Heartbeats Do Not Make Good Pseudo-Random Number Generators: An Analysis of the Randomness of Inter-Pulse Intervals
Abstract
:1. Introduction
Overview of Our Results
- We have downloaded 19 public databases with information about heart signals from different people. All datasets are taken from the Physionet repository (https://physionet.org/physiobank/database/#ecg) [31], which contains heart signals from both healthy volunteers and people with cardiac conditions. We then extracted the last four bits of the IPI of each person per database, thus creating a bit stream whose quality can be tested. In doing so, we attempt to address the gap detected in [12].
- We analyze all files independently to check if the ECG can be considered to be a good random number generator. To do so, two random number suites (ENT, general purpose, and NIST STS, security) have been run over all previously generated files. To the best of our knowledge, this is the first work that discusses how the ECG signal should be used in cryptographic protocols as a source of random numbers. Our scripts are made public (https://github.com/aylara/Random_ECG) to facilitate the replication of our results by other researchers.
- Contrary to prior proposals, we demonstrate that the ECG signal contains some degree of randomness, but its use in cryptographic applications is questionable. Some databases obtained reasonable results on either ENT or NIST STS. However, none of the tested databases obtained good results on both at the same time except the mitdb database.
2. Background
2.1. Biometric Authentication
2.2. IPI-Based Security Protocols
2.3. Randomness Tests
3. The Randomness of IPI Sequences
3.1. Dataset
3.2. IPI Extraction
- Get the sampling frequency for each signal, which is available in an associated description record.
- Run Pan–Tomkins’s QRS detection algorithm [74] over the ECG signal to extract the R-peaks.
- Get the timestamp of each R-peak and calculate the difference between each pair of consecutive R-peaks to obtain the sequence of raw IPI values.
- Apply a dynamic quantization algorithm to each IPI to decrease the measurement errors. This process consists of generating discrete values from an ECG (continuous signal).
- Apply a Grey code to the resulting quantized IPI values to increase the error margin of the physiological parameters.
- Extract the four LSB from each coded IPI value.
3.3. Measuring Randomness
3.3.1. ENT
3.3.2. NIST STS
3.4. Discussion
- When the median number of IPIs is higher than 1800, then the databases achieve extremely poor results (two passed tests out of 15 in the worst case) in the NIST STS. Examples of these databases are vfdb, szdb, slpdb, mghdb, edb, apnea-ecg and shareedb.
- When the median number of IPIs is between 1800 and 415, then the databases are on the borderline of passing (at least) half of the NIST STS. Examples of these databases are svdb, cudb, stdb, qtdb, mitdb and nstdb. There is also one exception to this rule: aami-ec13, which has a median of 48.5 IPIs, and it achieves a 33.3% (five passed tests out of 15), which is similar to the results of svdb.
- When the median number of IPIs is between 415 and 37, the databases achieve extremely good results (14 passed tests out of 15 in the best case) in the NIST STS. Examples of these databases are cdb, twadb, pbdb, iafdb, cebsdb. As before, there is an exception to this rule: aami-ec13, which has a median of 48.5 IPIs, and it only passes five out of 15 tests.
4. Conclusions
Acknowledgments
Author Contributions
Conflicts of Interest
Appendix A. Random Tests
Appendix A.1. ENT
Appendix A.2. NIST STS
References
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Work | Dataset | Randomness Test |
---|---|---|
[25] | 50 subjects from the MIMICII Waveform | Shannon’s Entropy |
[51] | 99 subjects from a private dataset | NIST STS (5/15) |
[52] | 50 subjects from a private dataset | NIST STS (15/15) |
[53] | Not specified | NIST STS (6/15) |
[6] | 47 subjects from mitdb; 290 from ptdb; 250 from mghdb | NIST STS (8/15) |
[28] | mitdb (no info is given) | Shannon’s entropy |
[30] | mitdb (no info is given) | Shannon’s entropy |
[8] | mitdb (no info is given) | ENT |
[29] | mitdb (no info is given) | Rényi’s entropy |
[47] | PhysioNet | NIST STS (9/15) |
[26] | 84 subjects from a private dataset and European ST-T | NIST STS (5/15) |
[27] | 18 subjects from MIT-BIHand 79 from the European ST-T | NIST STS (10/15) |
Dataset | #Records | Frequency (Hz) | Median (IPIs) | Pathology |
---|---|---|---|---|
cebsdb [31,55,56] | 54 | 5000 | 175 | Healthy volunteers |
ptbdb [57] | 545 | 1000 | 68 | Myocardial problems and healthy controls |
twadb [58] | 5 | 500 | 87 | Myocardial problems |
iafdb [59] | 5 | 1000 | 37 | Atrial fibrillation or flutter |
cdb [60] | 53 | 250 | 12 | Holter recordings |
nstdb [61] | 14 | 360 | 1246 | Physically-active volunteers |
mitdb [62] | 46 | 360 | 1113 | Arrhythmia |
qtdb [63] | 104 | 250 | 520.5 | Holter recordings |
stdb [64] | 28 | 360 | 1243 | Stress tests |
cudb [65] | 9 | 250 | 415 | Ventricular problems |
aami-ec13 [66] | 10 | 720 | 48.5 | Tachycardia |
svdb [67] | 47 | 128 | 1192 | Partial epilepsy |
vfdb [68] | 17 | 250 | 1800 | Tachycardia |
szdb [69] | 7 | 200 | 4439 | Partial epilepsy |
slpdb [70] | 17 | 250 | 11,517 | Sleep apnea syndrome |
edb [59] | 90 | 250 | 4405 | Myocardial and hypertension |
mghdb [71] | 202 | 360 | 2426 | Unstable patients in critical care units |
apnea-ecg [72] | 77 | 100 | 15,786 | Tachycardia |
shareedb [73] | 23 | 128 | 46,910 | Hypertension |
Test | Optimal Value | Threshold | Counter |
---|---|---|---|
Entropy | 1.0 | >0.85 | 0.99 |
Optimum compression | <0% | <5% | 0% |
Chi square | 95% | 95% | 1% |
Arithmetic mean | 0.5 | 0.4 0.6 | 0.46 |
Monte Carlo value for | error = 0% | error < 5% | 12.38% |
Serial correlation coefficient | 0 | or | 0.012 |
Dataset | Entropy | Optimum Compression | Chi Square | Arithmetic Mean | Monte Carlo Value for | Serial Correlation |
---|---|---|---|---|---|---|
cebsdb | 100% | 100% | 0% | 50% | 10% | 60% |
ptbdb | 99.82% | 100% | 0% | 97.98% | 22.20% | 99.63% |
twadb | 100% | 100% | 0% | 80% | 0% | 100% |
iafdb | 100% | 100% | 0% | 100% | 40% | 100% |
cdb | 100% | 100% | 0% | 81.13% | 1.89% | 96.23% |
nstdb | 100% | 100% | 0% | 92.86% | 35.71% | 100% |
mitdb | 100% | 100% | 0% | 97.83% | 47.83% | 97.83% |
qtdb | 99.04% | 100% | 0% | 96.15% | 38.46% | 100% |
stdb | 100% | 100% | 0% | 100% | 35.71% | 100% |
cudb | 100% | 100% | 0% | 44.44% | 11.11% | 100% |
aami-ec13 | 80% | 100% | 0% | 50% | 10% | 60% |
svdb | 100% | 100% | 0% | 97.87% | 42.55% | 97.87% |
vfdb | 83% | 100% | 0% | 17% | 6% | 94% |
szdb | 85.71% | 100% | 0% | 85.71% | 71.43% | 85.71% |
slpdb | 100% | 100% | 0% | 100% | 74.47% | 100% |
edb | 98.89% | 100% | 0% | 98.89% | 60% | 100% |
mghdb | 72.28% | 100% | 0% | 59.41% | 22.28% | 86.14% |
apnea-ecg | 75.32% | 100% | 0% | 62.34% | 29.87% | 81.82% |
shareedb | 95.65% | 100% | 0% | 95.65% | 55.52% | 100% |
Test Name | n | m or M |
---|---|---|
Frequency (Monobit) | - | |
Frequency Test within a Block | - | |
Run | - | |
Longest Run of Ones in a Block | ||
Binary Matrix Rank | - | |
Discrete Fourier Transform (Spectral) | - | |
Non-Overlapping Template Matching | ||
Overlapping Template Matching | ||
Maurer’s “Universal Statistical” Test | ||
Linear Complexity | ||
Serial | ||
Approximate Entropy | ||
Cumulative Sums | ||
Random Excursions | ||
Random Excursions Variant |
Dataset | Monobit Frequency | Block Frequency | Runs | Longest Run Ones | Binary Matrix Rank | Spectral | Non Overlapping Template Matching | Overlapping Template Matching | Universal Statistic | Linear Complexity | Serial | Approximate Entropy | Cumulative Sums | Random Excursions | Random Excursions Variant |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
cebsdb | 94% | 81% | 85% | 87% | 98% | 100% | 96% | 72% | 100% | 20% | 85% | 96% | 96% | 98% | 100% |
ptbdb | 89% | 89% | 89% | 89% | 85% | 92% | 98% | 84% | 1% | 0% | 100% | 85% | 98% | 99% | 65% |
twadb | 80% | 60% | 80% | 100% | 80% | 80% | 100% | 80% | 20% | 0% | 100% | 60% | 100% | 80% | 80% |
iafdb | 100% | 100% | 100% | 80% | 100% | 100% | 100% | 100% | 20% | 0% | 100% | 100% | 80% | 100% | 40% |
cdb | 94% | 25% | 92% | 94% | 100% | 94% | 96% | 81% | 0% | 0% | 100% | 77% | 100% | 100% | 0% |
nstdb | 14% | 21% | 7% | 64% | 21% | 50% | 71% | 57% | 86% | 57% | 7% | 93% | 93% | 71% | 100% |
mitdb | 46% | 33% | 33% | 50% | 35% | 59% | 91% | 52% | 89% | 39% | 9% | 87% | 96% | 85% | 100% |
qtdb | 47% | 41% | 44% | 54% | 25% | 53% | 92% | 56% | 89% | 0% | 0% | 77% | 98% | 81% | 95% |
stdb | 50% | 7% | 29% | 54% | 21% | 21% | 64% | 32% | 64% | 21% | 4% | 71% | 100% | 32% | 100% |
cudb | 0% | 11% | 0% | 56% | 11% | 22% | 11% | 67% | 67% | 0% | 11% | 56% | 100% | 22% | 78% |
aami-ec13 | 10% | 20% | 30% | 40% | 20% | 10% | 90% | 90% | 0% | 0% | 100% | 60% | 100% | 0% | 40% |
svdb | 23% | 11% | 19% | 28% | 6% | 9% | 77% | 43% | 77% | 21% | 0% | 77% | 100% | 28% | 94% |
vfdb | 29% | 12% | 12% | 41% | 18% | 12% | 29% | 29% | 88% | 18% | 0% | 71% | 100% | 24% | 100% |
szdb | 14% | 0% | 0% | 29% | 0% | 0% | 43% | 29% | 71% | 0% | 0% | 86% | 100% | 0% | 86% |
slpdb | 24% | 0% | 6% | 35% | 6% | 12% | 76% | 12% | 24% | 0% | 0% | 76% | 94% | 6% | 94% |
edb | 23% | 1% | 14% | 29% | 3% | 7% | 62% | 21% | 43% | 9% | 0% | 86% | 100% | 2% | 94% |
mghdb | 22% | 14% | 14% | 33% | 11% | 12% | 35% | 34% | 34% | 7% | 19% | 57% | 99% | 15% | 60% |
apnea-ecg | 5% | 4% | 4% | 17% | 1% | 0% | 27% | 26% | 23% | 0% | 9% | 68% | 96% | 1% | 75% |
shareedb | 9% | 0% | 0% | 4% | 0% | 0% | 17% | 0% | 0% | 0% | 0% | 48% | 100% | 0% | 96% |
Average | 36.8% | 21.0% | 26.3% | 52.6% | 26.3% | 42.1% | 68.4% | 52.6% | 47.3% | 5.2% | 31.5% | 94.7% | 100% | 42.1% | 84.2% |
Dataset | ENT | NIST STS | Avg. No. Samples | Median (IPI) | Pathology |
---|---|---|---|---|---|
cebsdb | 66.6% | 93.3% | 4,968,780 | 175 | Healthy volunteers |
ptbdb | 66.6% | 86.6% | 108,818 | 68 | Myocardial problems and Healthy controls |
twadb | 66.6% | 86.6% | 59,770 | 87 | Myocardial problems |
iafdb | 66.6% | 80.0% | 19,707,034 | 37 | Atrial fibrillation or flutter |
cdb | 66.6% | 73.3% | 5,120 | 12 | Holter recordings |
nstdb | 66.6% | 66.6% | 650,000 | 1246 | Physically active volunteers |
mitdb | 66.6% | 60.0% | 650,000 | 1113 | Arrhythmia |
qtdb | 66.6% | 60.0% | 224,999 | 520.5 | Holter recordings |
stdb | 66.6% | 46.6% | 624,166 | 1243 | Stress tests |
cudb | 50.0% | 40.0% | 127,232 | 415 | Ventricular problems |
aami-ec13 | 66.6% | 33.3% | 55,522 | 48.5 | Tachycardia |
svdb | 66.6% | 33.3% | 230,400 | 1192 | Partial epilepsy |
vfdb | 50.0% | 26.6% | 525,000 | 1800 | Tachycardia |
szdb | 83.3% | 26.6% | 17,245,701 | 4439 | Partial epilepsy |
slpdb | 83.3% | 26.6% | 4,188,530 | 11,517 | Sleep apnea syndrome |
edb | 83.3% | 26.6% | 1,800,000 | 4405 | Myocardial and hypertension |
mghdb | 66.6% | 20.0% | 1,479,358 | 2426 | Unstable patients in critical care units |
apnea-ecg | 66.6% | 20.0% | 11,930 | 15,786 | Tachycardia |
shareedb | 83.3% | 13.3% | 10,553,116 | 46,910 | Hypertension |
© 2018 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
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Ortiz-Martin, L.; Picazo-Sanchez, P.; Peris-Lopez, P.; Tapiador, J. Heartbeats Do Not Make Good Pseudo-Random Number Generators: An Analysis of the Randomness of Inter-Pulse Intervals. Entropy 2018, 20, 94. https://doi.org/10.3390/e20020094
Ortiz-Martin L, Picazo-Sanchez P, Peris-Lopez P, Tapiador J. Heartbeats Do Not Make Good Pseudo-Random Number Generators: An Analysis of the Randomness of Inter-Pulse Intervals. Entropy. 2018; 20(2):94. https://doi.org/10.3390/e20020094
Chicago/Turabian StyleOrtiz-Martin, Lara, Pablo Picazo-Sanchez, Pedro Peris-Lopez, and Juan Tapiador. 2018. "Heartbeats Do Not Make Good Pseudo-Random Number Generators: An Analysis of the Randomness of Inter-Pulse Intervals" Entropy 20, no. 2: 94. https://doi.org/10.3390/e20020094
APA StyleOrtiz-Martin, L., Picazo-Sanchez, P., Peris-Lopez, P., & Tapiador, J. (2018). Heartbeats Do Not Make Good Pseudo-Random Number Generators: An Analysis of the Randomness of Inter-Pulse Intervals. Entropy, 20(2), 94. https://doi.org/10.3390/e20020094