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Keywords = probabilistic Boolean network modeling

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11 pages, 1449 KiB  
Article
A Learning Probabilistic Boolean Network Model of a Manufacturing Process with Applications in System Asset Maintenance
by Pedro Juan Rivera Torres, Chen Chen, Sara Rodríguez González and Orestes Llanes Santiago
Entropy 2025, 27(5), 463; https://doi.org/10.3390/e27050463 - 25 Apr 2025
Viewed by 447
Abstract
Probabilistic Boolean Networks (PBN) can model the dynamics of complex biological systems, as well as other non-biological systems like manufacturing systems and smart grids. In this proof-of-concept paper, we propose a PBN architecture with a learning process that significantly enhances fault and failure [...] Read more.
Probabilistic Boolean Networks (PBN) can model the dynamics of complex biological systems, as well as other non-biological systems like manufacturing systems and smart grids. In this proof-of-concept paper, we propose a PBN architecture with a learning process that significantly enhances fault and failure prediction in manufacturing systems. This concept was tested using a PBN model of an ultrasound welding process and its machines. Through various experiments, the model successfully learned to maintain a normal operating state. Leveraging the complex properties of PBNs, we utilize them as an adaptive learning tool with positive feedback, demonstrating that these networks may have broader applications than previously recognized. This multi-layered PBN architecture offers substantial improvements in fault detection performance within a positive feedback network structure that shows greater noise tolerance than other methods. Full article
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21 pages, 4632 KiB  
Article
A Learning Probabilistic Boolean Network Model of a Smart Grid with Applications in System Maintenance
by Pedro Juan Rivera Torres, Chen Chen, Jaime Macías-Aguayo, Sara Rodríguez González, Javier Prieto Tejedor, Orestes Llanes Santiago, Carlos Gershenson García and Samir Kanaan Izquierdo
Energies 2024, 17(24), 6399; https://doi.org/10.3390/en17246399 - 19 Dec 2024
Cited by 1 | Viewed by 1236
Abstract
Probabilistic Boolean Networks can capture the dynamics of complex biological systems as well as other non-biological systems, such as manufacturing systems and smart grids. In this proof-of-concept manuscript, we propose a Probabilistic Boolean Network architecture with a learning process that significantly improves the [...] Read more.
Probabilistic Boolean Networks can capture the dynamics of complex biological systems as well as other non-biological systems, such as manufacturing systems and smart grids. In this proof-of-concept manuscript, we propose a Probabilistic Boolean Network architecture with a learning process that significantly improves the prediction of the occurrence of faults and failures in smart-grid systems. This idea was tested in a Probabilistic Boolean Network model of the WSCC nine-bus system that incorporates Intelligent Power Routers on every bus. The model learned the equality and negation functions in the different experiments performed. We take advantage of the complex properties of Probabilistic Boolean Networks to use them as a positive feedback adaptive learning tool and to illustrate that these networks could have a more general use than previously thought. This multi-layered PBN architecture provides a significant improvement in terms of performance for fault detection, within a positive-feedback network structure that is more tolerant of noise than other techniques. Full article
(This article belongs to the Section A1: Smart Grids and Microgrids)
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18 pages, 4461 KiB  
Article
A New Evolutionary Approach to Optimal Sensor Placement in Water Distribution Networks
by Andrea Ponti, Antonio Candelieri and Francesco Archetti
Water 2021, 13(12), 1625; https://doi.org/10.3390/w13121625 - 9 Jun 2021
Cited by 18 | Viewed by 3583
Abstract
The sensor placement problem is modeled as a multi-objective optimization problem with Boolean decision variables. A new multi objective evolutionary algorithm (MOEA) is proposed for approximating and analyzing the set of Pareto optimal solutions. The evaluation of the objective functions requires the execution [...] Read more.
The sensor placement problem is modeled as a multi-objective optimization problem with Boolean decision variables. A new multi objective evolutionary algorithm (MOEA) is proposed for approximating and analyzing the set of Pareto optimal solutions. The evaluation of the objective functions requires the execution of a hydraulic simulation model of the network. To organize the simulation results a data structure is proposed which enables the dynamic representation of a sensor placement and its fitness as a heatmap. This allows the definition of information spaces, in which the fitness of a placement can be represented as a matrix or, in probabilistic terms as a histogram. The key element in the new algorithm is this probabilistic representation which is embedded in a space endowed with a metric based on a specific notion of distance. Among several distances between probability distributions the Wasserstein (WST) distance has been selected: WST has enabled to derive new genetic operators, indicators of the quality of the Pareto set and criteria to choose among the Pareto solutions. The new algorithm has been tested on a benchmark water distribution network with two objective functions showing an improvement over NSGA-II, in particular for low generation counts, making it a good candidate for expensive black-box multi-objective optimization Full article
(This article belongs to the Section Urban Water Management)
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23 pages, 981 KiB  
Article
Property Checking with Interpretable Error Characterization for Recurrent Neural Networks
by Franz Mayr, Sergio Yovine and Ramiro Visca
Mach. Learn. Knowl. Extr. 2021, 3(1), 205-227; https://doi.org/10.3390/make3010010 - 12 Feb 2021
Cited by 10 | Viewed by 3658
Abstract
This paper presents a novel on-the-fly, black-box, property-checking through learning approach as a means for verifying requirements of recurrent neural networks (RNN) in the context of sequence classification. Our technique steps on a tool for learning probably approximately correct (PAC) deterministic finite automata [...] Read more.
This paper presents a novel on-the-fly, black-box, property-checking through learning approach as a means for verifying requirements of recurrent neural networks (RNN) in the context of sequence classification. Our technique steps on a tool for learning probably approximately correct (PAC) deterministic finite automata (DFA). The sequence classifier inside the black-box consists of a Boolean combination of several components, including the RNN under analysis together with requirements to be checked, possibly modeled as RNN themselves. On one hand, if the output of the algorithm is an empty DFA, there is a proven upper bound (as a function of the algorithm parameters) on the probability of the language of the black-box to be nonempty. This implies the property probably holds on the RNN with probabilistic guarantees. On the other, if the DFA is nonempty, it is certain that the language of the black-box is nonempty. This entails the RNN does not satisfy the requirement for sure. In this case, the output automaton serves as an explicit and interpretable characterization of the error. Our approach does not rely on a specific property specification formalism and is capable of handling nonregular languages as well. Besides, it neither explicitly builds individual representations of any of the components of the black-box nor resorts to any external decision procedure for verification. This paper also improves previous theoretical results regarding the probabilistic guarantees of the underlying learning algorithm. Full article
(This article belongs to the Special Issue Selected Papers from CD-MAKE 2020 and ARES 2020)
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9 pages, 228 KiB  
Article
Construction Method of Probabilistic Boolean Networks Based on Imperfect Information
by Katsuaki Umiji, Koichi Kobayashi and Yuh Yamashita
Algorithms 2019, 12(12), 268; https://doi.org/10.3390/a12120268 - 12 Dec 2019
Cited by 2 | Viewed by 3552
Abstract
A probabilistic Boolean network (PBN) is well known as one of the mathematical models of gene regulatory networks. In a Boolean network, expression of a gene is approximated by a binary value, and its time evolution is expressed by Boolean functions. In a [...] Read more.
A probabilistic Boolean network (PBN) is well known as one of the mathematical models of gene regulatory networks. In a Boolean network, expression of a gene is approximated by a binary value, and its time evolution is expressed by Boolean functions. In a PBN, a Boolean function is probabilistically chosen from candidates of Boolean functions. One of the authors has proposed a method to construct a PBN from imperfect information. However, there is a weakness that the number of candidates of Boolean functions may be redundant. In this paper, this construction method is improved to efficiently utilize given information. To derive Boolean functions and those selection probabilities, the linear programming problem is solved. Here, we introduce the objective function to reduce the number of candidates. The proposed method is demonstrated by a numerical example. Full article
(This article belongs to the Special Issue Biological Networks II)
18 pages, 1159 KiB  
Article
A Max-Flow Based Algorithm for Connected Target Coverage with Probabilistic Sensors
by Anxing Shan, Xianghua Xu, Zongmao Cheng and Wensheng Wang
Sensors 2017, 17(6), 1208; https://doi.org/10.3390/s17061208 - 25 May 2017
Cited by 10 | Viewed by 3758
Abstract
Coverage is a fundamental issue in the research field of wireless sensor networks (WSNs). Connected target coverage discusses the sensor placement to guarantee the needs of both coverage and connectivity. Existing works largely leverage on the Boolean disk model, which is only a [...] Read more.
Coverage is a fundamental issue in the research field of wireless sensor networks (WSNs). Connected target coverage discusses the sensor placement to guarantee the needs of both coverage and connectivity. Existing works largely leverage on the Boolean disk model, which is only a coarse approximation to the practical sensing model. In this paper, we focus on the connected target coverage issue based on the probabilistic sensing model, which can characterize the quality of coverage more accurately. In the probabilistic sensing model, sensors are only be able to detect a target with certain probability. We study the collaborative detection probability of target under multiple sensors. Armed with the analysis of collaborative detection probability, we further formulate the minimum ϵ-connected target coverage problem, aiming to minimize the number of sensors satisfying the requirements of both coverage and connectivity. We map it into a flow graph and present an approximation algorithm called the minimum vertices maximum flow algorithm (MVMFA) with provable time complex and approximation ratios. To evaluate our design, we analyze the performance of MVMFA theoretically and also conduct extensive simulation studies to demonstrate the effectiveness of our proposed algorithm. Full article
(This article belongs to the Section Sensor Networks)
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16 pages, 219 KiB  
Review
Optimization-Based Approaches to Control of Probabilistic Boolean Networks
by Koichi Kobayashi and Kunihiko Hiraishi
Algorithms 2017, 10(1), 31; https://doi.org/10.3390/a10010031 - 22 Feb 2017
Cited by 15 | Viewed by 5022
Abstract
Control of gene regulatory networks is one of the fundamental topics in systems biology. In the last decade, control theory of Boolean networks (BNs), which is well known as a model of gene regulatory networks, has been widely studied. In this review paper, [...] Read more.
Control of gene regulatory networks is one of the fundamental topics in systems biology. In the last decade, control theory of Boolean networks (BNs), which is well known as a model of gene regulatory networks, has been widely studied. In this review paper, our previously proposed methods on optimal control of probabilistic Boolean networks (PBNs) are introduced. First, the outline of PBNs is explained. Next, an optimal control method using polynomial optimization is explained. The finite-time optimal control problem is reduced to a polynomial optimization problem. Furthermore, another finite-time optimal control problem, which can be reduced to an integer programming problem, is also explained. Full article
(This article belongs to the Special Issue Biological Networks)
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