacco plant infection and meteorological conditions and aphid populations, logistic regression analysis was used. It was found that the probability of PVY infection is significantly dependent on the average air temperature, relative humidity, number of days with an average temperature of at least 25 °C, and the abundance of Aphis fabae and Brachycaudus helichrysi. The probability of infection of tobacco plants with potato virus Y decreased with increasing air temperature and relative humidity. In addition, with each subsequent day with a temperature of at least 25 °C, the risk of infection decreased by 24%. Furthermore, it was often observed that high populations of Aphis fabae and Brachycaudus helichrysi were associated with a high incidence of virus infection in tobacco plants. Full article

Potato virus Y (PVY) is one of the most important constraints to potato production worldwide. There is an increasing occurrence of recombinant PVY strains PVY^NTN and PVY^N-Wi and a decline in the incidence of the nonrecombinant PVY^O. We hypothesized that this may be due to the ability of these recombinant strains to antagonize and/or outcompete PVY^O in mixed infections. To determine this, we investigated interactions between PVY^O and three recombinant PVY strains common in North America: PVY^NTN, PVY^N-Wi, and PVY^N:O. Overall, our study showed that these interactions are tissue-dependent. Specifically, PVY^NTN, the main causal agent of potato tuber necrotic ringspot disease (PTNRD), was found to be more adaptable than PVY^O, especially in potato leaves due, at least in part, to the Ny gene that confers hypersensitive resistance (HR) to PVY^O. Furthermore, PVY^N-Wi was found to repress PVY^O in potato tubers but act synergistically in potato leaves. The PVY^O-induced foliage necrosis in cultivar ‘Ranger Russet’ was observed to be more severe in plants co-infected by PVY^N-Wi and PVY^N:O, respectively, resulting in plant death. Strikingly, this PVY^O -induced necrosis was suppressed by PVY^NTN in doubly infected plants. These interactions may, at least partially, explain the decreasing incidence of PVY^O in United States potato production regions, especially given that many cultivars contain the Ny gene, which likely limits PVY^O enabling PVY^NTN and PVY^N-Wi to outcompete. We also found that replication and cell-to-cell movement of these PVY strains in tubers at 4 °C was similar to levels at ambient temperature. Full article

The external application of double-stranded RNA (dsRNA) has recently been developed as a non-transgenic approach for crop protection against pests and pathogens. This novel and emerging approach has come to prominence due to its safety and environmental benefits. It is generally assumed that the mechanism of dsRNA-mediated antivirus RNA silencing is similar to that of natural RNA interference (RNAi)-based defence against RNA-containing viruses. There is, however, no direct evidence to support this idea. Here, we provide data on the high-throughput sequencing (HTS) analysis of small non-coding RNAs (sRNA) as hallmarks of RNAi induced by infection with the RNA-containing potato virus Y (PVY) and also by exogenous application of dsRNA which corresponds to a fragment of the PVY genome. Intriguingly, in contrast to PVY-induced production of discrete 21 and 22 nt sRNA species, the externally administered PVY dsRNA fragment led to generation of a non-canonical pool of sRNAs, which were present as ladders of ~18–30 nt in length; suggestive of an unexpected sRNA biogenesis pathway. Interestingly, these non-canonical sRNAs are unable to move systemically and also do not induce transitive amplification. These findings may have significant implications for further developments in dsRNA-mediated crop protection. Full article

Many plant virus outbreaks have been recorded in the last two decades, threatening food security around the world. During pepper production seasons in 2008, 2014, and 2022, virus outbreaks were reported from Lara (western) and Miranda (central) states in Venezuela. Three hundred seventy-three plants exhibiting virus-like symptoms were collected and tested for virus infection through reverse transcription PCR (RT-PCR). The most prevalent viruses during the 2008 surveys conducted in Lara were potato virus Y (PVY, 66.25%), cucumber mosaic virus (CMV, 57.50%), pepper mild mottle virus (PMMoV, 35%), alfalfa mosaic virus (AMV, 23.75%), and tobacco rattle virus (TRV, 17.50%). This survey revealed for the first time that pepper is a natural host of AMV and TRV in Venezuela. A further, divergent potyvirus isolate was also detected in 23.75% of pepper plants from Lara state. In 2014, a follow-up survey after virus outbreaks reported in Lara and Miranda states also detected this divergent potyvirus isolate in 21.68% of pepper plants, with tomato spotted wilt virus (TSWV) and PMMoV dominating the viral landscape (62.65 and 21.68% of tested plants, respectively). By comparison, the surveys revealed significant changes in viral community composition. The complete capsid protein (CP) sequence of the putative potyvirus was obtained from two pepper samples. According to the Potyvirus taxonomic criteria, these results suggest that the isolate represents a distinct virus species, for which we propose the name “pepper severe mottle virus” (PepSMoV). Virus outbreaks could be attributed to agricultural and environmental factors, such as climate change, the use of wastewater, the use of uncertified seeds, misuse of agricultural chemicals, transmission with food trade networks, and the development of new viral strains due to mutations and recombination and pathogen spillover. This study demonstrates the value of knowledge of the prevalence and distribution of viral species to recommend virus-resistant cultivars to replace susceptible ones, especially in virus hotspot areas. Full article

Potato virus Y, an important viral pathogen of potato, has several genetic variants and geographic distributions which could be affected by environmental factors, aphid vectors, and reservoir plants. PVY is transmitted to virus-free potato plants by aphids and passed on to the next vegetative generations through tubers, but the effects of tuber transmission in PVY is largely unknown. By using high-throughput sequencing, we investigated PVY populations transmitted to potato plants by aphids in different climate zones of Russia, namely the Moscow and Astrakhan regions. We analyzed sprouts from the tubers produced by field-infected plants to investigate the impact of tuber transmission on PVY genetics. We found a significantly higher diversity of PVY isolates in the Astrakhan region, where winters are shorter and milder and summers are warmer compared to the Moscow region. While five PVY types, NTNa, NTNb, N:O, N-Wi, and SYR-I, were present in both regions, SYRI-II, SYRI-III, and 261-4 were only found in the Astrakhan region. All these recombinants were composed of the genome sections derived from PVY types O and N, but no full-length sequences of such types were present. The composition of the PVY variants in the tuber sprouts was not always the same as in their parental plants, suggesting that tuber transmission impacts PVY genetics. Full article

Sugarcane yellow leaf virus (SCYLV), a member of the genus Polerovirus in the family Luteoviridae, causes severe damage and represents a great threat to sugarcane cultivation and sugar industry development. In this study, inoculation of Nicotiana benthamiana plants with a potato virus X (PVX)-based vector carrying the SCYLV P0 gene induced typical mosaic, leaf rolling symptoms and was associated with a hypersensitive-like response (HLR) necrosis symptom, which is accompanied with a systemic burst of H₂O₂ and also leads to higher PVX viral genome accumulation levels. Our results demonstrate that SCYLV P0 is a pathogenicity determinant and plays important roles in disease development. To further explore its function in pathogenic processes, a yeast two-hybrid assay was performed to screen the putative P0-interacting host factors. The recombinant plasmid pGBKT7-P0 was constructed as a bait and transformed into the yeast strain Y2HGold. The ROC22 cultivar (an important parental resource of the main cultivar in China) cDNA prey library was constructed and screened by co-transformation with the P0 bait. We identified 28 potential interacting partners including those involved in the optical signal path, plant growth and development, transcriptional regulation, host defense response, and viral replication. To our knowledge, this is the first time we have reported the host proteins interacting with the P0 virulence factor encoded by sugarcane yellow leaf virus. This study not only provides valuable insights into elucidating the molecular mechanism of the pathogenicity of SCYLV, but also sheds light on revealing the probable new pathogenesis of Polerovirus in the future. Full article

Biological treatments may be employed to combat viral plant infections. In this study, Trichoderma viride was applied as a biocontrol agent to enhance the systemic resistance of potato plants against potato virus Y (PVY). T. viride isolate Tvd44 (OQ991378) was isolated and molecularly characterized before being used as an agent against PVY. The foliar application of Tvd44 on PVY-inoculated potatoes significantly promoted plant growth, height, roots, and number of leaves. Results also showed that the levels of peroxidase (POX), polyphenol oxidase (PPO), total proteins, and chlorophyll increased in potato leaves 21 days post-inoculation compared to untreated plants. Results of qPCR assays conducted on Tvd44-treated plants exhibited a reduction in PVY-CP accumulation levels up to 18.76-fold compared to untreated plants (101.82-fold). qPCR results also showed that defense-related genes (PR-1, POD, PAL, CHS, and HQT) were highly expressed in all Tvd44-treated plants. Three compounds: thiocarbamic acid, N,N-dimethyl, S-1,3-diphenyl-2-butenyl ester; 1,1-dicyano-2-methyl-4-(p-cyanophenyl) propane; and trans-[(2,3-diphenylcyclopropyl)methyl] phenyl sulfide were the most abundant compounds detected in the ethyl acetate extract of Tvd44-culture filtrate using GC–MS analysis. Our finding supports the efficacy of T. viride isolate Tvd44 as a potential agent that can successfully control PVY infections in potatoes and increase the productivity of the crop. Full article