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21 pages, 4159 KB  
Article
The Key Role of Carbon Materials in the Biological and Photocatalytic Reduction of Nitrates for the Sustainable Management of Wastewaters
by Luisa M. Pastrana-Martínez, Sergio Morales-Torres and Francisco J. Maldonado-Hódar
Catalysts 2025, 15(10), 958; https://doi.org/10.3390/catal15100958 - 6 Oct 2025
Viewed by 413
Abstract
This work explores the influence of material properties and experimental conditions on both biological and photocatalytic nitrate reduction processes. For the biological route, results demonstrate that carbon supports, specifically carbon gels, with open porosity, slight acidity, and high purity enhance E. coli adhesion [...] Read more.
This work explores the influence of material properties and experimental conditions on both biological and photocatalytic nitrate reduction processes. For the biological route, results demonstrate that carbon supports, specifically carbon gels, with open porosity, slight acidity, and high purity enhance E. coli adhesion and promote the formation of highly active bacterial colonies. However, carbon supports of bacteria, produced from waste biomass, emerge as a sustainable and cost-effective alternative, improving scalability and environmental value. The complete conversion of nitrates to nitrites, followed by full nitrite reduction, is achieved under optimized conditions. Photocatalytic nitrate reduction under solar radiation is also proposed as a promising and ecofriendly upgrade method to conventional wastewater treatment. Graphene oxide (GO) was used to enhance the photocatalytic activity of TiO2 nanoparticles for the degradation of nitrates. The efficiency of nitrate reduction is found to be highly sensitive to solution pH and the physicochemical nature of the photocatalyst surface, which governs nitrate interactions through electrostatic forces. TiO2–GO composites achieved up to 80% nitrate removal within 1 h and complete removal of 50 mg/L nitrate within 15 min under optimized conditions. The screening of hole scavengers revealed that formic acid, in combination with the TiO2–GO composite, delivered exceptional performance, achieving complete nitrate reduction in just 15 min under batch conditions at an acidic pH. Full article
(This article belongs to the Special Issue Advances in Photocatalytic Wastewater Purification, 2nd Edition)
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17 pages, 4602 KB  
Article
Typhoon-Induced Wave–Current Coupling Dynamics in Intertidal Zones: Impacts on Protective Device of Ancient Forest Relics
by Lihong Zhao, Dele Guo, Chaoyang Li, Zhengfeng Bi, Yi Hu, Hongqin Liu and Tongju Han
J. Mar. Sci. Eng. 2025, 13(9), 1831; https://doi.org/10.3390/jmse13091831 - 22 Sep 2025
Viewed by 296
Abstract
Extreme weather events, such as typhoons, induce strong wave–current interactions that significantly alter nearshore hydrodynamic conditions, particularly in shallow intertidal zones. This study investigates the influence of wind speed and water depth on wave–current coupling under typhoon conditions in Shenhu Bay, southeastern China—a [...] Read more.
Extreme weather events, such as typhoons, induce strong wave–current interactions that significantly alter nearshore hydrodynamic conditions, particularly in shallow intertidal zones. This study investigates the influence of wind speed and water depth on wave–current coupling under typhoon conditions in Shenhu Bay, southeastern China—a semi-enclosed bay that hosts multiple ancient forest relics within its intertidal zone. A two-tier numerical modeling framework was developed, comprising a regional-scale hydrodynamic model and a localized high-resolution model centered on a protective structure. Validation data were obtained from in situ field observations. Three structural scenarios were tested: fully intact, bottom-blocked, and damaged. Results indicate that wave-induced radiation stress plays a dominant role in enhancing flow velocities when wind speeds exceed 6 m/s, with wave contributions approaching 100% across all water depths. However, the linear relationship between water depth and wave contribution observed under non-typhoon conditions breaks down under typhoon forcing. A critical depth range was identified, within which wave contribution peaked before declining with further increases in depth—highlighting its potential sensitivity to storm energy. Moreover, structural simulations revealed that bottom-blocked devices, although seemingly more enclosed, may be vulnerable to vertical pressure loading due to insufficient water exchange. In contrast, perforated designs facilitate an internal–external hydrodynamic balance, thereby enhancing protective effect. This study provides both theoretical and practical insights into intertidal structure design and paleo-heritage conservation under extreme hydrodynamic stress. Full article
(This article belongs to the Special Issue Advances in Storm Tide and Wave Simulations and Assessment)
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55 pages, 3080 KB  
Review
Controlling Sedimentation in Magnetorheological Fluids Through Ultrasound–Magnetic Field Coupling: Multiscale Analysis and Applications
by Annunziata Palumbo and Mario Versaci
Mathematics 2025, 13(15), 2540; https://doi.org/10.3390/math13152540 - 7 Aug 2025
Viewed by 678
Abstract
Magnetorheological fluids (MRFs) are multiphase materials whose viscosity can be controlled via magnetic fields. However, particle sedimentation undermines their long-term stability. This review examines stabilization strategies based on the interaction between ultrasonic waves and time-varying magnetic fields, analyzed through advanced mathematical models. The [...] Read more.
Magnetorheological fluids (MRFs) are multiphase materials whose viscosity can be controlled via magnetic fields. However, particle sedimentation undermines their long-term stability. This review examines stabilization strategies based on the interaction between ultrasonic waves and time-varying magnetic fields, analyzed through advanced mathematical models. The propagation of acoustic waves in spherical and cylindrical domains is studied, including effects such as cavitation, acoustic radiation forces, and viscous attenuation. The Biot–Stoll poroelastic model is employed to describe saturated granular media, while magnetic field modulation is investigated as a means to balance gravitational settling. The analysis highlights how acousto-magnetic coupling supports the design of programmable and self-stabilizing intelligent fluids for complex applications. Full article
(This article belongs to the Special Issue Engineering Thermodynamics and Fluid Mechanics)
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34 pages, 13488 KB  
Review
Numeric Modeling of Sea Surface Wave Using WAVEWATCH-III and SWAN During Tropical Cyclones: An Overview
by Ru Yao, Weizeng Shao, Yuyi Hu, Hao Xu and Qingping Zou
J. Mar. Sci. Eng. 2025, 13(8), 1450; https://doi.org/10.3390/jmse13081450 - 29 Jul 2025
Viewed by 827
Abstract
Extreme surface winds and wave heights of tropical cyclones (TCs)—pose serious threats to coastal community, infrastructure and environments. In recent decades, progress in numerical wave modeling has significantly enhanced the ability to reconstruct and predict wave behavior. This review offers an in-depth overview [...] Read more.
Extreme surface winds and wave heights of tropical cyclones (TCs)—pose serious threats to coastal community, infrastructure and environments. In recent decades, progress in numerical wave modeling has significantly enhanced the ability to reconstruct and predict wave behavior. This review offers an in-depth overview of TC-related wave modeling utilizing different computational schemes, with a special attention to WAVEWATCH III (WW3) and Simulating Waves Nearshore (SWAN). Due to the complex air–sea interactions during TCs, it is challenging to obtain accurate wind input data and optimize the parameterizations. Substantial spatial and temporal variations in water levels and current patterns occurs when coastal circulation is modulated by varying underwater topography. To explore their influence on waves, this study employs a coupled SWAN and Finite-Volume Community Ocean Model (FVCOM) modeling approach. Additionally, the interplay between wave and sea surface temperature (SST) is investigated by incorporating four key wave-induced forcing through breaking and non-breaking waves, radiation stress, and Stokes drift from WW3 into the Stony Brook Parallel Ocean Model (sbPOM). 20 TC events were analyzed to evaluate the performance of the selected parameterizations of external forcings in WW3 and SWAN. Among different nonlinear wave interaction schemes, Generalized Multiple Discrete Interaction Approximation (GMD) Discrete Interaction Approximation (DIA) and the computationally expensive Wave-Ray Tracing (WRT) A refined drag coefficient (Cd) equation, applied within an upgraded ST6 configuration, reduce significant wave height (SWH) prediction errors and the root mean square error (RMSE) for both SWAN and WW3 wave models. Surface currents and sea level variations notably altered the wave energy and wave height distributions, especially in the area with strong TC-induced oceanic current. Finally, coupling four wave-induced forcings into sbPOM enhanced SST simulation by refining heat flux estimates and promoting vertical mixing. Validation against Argo data showed that the updated sbPOM model achieved an RMSE as low as 1.39 m, with correlation coefficients nearing 0.9881. Full article
(This article belongs to the Section Ocean and Global Climate)
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23 pages, 6713 KB  
Article
Global Aerosol Climatology from ICESat-2 Lidar Observations
by Shi Kuang, Matthew McGill, Joseph Gomes, Patrick Selmer, Grant Finneman and Jackson Begolka
Remote Sens. 2025, 17(13), 2240; https://doi.org/10.3390/rs17132240 - 30 Jun 2025
Viewed by 990
Abstract
This study presents a global aerosol climatology derived from six years (October 2018–October 2024) of the Ice, Cloud, and land Elevation Satellite-2 (ICESat-2) observations, using a U-Net Convolutional Neural Network (CNN) machine learning algorithm for Cloud–Aerosol Discrimination (CAD). Despite ICESat-2’s design primarily as [...] Read more.
This study presents a global aerosol climatology derived from six years (October 2018–October 2024) of the Ice, Cloud, and land Elevation Satellite-2 (ICESat-2) observations, using a U-Net Convolutional Neural Network (CNN) machine learning algorithm for Cloud–Aerosol Discrimination (CAD). Despite ICESat-2’s design primarily as an altimetry mission with a single-wavelength, low-power, high-repetition-rate laser, ICESat-2 effectively captures global aerosol distribution patterns and can provide valuable insights to bridge the observational gap between the Cloud–Aerosol Lidar and Infrared Pathfinder Satellite Observations (CALIPSO) and Earth Cloud, Aerosol and Radiation Explorer (EarthCARE) missions to support future spaceborne lidar mission design. The machine learning approach outperforms traditional thresholding methods, particularly in complex conditions of cloud embedded in aerosol, owing to a finer spatiotemporal resolution. Our results show that annually, between 60°S and 60°N, 78.4%, 17.0%, and 4.5% of aerosols are located within the 0–2 km, 2–4 km, and 4–6 km altitude ranges, respectively. Regional analyses cover the Arabian Sea (ARS), Arabian Peninsula (ARP), South Asia (SAS), East Asia (EAS), Southeast Asia (SEA), the Americas, and tropical oceans. Vertical aerosol structures reveal strong trans-Atlantic dust transport from the Sahara in summer and biomass burning smoke transport from the Savanna during dry seasons. Marine aerosol belts are most prominent in the tropics, contrasting with earlier reports of the Southern Ocean maxima. This work highlights the importance of vertical aerosol distributions needed for more accurate quantification of the aerosol–cloud interaction influence on radiative forcing for improving global climate models. Full article
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18 pages, 3481 KB  
Article
Assessment of Urethral Elasticity by Shear Wave Elastography: A Novel Parameter Bridging a Gap Between Hypermobility and ISD in Female Stress Urinary Incontinence
by Desirèe De Vicari, Marta Barba, Clarissa Costa, Alice Cola and Matteo Frigerio
Bioengineering 2025, 12(4), 373; https://doi.org/10.3390/bioengineering12040373 - 1 Apr 2025
Cited by 2 | Viewed by 1326
Abstract
Stress urinary incontinence (SUI) results from complex anatomical and functional interactions, including urethral mobility, muscle activity, and pelvic floor support. Despite advancements in imaging and electrophysiology, a comprehensive model remains elusive. This study employed shear wave elastography (SWE), incorporating sound touch elastography (STE) [...] Read more.
Stress urinary incontinence (SUI) results from complex anatomical and functional interactions, including urethral mobility, muscle activity, and pelvic floor support. Despite advancements in imaging and electrophysiology, a comprehensive model remains elusive. This study employed shear wave elastography (SWE), incorporating sound touch elastography (STE) and sound touch quantification (STQ) with acoustic radiation force impulse (ARFI) technology, to assess urethral elasticity and bladder neck descent (BND) in women with SUI and continent controls. Between October 2024 and January 2025, 30 women (15 with SUI, 15 controls) underwent transperineal and intravaginal ultrasonography at IRCCS San Gerardo. Statistical analysis, conducted using JMP 17, revealed significantly greater BND in the SUI group (21.8 ± 7.8 mm vs. 10.5 ± 5 mm) and increased urethral stiffness (Young’s modulus: middle urethra, 57.8 ± 15.6 kPa vs. 30.7 ± 6.4 kPa; p < 0.0001). Mean urethral pressure was the strongest predictor of SUI (p < 0.0001). Findings emphasize the role of urethral support and connective tissue integrity in continence. By demonstrating SWE’s diagnostic utility, this study provides a foundation for personalized, evidence-based approaches to SUI assessment and management. Full article
(This article belongs to the Special Issue Medical Imaging Analysis: Current and Future Trends)
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15 pages, 3519 KB  
Article
Study of Propagation Characteristics of Light Beam with Orbital Angular Momentum (OAM) Through a Chiral Medium
by Faroq Razzaz and Muhammad Arfan
Photonics 2025, 12(4), 317; https://doi.org/10.3390/photonics12040317 - 28 Mar 2025
Viewed by 911
Abstract
The interaction of a Gaussian vortex beam (GVB) with metamaterials during its propagation is of significant interest to the optical community. These GVBs are classified as structured light beams that possess orbital angular momentum (OAM). Understanding the behavior of structured light beams is [...] Read more.
The interaction of a Gaussian vortex beam (GVB) with metamaterials during its propagation is of significant interest to the optical community. These GVBs are classified as structured light beams that possess orbital angular momentum (OAM). Understanding the behavior of structured light beams is essential for clarifying fundamental interaction mechanisms with metamaterial structures. So, this work delves into the investigation of the propagation characteristics of a GVB within a chiral material. The analytical expressions for GVB propagating through a chiral medium are obtained by using the extended Huygens–Fresnel diffraction integral formula and the optical ABCD matrix system. In a chiral medium, GVB exhibits a tendency to fragment into a left circularly polarized (LCP) beam and a right circularly polarized (RCP) beam, each following its unique propagation paths. The beam intensity and gradient force are computed and discussed for OAM mode number, beam waist radius, and chirality parameter. This research will be quite helpful for light manipulation, optical sorting, optical radiation force, the radiative transfer process, and optical guiding. Full article
(This article belongs to the Special Issue Vortex Beams: Transmission, Scattering and Application)
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19 pages, 6567 KB  
Article
Investigation of the Noise Emitted from Elevated Urban Rail Transit Paved with Various Resilient Tracks
by Quanmin Liu, Kui Gao, Yifei Miao, Lizhong Song and Si Yue
Materials 2025, 18(5), 968; https://doi.org/10.3390/ma18050968 - 21 Feb 2025
Viewed by 717
Abstract
Based on the dynamic receptance method, a vehicle–track–bridge interaction model was developed to calculate the wheel–rail interaction forces and the forces transmitted to the bridge in an elevated urban rail transit system. A prediction model integrating the finite element method–boundary element method (FEM-BEM) [...] Read more.
Based on the dynamic receptance method, a vehicle–track–bridge interaction model was developed to calculate the wheel–rail interaction forces and the forces transmitted to the bridge in an elevated urban rail transit system. A prediction model integrating the finite element method–boundary element method (FEM-BEM) and the statistical energy analysis (SEA) method was established to obtain the noise from the main girder, track slab, and wheel–rail system for elevated urban rail transit. The calculated results agree well with the measured data. Thereafter, the noise radiation characteristics of a single source and the total noise of elevated urban rail transit systems with resilient fasteners, trapezoidal sleepers, and steel spring floating slabs were investigated. The results demonstrate that the noise prediction model for elevated urban rail transit that was developed in this study is effective. The diversity of track forms altered the noise radiation field of elevated urban rail transit systems significantly. Compared to monolithic track beds, where the fastener stiffness is assumed to be 60 × 106 N/m (MTB_60), steel spring floating slab tracks (FSTs), trapezoidal sleeper tracks (TSTs), and resilient fasteners with a stiffness of 40 × 106 N/m (MTB_40) and 20 × 106 N/m (MTB_20) can reduce bridge-borne noise by 24.6 dB, 8.8 dB, 2.1 dB, and 4.2 dB, respectively. These vibration-mitigating tracks can decrease the radiated noise from the track slab by −0.7 dB, −0.6 dB, 2.5 dB, and 2.6 dB, but increase wheel–rail noise by 0.4 dB, 0.8 dB, 1.3 dB, and 2.4 dB, respectively. The noise emanating from the main girder and the track slab was dominant in the linear weighting of the total noise of the elevated section with MTBs. For the TST and FST, the radiated noise from the track slab contributed most to the total noise. Full article
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17 pages, 7004 KB  
Article
Solar Radiation Drives the Plant Species Distribution in Urban Built-Up Areas
by Heyi Wei, Bo Huang, Mingshu Wang and Xuejun Liu
Plants 2025, 14(4), 539; https://doi.org/10.3390/plants14040539 - 10 Feb 2025
Viewed by 1429
Abstract
Urban areas serve as critical habitats for numerous plant species. Existing studies suggest that, due to human-mediated introductions, urban environments often harbor a greater variety of plant species compared to suburban areas, potentially becoming focal points for biodiversity. Consequently, investigating the driving forces [...] Read more.
Urban areas serve as critical habitats for numerous plant species. Existing studies suggest that, due to human-mediated introductions, urban environments often harbor a greater variety of plant species compared to suburban areas, potentially becoming focal points for biodiversity. Consequently, investigating the driving forces and complex mechanisms by which urban environmental factors influence plant species distribution is essential for establishing the theoretical foundation for urban biodiversity conservation and future urban planning and management. Solar radiation, among these factors, is a critical determinant of plant growth, development, and reproduction. However, there is a notable lack of research on how this factor affects the distribution of urban plant species and influences species’ richness and composition within plant communities. We present for the first time an analysis of how solar radiation drives the spatial distribution of plant species within the built-up areas of Nanchang City, China. Based on three years of monitoring and survey data from experimental sites, this study employs three evaluation models—Species Richness Index (R), Simpson’s Diversity Index (D), and Shannon–Wiener Index (H)—to analyze and validate the survey results. Additionally, MATLAB and ArcGIS Pro software are utilized for the numerical simulation and visualization of spatial data. Our study shows that areas with low solar radiation exhibit higher plant species richness, while plots with high plant diversity are primarily concentrated in regions with strong solar radiation. Moreover, the Diversity Index D proves to be more sensitive than the Shannon–Wiener Index (H) in evaluating the spatial distribution of plant species, making it a more suitable metric for studying urban plant diversity in our study area. Among the 18 plant species analyzed, Mulberry and Dandelion are predominantly dispersed by birds and wind, showing no significant correlation with solar radiation. This finding indicates that the spatial distribution of urban plant species is influenced by multiple interacting factors beyond solar radiation, highlighting the critical need for long-term observation, monitoring, and analysis. This study also suggests that shaded urban areas may serve as hubs of high species richness, while regions with relatively strong solar radiation can sustain greater plant diversity. These findings underscore the practical significance of this research, offering essential insights to guide urban planning and management strategies. Additionally, this study offers valuable insights for the future predictions of plant species distribution and potential areas of high plant diversity in various urban settings by integrating computational models, building data, Digital Elevation Models (DEMs), and land cover data. Full article
(This article belongs to the Special Issue Plants for Biodiversity and Sustainable Cities)
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20 pages, 4049 KB  
Article
Anthropogenic Aerosol Dominates the Decadal Change in Evapotranspiration over Southeastern China in the Past Four Decades
by Zhiyong Kong, Jian Cao and Boyang Wang
Remote Sens. 2025, 17(3), 561; https://doi.org/10.3390/rs17030561 - 6 Feb 2025
Cited by 2 | Viewed by 882
Abstract
Evapotranspiration (ET) is vital for global water balance, energy cycle, and biological processes, representing a key component of Earth systems interactions. However, how human activities affect regional ET is still unknown. This study identified a decadal decrease in ET before 2000, followed by [...] Read more.
Evapotranspiration (ET) is vital for global water balance, energy cycle, and biological processes, representing a key component of Earth systems interactions. However, how human activities affect regional ET is still unknown. This study identified a decadal decrease in ET before 2000, followed by an increase over southeastern China in observations. Simulations from the coupled model intercomparison project phase 6 (CMIP6) models well reproduced the observed decadal ET change, with a lag of 10 years, which may be due to the spatial and temporal simplification of aerosol forcing data in CMIP6. Attribution analysis reveals that the change in anthropogenic aerosol emissions was the primary driver of the ET change, while the contribution of greenhouse gas was negligible. The Penman–Monteith framework identified that the net surface radiation contributed 77% of the ET trend change in the anthropogenic aerosol-only experiment. The increase and reduction in anthropogenic aerosol emissions reduce and increase the shortwave radiation reaching the Earth’s surface, respectively, resulting in the different trends of energy sources for ET. Our findings underscore the critical role of aerosols in shaping surface energy balance and influencing regional hydrological cycles. Full article
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21 pages, 6850 KB  
Article
Adsorption Behaviors of ctDNA and Biological Activities Based on Polyvinyl Alcohol/Polyethylene Glycol/Quaternized Chitosan Composite Hydrogel
by Lili Fu, Kun Liu, Jinyu Yang, Yuan Zhao, Zhijun Wang, Dongxu Tang, Yuesheng Li and Huangqin Chen
Molecules 2024, 29(23), 5770; https://doi.org/10.3390/molecules29235770 - 6 Dec 2024
Cited by 2 | Viewed by 1250
Abstract
In this study, a polyvinyl alcohol/polyethylene glycol/hydroxypropyltrimethyl ammonium chloride chitosan (PVA/PEG/HACC) ternary composite hydrogel was synthesized using electron-beam radiation. The materials were thoroughly characterized via Fourier transform infrared spectroscopy, X-ray diffraction, scanning electron microscopy, thermogravimetric analysis, Brunauer–Emmett–Teller analysis, gelation fraction tests, and swelling [...] Read more.
In this study, a polyvinyl alcohol/polyethylene glycol/hydroxypropyltrimethyl ammonium chloride chitosan (PVA/PEG/HACC) ternary composite hydrogel was synthesized using electron-beam radiation. The materials were thoroughly characterized via Fourier transform infrared spectroscopy, X-ray diffraction, scanning electron microscopy, thermogravimetric analysis, Brunauer–Emmett–Teller analysis, gelation fraction tests, and swelling rate tests. Systematic adsorption experiments revealed that the rate of adsorption of calf thymus DNA (ctDNA) by the PVA/PEG/HACC hydrogel reached 89%. The adsorption process followed the Langmuir isotherm and pseudo-second-order kinetic model. This process was mainly characterized by monolayer chemical adsorption, with intraparticle diffusion playing a crucial role. In addition, the process was spontaneous, with higher temperatures enhancing adsorption. The possible adsorption mechanisms included electrostatic interactions, hydrogen bonding, and van der Waals forces. The maximum ctDNA desorption rate was 81.67%. The adsorption rate remained at 71.39% after five adsorption–desorption cycles. The bioactivity of the PVA/PEG/HACC hydrogel was validated by antibacterial, cytotoxicity, and apoptosis tests. The results of this study demonstrated the crucial application potential of adsorbent materials in DNA adsorption and biomedical applications. Full article
(This article belongs to the Special Issue Physicochemical Research on Material Surfaces)
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24 pages, 7445 KB  
Article
Old Passengers as New Drivers: Chromosomal Passenger Proteins Engage in Translesion Synthesis
by Katharina Falke, Elisabeth Schröder, Stefanie Mosel, Cansu N. Yürük, Sophie Feldmann, Désirée Gül, Paul Stahl, Roland H. Stauber and Shirley K. Knauer
Cells 2024, 13(21), 1804; https://doi.org/10.3390/cells13211804 - 31 Oct 2024
Viewed by 1642
Abstract
Survivin is known for its dual biological role in apoptosis inhibition and mitotic progression. In addition to its being part of the chromosomal passenger complex (CPC), recent findings suggest additional roles for Survivin in the DNA damage response, further contributing to therapy resistance. [...] Read more.
Survivin is known for its dual biological role in apoptosis inhibition and mitotic progression. In addition to its being part of the chromosomal passenger complex (CPC), recent findings suggest additional roles for Survivin in the DNA damage response, further contributing to therapy resistance. In this study, we investigated the role of Survivin and the CPC proteins in the cellular response to irradiation with a focus on DNA replication processes. As is known, ionizing radiation leads to an increased expression of Survivin and its accumulation in nuclear foci, which we now know to be specifically localized to centromeric heterochromatin. The depletion of Survivin and Aurora B increases the DNA damage marker γH2AX, indicative of an impaired repair capacity. The presence of Survivin and the CPC in nuclear foci that we already identified during the S phase co-localize with the proliferating cell nuclear antigen (PCNA), further implying a potential role during replication. Indeed, Survivin knockdown reduced replication fork speed as assessed via DNA fiber assays. Mechanistically, we identified a PIP-box motif in INCENP mediating the interaction with PCNA to assist in managing damage-induced replication stress. Survivin depletion forces cells to undergo unphysiological genome replication via mitotic DNA synthesis (MiDAS), resulting in chromosome breaks. Finally, we revealed that Aurora B kinase liberates Pol η by phosphorylating polymerase delta-interacting protein 2 (POLDIP2) to resume the replication of damaged sites via translesion synthesis. In this study, we assigned a direct function to the CPC in the transition from stalled replication forks to translesion synthesis, further emphasizing the ubiquitous overexpression of Survivin particularly in tumors. This study, for the first time, assigns a direct function to the chromosomal passenger complex, CPC, including Survivin, Aurora B kinase, Borealin, and INCENP, in the transition from stalled replication forks (involving PCNA binding) to translesion synthesis (liberating Pol η by phosphorylating POLDIP2), and thus in maintaining genomic integrity. Full article
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20 pages, 4707 KB  
Review
Optical Forces on Chiral Particles: Science and Applications
by Weicheng Yi, Haiyang Huang, Chengxing Lai, Tao He, Zhanshan Wang, Xinhua Dai, Yuzhi Shi and Xinbin Cheng
Micromachines 2024, 15(10), 1267; https://doi.org/10.3390/mi15101267 - 17 Oct 2024
Cited by 4 | Viewed by 4124
Abstract
Chiral particles have attracted considerable attention due to their distinctive interactions with light, which enable a variety of cutting-edge applications. This review presents a comprehensive analysis of the optical forces acting on chiral particles, categorizing them into gradient force, radiation pressure, optical lateral [...] Read more.
Chiral particles have attracted considerable attention due to their distinctive interactions with light, which enable a variety of cutting-edge applications. This review presents a comprehensive analysis of the optical forces acting on chiral particles, categorizing them into gradient force, radiation pressure, optical lateral force, pulling force, and optical force on coupled chiral particles. We thoroughly overview the fundamental physical mechanisms underlying these forces, supported by theoretical models and experimental evidence. Additionally, we discuss the practical implications of these optical forces, highlighting their potential applications in optical manipulation, particle sorting, chiral sensing, and detection. This review aims to offer a thorough understanding of the intricate interplay between chiral particles and optical forces, laying the groundwork for future advancements in nanotechnology and photonics. Full article
(This article belongs to the Special Issue The 15th Anniversary of Micromachines)
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16 pages, 4593 KB  
Article
Computational Multiscale Study of the Interaction Between the PDMS Polymer and Sunscreen-Related Pollutant Molecules
by Stevan Armaković, Đorđe Vujić and Boris Brkić
Molecules 2024, 29(20), 4908; https://doi.org/10.3390/molecules29204908 - 17 Oct 2024
Viewed by 1475
Abstract
Sunscreen molecules play a critical role in protecting skin from ultraviolet radiation, yet their efficient detection and separation pose challenges in environmental and analytical contexts. In this work, we employ a multilevel modeling approach to investigate the molecular interactions between representative sunscreen molecules [...] Read more.
Sunscreen molecules play a critical role in protecting skin from ultraviolet radiation, yet their efficient detection and separation pose challenges in environmental and analytical contexts. In this work, we employ a multilevel modeling approach to investigate the molecular interactions between representative sunscreen molecules and the polydimethylsiloxane (PDMS) polymer, a material widely recognized for its sorbent properties. Our goal is to explore how these interactions can be fine-tuned to facilitate the effective separation of sunscreen molecules in portable membrane inlet mass spectrometry (MIMS) systems, potentially leading to the development of new membrane materials. Using a combination of advanced computational techniques—force field molecular dynamics simulations, semiempirical GFN2-xTB, and density functional theory calculations—we assess the interaction strength and noncovalent interactions of sunscreen molecules, namely oxybenzone, naphthalene, benzo[a]anthracene, avobenzone, and 1,3,5-trichlorobenzene, with PDMS. Additionally, the effect of temperature on the interaction dynamics is evaluated, with the aim of extending the sorbent capacities of PDMS beyond light polar molecules to larger, polar sunscreen compounds. This study provides critical insights into the molecular-level interactions that may guide the design of novel membrane materials for efficient molecular separation. Full article
(This article belongs to the Section Molecular Structure)
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22 pages, 2402 KB  
Article
Chronic Low-Dose-Rate Radiation-Induced Persistent DNA Damage and miRNA/mRNA Expression Changes in Mouse Hippocampus and Blood
by Hong Wang, Salihah Lau, Amanda Tan and Feng Ru Tang
Cells 2024, 13(20), 1705; https://doi.org/10.3390/cells13201705 - 15 Oct 2024
Cited by 1 | Viewed by 1825
Abstract
Our previous study demonstrated that the acute high-dose-rate (3.3 Gy/min) γ-ray irradiation (γ-irradiation) of postnatal day-3 (P3) mice with 5 Gy induced depression and drastic neuropathological changes in the dentate gyrus of the hippocampus of adult mice. The present study investigated the effects [...] Read more.
Our previous study demonstrated that the acute high-dose-rate (3.3 Gy/min) γ-ray irradiation (γ-irradiation) of postnatal day-3 (P3) mice with 5 Gy induced depression and drastic neuropathological changes in the dentate gyrus of the hippocampus of adult mice. The present study investigated the effects of chronic low-dose-rate (1.2 mGy/h) γ-irradiation from P3 to P180 with a cumulative dose of 5 Gy on animal behaviour, hippocampal cellular change, and miRNA and mRNA expression in the hippocampus and blood in female mice. The radiation exposure did not significantly affect the animal’s body weight, and neuropsychiatric changes such as anxiety and depression were examined by neurobehavioural tests, including open field, light-dark box, elevated plus maze, tail suspension, and forced swim tests. Immunohistochemical staining did not detect any obvious loss of mature and immature neurons (NeuN and DCX) or any inflammatory glial response (IBA1, GFAP, and PDGFRα). Nevertheless, γH2AX foci in the stratum granulosum of the dentate gyrus were significantly increased, suggesting the chronic low-dose-rate irradiation induced persistent DNA damage foci in mice. miRNA sequencing and qRT-PCR indicated an increased expression of miR-448-3p and miR-361-5p but decreased expression of miR-193a-3p in the mouse hippocampus. Meanwhile, mRNA sequencing and qRT-PCR showed the changed expression of some genes, including Fli1, Hs3st5, and Eif4ebp2. Database searching by miRDB and TargetScan predicted that Fli1 and Hs3st5 are the targets of miR-448-3p, and Eif4ebp2 is the target of miR-361-5p. miRNA/mRNA sequencing and qRT-PCR results in blood showed the increased expression of miR-6967-3p and the decreased expression of its target S1pr5. The interactions of these miRNAs and mRNAs may be related to the chronic low-dose-rate radiation-induced persistent DNA damage. Full article
(This article belongs to the Section Cells of the Nervous System)
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