Search Results (212)

Chloromethane (CH₃Cl) is a key chlorinated organic compound not only in atmospheric chemistry, but also in the field of molecular astrophysics and a possible biosignature in exoplanetary atmospheres. While the spectroscopic characterization of the main isotopic species has been addressed in great detail, that of its isotopologues remains incomplete. This work aims at filling this gap by focusing on the bideuterated species, CHD₂Cl, and exploiting both rotational and vibrational spectroscopy in combination with state-of-the-art quantum-chemical (QC) calculations. First, the rotational spectrum of CHD₂Cl has been measured in the millimeter-wave domain, allowing the accurate determination of several spectroscopic constants for four isotopologues, namely ¹²CHD₂³⁵Cl, ¹²CHD₂³⁷Cl, ¹³CHD₂³⁵Cl, and ¹³CHD₂³⁷Cl. The newly determined rotational constants have been used to refine the semi-experimental equilibrium structure of chloromethane. Secondly, the vibrational analysis, supported by high-level QC predictions of vibrational energies, has been conducted in the 500–6200 cm⁻¹ infrared (IR) region, enabling the identification of more than 30 bands including fundamental, overtone, and combination transitions. Finally, chloromethane’s radiative efficiency has been simulated using the QC IR absorption cross-sections, and the effects of isotopologue distribution on the predicted radiative properties have been investigated. All these findings greatly improve the comprehension of the spectroscopic properties of bideuterated chloromethane isotopologues, and of chloromethane in general, and facilitate future terrestrial and extraterrestrial studies. Full article

As a crucial parameter in Mössbauer spectroscopy, nuclear quadrupole splitting (NQS) exhibits a strong dependence on quantum chemistry methods, which makes accurate theoretical predictions challenging. Meanwhile, the continuous emergence of new density functionals presents opportunities to advance current NQS research. In this study, we evaluate the performance of eleven hybrid density functionals and twelve double-hybrid density functionals, selected from widely used functionals and newly developed functionals, in predicting the NQS values of the ⁵⁷Fe nuclide for 32 iron-containing molecules within about 70 atoms. The calculations have incorporated scalar relativistic effects using the exact two-component (X2C) Hamiltonian. In general, the double-hybrid functional PBE-0DH demonstrates superior performance compared to the experimental values, achieving a mean absolute error (MAE) of 0.20 mm/s. Meanwhile, rSCAN38 is the best hybrid functional for our database with an MAE = 0.25 mm/s, and it offers a significant advantage in computational efficiency over PBE-0DH. The $+/-$ sign of NQS has also been considered in our error statistics when it has a clear physical meaning; if neglected, the errors of many functionals decrease, but PBE-0DH and rSCAN38 remain unaffected. Notably, when calculating ferrocene [Fe(C₅H₅)₂], which involves strong static correlations, all hybrid functionals that incorporate more than 10% exact exchange fail, while several double-hybrid functionals continue to deliver reliable results. In addition, we encountered two particularly challenging species characterized by strong static correlations: [Fe(H₂O)₅NO]²+ and FeO₂⁻-porphyrin. Unfortunately, none of the density functionals tested in our study yielded satisfactory results for the two cases since the density functional theory (DFT) is a single-determinant approach, and it is imperative to explore large-scale multi-configurational methods for these species. This research offers valuable guidance for selecting density functionals in Mössbauer NQS calculations and serves as a reference point for the future development of new density functionals. Full article

We introduce a method for calculating the atomic forces of a molecular or extended system in an excited state described through the GW-BSE approach within the Tamm–Dancoff approximation. The derivative of the so-called excitonic Hamiltonian is obtained by finite differences and its application to the excited state is made possible through the use of suitable projectors. The scheme is implemented with the batch representation of the electron–hole amplitudes, allowing for avoiding sums over empty one-particle orbitals. The geometries of small excited molecules, namely, CO and CH₂O, were in excellent agreement with the results from quantum chemistry methods. Full article

The corrosion of low-alloy steel in ethanolamine solution, simulating steam generator chemistry, is studied by in situ chronopotentiometry and electrochemical impedance spectroscopy combined with ex situ analysis of the obtained oxide films and model calculations. Hydrodynamic calculations of the proposed setup to study flow-assisted corrosion demonstrate that turbulent conditions are achieved. Quantum chemical calculations indicate the adsorption orientation of ethanolamine on the oxide surface. Interpretation of impedance spectra with a kinetic approach based on the mixed-conduction model enabled estimating the rate constants of oxidation at the alloy–oxide interface, as well as charge transfer and ionic transport resistances of the corrosion process. In turbulent conditions, the dissolution of Fe oxide and ejection of Fe cations are enhanced, leading to Cr enrichment in the oxide and alteration of its electronic and electrochemical properties that influence the corrosion rate. Full article

Homopolyatomic cations of the main group elements and of the element sulfur, in particular, are used as tutorial examples to teach structure and bonding in inorganic chemistry. So far, the cations [S₄]²⁺, [S₈]²⁺, [S₁₉]²⁺, [S₅]^•+, and [S₈]^•+ are known experimentally. In this report, the generation and crystal structure determination of the salt Na₂[S₂₀]₂[B₁₂Cl₁₂]₃, containing the new homopolyatomic sulfur cation [S₂₀]²⁺, is reported. The structure of the latter cation consists of two seven-membered homocycles, which are bridged by a six-membered sulfur chain. This structure is strongly related to that of [S₁₉]²⁺. The heptasulfur rings show pronounced bond alternation. Comparison with the experimental structures of [S₇X]⁺ (X = I, Br) and the application of quantum chemical calculations show unambiguously that the observed structural features are intrinsic properties of the cationic cyclo-heptasulfur moieties. The latter can occupy different conformations, which only slightly differ in energy. Charge delocalization and negative hyperconjugation contribute to the stability of the observed structures. The discovery of the [S₂₀]²⁺ cation fits well into range of known homopolyatomic sulfur cations, which can be classified by their averaged oxidation state of sulfur. Full article

Molecular simulations offer valuable insights into thermosetting polymers’ microstructures and interactions with small molecules, aiding in the development of advanced materials. In this study, we design two cyanate resin models featuring monomers of different sizes and employ a previously developed method to generate crosslinked structures. We then analyze their crosslinking processes and physicochemical properties. Using quantum chemistry calculations and a GCMC/MD approach, we investigate CO₂ adsorption. Our results show that monomer size does not significantly affect the crosslinking process and provides a degree of polymerization as 83.8 ± 0.3% vs. 76.7 ± 1.4%, but it does influence key properties, such as the glass transition temperature (520 K vs. 420 K) and Young’s modulus (2.32 GPa vs. 1.77 GPa). Moreover, CO₂ adsorption differs between the two models: the introduction of propyl ether moieties lowers by around 70% CO₂ uptake, indicating that specific adsorption sites impact gas adsorption. This study demonstrates a promising strategy for designing and optimizing thermosetting polymers with controllable gas separation and storage capabilities. Full article

Epichlorohydrin is used as an intermediate for the synthesis of polymers and, more particularly, epoxy adhesives. The traditional process involves the cleavage of the carbon-chlorine bond in an alkaline solution. Here, we investigate the breakage of this bond induced by low-energy (<10 eV) electrons. We show the production of the chlorine anion via a resonant process at different energies. The experimental observations are completed by quantum chemistry calculations of the involved molecular orbitals in the formation of the precursor temporary anions, and their decay mechanisms are discussed in terms of the complex potential energy curve crossing network. The gained information may potentially contribute to a strategy of synthesis by other means where low-energy electrons are implicated, i.e., cold plasmas or even scanning tunnelling microscope for which the bond breakage can be controlled by the energy of the colliding electrons. Full article

There is compelling evidence that the absorption of low-energy UV radiation directly by DNA in solution generates guanine radicals with quantum yields that are strongly dependent on the secondary structure. Key players in this unexpected phenomenon are the photo-induced charge transfer (CT) states, in which an electric charge has been transferred from one nucleobase to another. The present work examines the factors affecting the population of these states during electronic relaxation. It focuses on two dinucleotides with opposite orientation: 5′-dApdG-3′ (AG) and 5′-dGpdA-3′ (GA). Quantum chemistry calculations determine their ground state geometry and the associated Franck–Condon states, map their relaxation pathways leading to excited state minima, and compute their absorption spectra. It has been shown that the most stable conformer is anti-syn for AG and anti-anti for GA. The ground state geometry governs both the excited states populated upon UV photon absorption and the type of excited state minima reached during their relaxation. Their fingerprints are detected in the transient absorption spectra recorded with excitation at 266 nm and a time resolution of 30 fs. Our measurements reveal that in the large majority of dinucleotides, chromophore coupling is already operative in the ground state and that the charge transfer process occurs within ~120 fs. The competition among various relaxation pathways affects the quantum yields of the CT state formation in each dinucleotide, which are estimated to be 0.18 and 0.32 for AG and GA, respectively. Full article

We start presenting an overview on recent applications of linear polymers and networks in condensed matter physics, chemistry and biology by briefly discussing selected papers (published within 2022–2024) in some detail. They are organized into three main subsections: polymers in physics (further subdivided into simulations of coarse-grained models and structural properties of materials), chemistry (quantum mechanical calculations, environmental issues and rheological properties of viscoelastic composites) and biology (macromolecules, proteins and biomedical applications). The core of the work is devoted to a review of theoretical aspects of linear polymers, with emphasis on self-avoiding walk (SAW) chains, in regular lattices and in both deterministic and random fractal structures. Values of critical exponents describing the structure of SAWs in different environments are updated whenever available. The case of random fractal structures is modeled by percolation clusters at criticality, and the issue of multifractality, which is typical of these complex systems, is illustrated. Applications of these models are suggested, and references to known results in the literature are provided. A detailed discussion of the reptation method and its many interesting applications are provided. The problem of protein folding and protein evolution are also considered, and the key issues and open questions are highlighted. We include an experimental section on polymers which introduces the most relevant aspects of linear polymers relevant to this work. The last two sections are dedicated to applications, one in materials science, such as fractal features of plasma-treated polymeric materials surfaces and the growth of polymer thin films, and a second one in biology, by considering among others long linear polymers, such as DNA, confined within a finite domain. Full article

An eco-friendly approach was used to fabricate zinc oxide nanoparticles (ZnO NPs) using thyme, Thymus vulgaris L., leaf extract. The produced ZnO nanoparticles were characterized by XRD and SEM analysis. The ZnO NPs showed remarkable adsorption efficiency for tetracycline (TC) from water systems, with a maximum removal rate of 95% under optimal conditions (10 ppm, 0.10 g of ZnO NPs, pH 8.5, and 30 min at 25 °C). The adsorption kinetics followed the pseudo-2nd-order model, and the adsorption process fitted the Temkin isotherm model. The process was spontaneous, endothermic, and primarily chemisorptive. Quantum chemistry calculations, utilizing electrostatic potential maps and HOMO-LUMO gap analysis, have confirmed the stability of the TC clusters. This study suggests that green synthesis using plant extracts presents an opportunity to generate nanoparticles with properties suitable for real-world applications. Full article

In this paper, I present Diatomic, an open-source Excel application that calculates molar thermodynamic properties for diatomic ideal gases. This application is very easy to use and requires only a limited number of molecular constants, which are freely available online. Despite its simplicity, Diatomic provides methodologies and results that are usually unavailable in general quantum chemistry packages. This application uses the general formalism of statistical mechanics, enabling two models to describe the rotational structure and two models to describe the vibrational structure. In this work, Diatomic was used to calculate standard molar thermodynamic properties for a set of fifteen diatomic ideal gases. A special emphasis was placed on the analysis of four properties (standard molar enthalpy of formation, molar heat capacity at constant pressure, average molar thermal enthalpy, and standard molar entropy), which were compared with experimental values. A molecular interpretation for the molar heat capacity at constant pressure, as an interesting pedagogical application of Diatomic, was also explored in this paper. Full article

The FDA approved rufinamide, chemically 1-(2,6-difluorobenzyl)-1H-1,2,3-triazole-4-carboxamide, a triazole-based scaffold, as an anticonvulsant drug in 2008. It is mainly used to treat seizures associated with Lennox–Gastaut Syndrome (LGS). The exact mechanism of rufinamide is unknown, but some literature reported that rufinamide works by regulating the brain’s sodium channel activity, which aids in maintaining the stability of neuronal membranes and averting the overabundance of electrical activity. In the view of computational chemistry, the amide group, fluorine atom, and triazole ring are the specific parts of this skeleton and play an important role in action with the receptor. This study explored computerized simulations of quantum chemistry techniques to investigate the chemical structure and electrical properties of rufinamide. An optimizing structure started the quantum calculation through the B3LYP 6311-G (++, d, p) basis set, explored along with investigating the maximal quantity of electronic charge transfer (N_max), chemical hardness (η), electrostatic potential, chemical potential (µ), and electrophilicity (ω). The Natural Bond Orbital (NBO) analysis-based observation reveals that the molecule’s chemically active regions have hyperconjugated electron interactions within the molecule, which contributes to the molecule’s stability. This study explores the role of the amide group and difluoro-substituted phenyl group in chemical structure and in binding property with the receptor of the Ca²⁺–and voltage-activated K⁺ channel. Full article

In addition to the course of over 20 years of cucurbit-7-uril (CB[7]) in the pharmaceutical industry, the present study brings together the most recent observations from the perspective of ultrasensitive Raman spectroscopy and Density Functional Theory (DFT) related to the interaction of this molecule with atenolol (Ate) enantiomers during the formation of these host–guest complexes. Quantum chemistry calculations based on DFT were first used to understand the interaction geometry between CB[7] and Ate. These results were further confirmed by ultrasensitive vibrational spectroscopy. The spectral features associated with each enantiomer in the presence of CB[7] were analyzed by means of SERS, highlighting distinct interaction profiles. These experimental findings validated quantum chemical calculations, offering a comprehensive understanding of the host–guest interactions at the nanoscale level. Full article

The valorization and dissolution of lignin using ionic liquids (ILs) is critical for developing sustainable biorefineries and a circular bioeconomy. This review aims to critically assess the current state of computational and machine learning methods for understanding and optimizing IL-based lignin dissolution and valorization processes reported since 2022. The paper examines various computational approaches, from quantum chemistry to machine learning, highlighting their strengths, limitations, and recent advances in predicting and optimizing lignin-IL interactions. Key themes include the challenges in accurately modeling lignin’s complex structure, the development of efficient screening methodologies for ionic liquids to enhance lignin dissolution and valorization processes, and the integration of machine learning with quantum calculations. These computational advances will drive progress in IL-based lignin valorization by providing deeper molecular-level insights and facilitating the rapid screening of novel IL-lignin systems. Full article

The focus of pK_a calculations has primarily been on stable molecules, with limited studies comparing radical cations and stable cations. In this study, we comprehensively investigate models with implicit solvent and explicit water molecules, direct and indirect calculation approaches, as well as methods for calculating free energy, solvation energy, and quasi-harmonic oscillator approximation for para-substituted aniline radical cations (R-PhNH₂^•+) and anilinium cations (R-PhNH₃⁺) in the aqueous phase. Properly including and positioning explicit H₂O molecules in the models is important for reliable pK_a predictions. For R-PhNH₂^•+, precise pK_a values were obtained using models with one or two explicit H₂O molecules, resulting in a root mean square error (RMSE) of 0.563 and 0.384, respectively, for both the CBS-QB3 and M062X(D3)/ma-def2QZVP methods. Further improvement was achieved by adding H₂O near oxygen-containing substituents, leading to the lowest RMSE of 0.310. Predicting pK_a values for R-PhNH₃⁺ was more challenging. CBS-QB3 provided an RMSE of 0.349 and the M062X(D3)/ma-def2QZVP method failed to calculate pK_a accurately (RMSE > 1). However, by adopting the double-hybrid functional method and adding H₂O near the R substituent group, the calculations were significantly improved with an average absolute difference (ΔpK_a) of 0.357 between the calculated and experimental pK_a values. Our study offers efficient and reliable methods for pK_a calculations of R-PhNH₂^•+ (especially) and R-PhNH₃⁺ based on currently mature quantum chemistry software. Full article