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Article

X-ray Structures of Precursors of Styrylpyridine-Derivatives Used to Obtain 4-((E)-2-(Pyridin-2-yl)vinyl)benzamido-TEMPO: Synthesis and Characterization

by
Guillermo Soriano-Moro
*,
María Judith Percino
,
Ana Laura Sánchez
,
Víctor Manuel Chapela
,
Margarita Cerón
and
María Eugenia Castro
Laboratorio de Polímeros, Centro de Química, Instituto de Ciencias, Benemérita Universidad Autónoma de Puebla (BUAP), Complejo de Ciencias, ICUAP, Edif. 103H, 22 Sur y San Claudio, C.P. 72570 Puebla, Puebla, Mexico
*
Author to whom correspondence should be addressed.
Molecules 2015, 20(4), 5793-5811; https://doi.org/10.3390/molecules20045793
Submission received: 25 February 2015 / Revised: 25 March 2015 / Accepted: 25 March 2015 / Published: 2 April 2015
(This article belongs to the Section Organic Chemistry)
Browse Figures
Versions Notes

Abstract

:
The synthesis and characterization of the precursor isomers trans-4-(2-(pyridin-2-yl)vinylbenzaldehyde (I), trans-4-(2-(pyridin-4-yl)vinylbenzaldehyde (II), trans-4-(2-(pyridin-2-yl)vinylbenzoic acid (III) and (E)-4-(2-(pydridin-4-yl)vinylbenzoic acid (IV) are reported. These compounds were prepared in order to obtain trans-4-((E)-2-(pyridin-2-yl)vinyl)benzamide-TEMPO (V). Compounds I and II were obtained by using a Knoevenagel reaction in the absence of a condensing agent and solvent. Oxidation of the aldehyde group using the Jones reagent afforded the corresponding acid forms III and IV. A condensation reaction with 4-amino-TEMPO using oxalyl chloride/DMF/CH2Cl2 provided the 4-((E)-2-(pyridin-2-yl)vinyl)benzamide-TEMPO. Single crystals of compounds I, II and III were obtained and characterized by X-ray diffraction. Compound I belongs to space group P21/c, a = 12.6674(19) Å, b = 7.2173(11) Å, c = 11.5877(14) Å, β = 97.203(13)° and the asymmetric unit was Z = 4, whereas compound II was in the space group P21, with a = 3.85728(9) Å, b = 10.62375(19) Å, c = 12.8625(2) Å, β = 91.722 (2)° and the asymmetric unit was Z = 2. Compound III crystallized as single colorless needle crystals, belonging to the monoclinic system with space group P21, with Z = 2, with a = 3.89359(7) Å, b = 17.7014(3) Å, c = 8.04530(12) Å, β = 94.4030 (16)°. All compounds were completely characterized by IR, 1H-NMR, EI-MS and UV-Vis.

1. Introduction

Since the first stable radical compound was synthesized in 1961 [1] a series of stable radical structures, such as nitroxyl, phenoxyl, and hydrazyl have been successfully synthesized. These compounds are stable radical compounds that have an electron spin in spite of being organic materials [2]. Nitrogen heterocyclic nitroxides and their diamagnetic derivatives (sterically hindered amine and hydroxylamine) are known as low-molecular-weight multifunctional antioxidants that can participate in one-electron redox processes. Nitroxides have attenuated oxidative damage in various experimental models, including cultured cells [3], brain injury [4], lipid peroxidation in liver microsomes [5], post-ischemic reperfusion injury in isolated organs [6], and exhibit ionizing irradiation damage in rats and mice [7]. Recent investigations have focused on the synthesis of several molecules modified with nitroxides [8,9,10,11]. For example, 2,2,6,6-tetramethylpiperidine 1-oxyl (TEMPO) and its derivatives have been successfully used in modification processes to graft polar species such as –OH or ester groups onto polymers [12]. Also, molecules bearing nitroxides covalently linked to fluorophore have been used as fluorescence spin-label [13,14,15,16] or nuclear-localizing redox probes [17].
In recent years, dyes have been widely used as photoinitiators of free radical polymerization and as fluorescence probes for spectroscopy studies in monitoring specific chemical properties of the medium in which they are incorporated. Therefore, these compounds permit measurements of medium polarity or degree of cure by measuring the changes in the emission intensity or value of the shift in the emission maximum. Also, these dyes have found applications in the development of organic and molecular-based magnetic materials [18]. Currently, there is great interest in applying molecular-based magnetic materials to the development of spin systems with various properties, particularly with respect to photo- and heat-responsive spin systems. The development of novel spin systems has led to the discovery of conjugated organic spin systems which respond to outside stimuli, such as light, heat, pressure and electrons, etc. Attempts have been made to develop spin systems with multiple properties [19].
Distyrylbenzenes and related fluorophores have found widespread applications in optical display devices [20,21,22,23,24,25], as nonlinear optical materials [26,27,28], two-photon absorbers [29,30,31], and for sensing purposes [32,33]. The combination of electron-pair donating and electron-pair accepting (EPA) substituents on a π-system can lead to an efficient internal charge transfer, resulting in bathochromic shifts of the electronic spectra, dual fluorescence [34,35,36,37], and efficient two-photon absorption. These properties depend on the length and nature of the π-system and the strength and position of donor and acceptor groups [38]. In addition, the presence of electron withdrawing groups in the π-system, such as replacing benzene rings with electron deficient heterocycles like pyridine [39,40,41,42], has been a successful route to increase the electron affinity. The introduction of a nitrogen atom into the ring noticeably affects the photophysical and photochemical behavior of stilbene. Our work has focused on model compounds with trans conformation distyrylbenzene (DSB) linked with pyridine moieties (styrylpyridines) which had been obtained without the need for catalyst and solvent [43,44,45,46,47,48,49,50,51]. We have also conducted studies to understand their effects on the optics and electronic properties from a theoretical perspective [52]. X-ray studies of model compounds showed that although the molecules were planar, they did not exhibit a total delocalization of their electrons throughout the whole molecule, i.e., they did not exhibit complete aromaticity. X-ray results reported that the conformation of the double bond was trans. Therefore, using conjugated compounds such as styrylpyridine attached to TEMPO could be widely used to prolong the lifetime of coatings, bulk polymers, thin films, as well applications to label polymers or as a measure of molecular mass by IR and UV spectroscopy.
In this paper, we report the preparation of precursors to obtain low molecular weight styrylpyridine derivatives bearing TEMPO, and their structures obtained by X-ray crystallography analysis, together with their complete characterization. Our goal is to use these compounds as labels of polymers to measure the polymer molecular mass. The precursors are interesting because of the presence of groups such as –COH and –COOH, that allow different absorption properties.

2. Results and Discussion

Several approaches for the preparation for methylpyridines with aromatic aldehydes have recently been carried out. Solvent-free methods at temperatures of 120–140 °C were successfully used to synthesize different styrylpyridines and α,β-acrylonitriles as well as intermediates formed in the condensation reaction of methylpyridines and aromatic aldehyde compounds [53,54]. The procedure to obtain the compounds I and II allowed us to control the reaction of just one aldehyde group from terephthalaldehyde during the condensation reaction with the methyl group that formed the double bond. The behavior of this reaction is attributed to the control of the reaction temperature rather than to the molar ratios of reactants, because when the reaction was carried out at higher temperature, compounds such as 1,4-bis(2,2-diphenylethenyl)benzene or 1,4-bis(4,4-diphenylethenyl)benzene were formed instead of I and II. Our results also showed that the position of the methyl group on the pyridine ring affected its reactivity. Compounds III and IV were prepared with Jones oxidation conditions allowing their preparation in a convenient and safe procedure. The modest yield was attributed to the effect of the nitrogen atom in the ortho position, affording lower solubility to compound IV. In addition, we obtained III as the pure acid by recrystallization with CH3OH:DMF (80:20).

2.1. Characterization

Characterization from IR, 1H-NMR, and EI spectra of I–V showed characteristic features indicating that the precursors with the isomers structures of trans-(E)-4-(2-(pyridin-2-yl)vinyl- and trans-(E)-4-(2-(pyridin-4-yl)vinyl- contained the functional group –COH, –COOH. The ORTEP structures of I–III including the atomic numbering scheme are shown in Figure 1. Selected crystal data, structure solution and refinement for isomers I, II and III are listed in Table 1. Table 2 gives selected bond lengths with estimated standard deviations also for all three compounds.
Molecules 20 05793 g001 550
Figure 1. Molecular structures of I, II and III. The displacement ellipsoids are drawn at the 50% probability level and H atoms are shown as small spheres of arbitrary radii.
Figure 1. Molecular structures of I, II and III. The displacement ellipsoids are drawn at the 50% probability level and H atoms are shown as small spheres of arbitrary radii.
Molecules 20 05793 g001
Table
Table 1. Crystallography Data for I, II and III compounds.
Table 1. Crystallography Data for I, II and III compounds.
IIIIII
Empirical formulaC14H11NOC14H11NOC14H11NO2
Crystal systemmonoclinicmonoclinicmonoclinic
Color, Habitcolorless irregular blockyellow, blockNeedle, colorless
Formula weight209.24209.24225.24
Space groupP 21/cP21P 21
T (K)110(2)100(2)110(2)
A (Å)12.6674(19)3.85728(9)3.89359(7)
b (Å)7.2173(11)10.62375(19)17.7014(3)
c (Å)11.5877(14)12.8625(2)8.04530(12)
α (°)90.0090.00 90.00
β (°)97.203(13)91.722(2)94.4030(16)
γ (°)90.0090.0090.00
V (Å3)1051.0(3)526.852(18)552.862(16)
Z422
Dc(g cm−3)1.3221.3191.353
F (000)592220440
μ (mm−1)0.6630.6620.740
λ (Å)1.54181.54181.5418
Crystal size (mm3)0.25 × 0.10 × 0.030.39 × 0.28 × 0.220.24 × 0.09 × 0.06
2θmax (°)143.8143.8143.8
No of reflections669761367517
N° of unique reflections, I > 2 σ(I)193320372165
R1 (I > 2 σ(I)), R1 (all)6.08, 8.293.03, 3.052.75, 2.79
wR2 (I > 2 σ(I)), wR2 (all)17.16, 18.398.63, 8.657.43, 7.48
goodness-of-fit1.1691.0851.054
Largest diff peak and hole (e Å−3)0.22 and −0.270.21 and −0.210.21 and −0.16
Table
Table 2. Bond lengths (Å) for compounds I, II and III.
Table 2. Bond lengths (Å) for compounds I, II and III.
IIIIII
C(1)-O(1)1.212(4)1.212(2)1.219(2)
C(1)-C(2)1.470(4)1.477(2)1.493(2)
C(2)-C(3)1.391(4)1.392(2)1.392(2)
C(2)-C(7)1.398(4)1.394(2)1.398(3)
C(4)-C(5)1.400(4)1.402(2)1.399(3)
C(5)-C(6)1.406(4)1.403(2)1.401(2)
C(5)-C(8)1.462(4)1.470(2)1.466(2)
C(6)-C(7)1.376(4)1.386(2)1.383(3)
C(8)-C(9)1.331(4)1.331(2)1.335(3)
C(9)-C(10)1.469(4)1.469(2)1.470(2)
C(10)-C(11)1.399(4)1.393(2)1.397(3)
C(11)-C(12) 1.382(5)1.391(2)1.381(3)
C(13)-C(14)1.395(5)1.388(2)1.386(3)
C(12)-C(13)1.370(5) 1.386(3)
C(10)-N(1)1.351(4) 1.352(2)
C(14)-N(1)1.330(4) 1.335(2)
C(1)-O(2) 1.317(2)
C(10)-C(14) 1.397(2)
C(12)-N(1) 1.338(2)
C(13)-N(1) 1.343(2)
The molecular structures for compounds I and II were ordered. The 4-phenylcarbaldehyde moiety is located trans to the pyridine ring in the molecule in relation to the double bond. The bond lengths for compound I were C(10)-C(9) [1.469(4) Å], C(9)-C(8) [1.331(4) Å], C(8)-C(5) [1.462(4) Å], (Table 2) while the corresponding bonds lengths for the compound II were 1.469(2) Å 1.331(2) Å, 1.470(2) Å. These values indicated that the compounds contained a double bond in conjugation with an aromatic ring, (Csp2=Csp2; trans of 1.32 Å conjugation; Csp2-Car (C=C-Car conjugated at 1.47 Å) as well as a delocalization of the π electrons Car Molecules 20 05793 i001Car in the phenyl ring of 1.387 Å, in the two six-membered rings through the C(8)-C(9) bond. Similar distances were observed for the 2-styrylpyridine derivatives and were slightly different than the reported values [55]. Bond lengths C(1)-O(1) for I and II were of the equal value, 1.212(4) Å for aldehyde (Csp2=O in Car-C=O of 1.221 Å) [55]. Also, the results showed that structures I and II were almost planar molecules, with the pyridyl ring and 4-phenylcarbaldehyde group being coplanar with the double bond (Table 3 and Table 4). For I, the torsion angles between the atoms C(8)-C(9)-C(10)-N(1) were 0.4(5)°, C(4)-C(5)-C(8)-C(9) of 1.0(5)° and between O(1)-C(1)-C(2)-C(3) were −172.1(3)°. Compound II showed torsion angles between C(8)-C(9)-C(10)-C(14) of 1.2(3)°, C(4)-C(5)-C(8)-C(9) of −4.6(2)°, and between O(1)-C(1)-C(2)-C(3) of 179.57(16)°. The partial π character of the C(9)-C(8), C(10)-C(9) and C(8)-C(5) bonds (Table 2) helps to explain the aromatic planar nature of the molecules. The difference between both compounds is in the molecular crystal packing (Figure 2). For I, the molecular packing does not present regular hydrogen bonding between molecules. However, the packing motif showed a non-classical herringbone packing with a weak π-π overlap between neighboring molecules. For compound I, the distances between the co-facial π-π overlap interaction C/π…C/π was 3.381 Å, between CH(py)…C(Ar) (2.843 Å) and C(Ar)…CH(py) (2.865 Å). Within each stack, however, the molecules are translated (slipped) along the short axis, thus minimizing the π-overlapping between them. A similar interaction arises for compound II between CH(COH)…N(Py) of 2.683 Å, and C(CO)…CH(Py) 2.615 Å, but II did not present short contact interactions such as CH/π∙∙∙∙–CH/π.
Table
Table 3. Bond angles (°) for compounds I, II and III.
Table 3. Bond angles (°) for compounds I, II and III.
IIIIII
O(1)-C(1)-C(2)124.5(3)124.68(16)122.50(17)
C(3)-C(2)-C(1)119.0(3)118.97(15)121.85(17)
C(7)-C(2)-C(1)122.1(3)121.11(15)119.15(16)
C(4)-C(5)-C(8) 122.8(3)122.25(14)119.27(16)
C(6)-C(5)-C(8)119.4(3)118.76(13)122.46(16)
C(9)-C(8)-C(5)126.4(3)126.24(14)125.65(17)
C(8)-C(9)-C(10)124.7(3)125.54(14)124.62(17)
C(11)-C(10)-C(9)119.9(3)119.68(14)123.49(16)
N(1)-C(14)-C(13)124.0(3)124.18(15)122.86(19)
N(1)-C(10)-C(11)122.0(3) 120.93(17)
N(1)-C(10)-C(9)118.1(3) 115.58(16)
C(13)-C(12)-C(11)119.4(3) 119.76(18)
C(12)-C(13)-C(14)118.1(3) 118.04(18)
C(14)-N(1)-C(10)117.5(3) 119.27(16)
C(11)-C(10)-C(14) 116.77(14)
C(14)-C(10)-C(9) 123.54(15)
N(1)-C(12)-C(11) 124.19(16)
C(13)-C(14)-C(10) 119.44(15)
C(12)-N(1)-C(13) 115.91(14)
C(1)-O(2)-H(2) 114.4(18)
O(2)-C(1)-C(2) 113.39(16)
O(1)-C(1)-O(2) 124.11(17)
Table
Table 4. Torsion angles (°) for compounds I, II and III.
Table 4. Torsion angles (°) for compounds I, II and III.
IIIIII
O(1)-C(1)-C(2)-C(3)−172.1(3)179.57(16)170.38(19)
O(1)-C(1)-C(2)-C(7)7.5(5)−1.9(3)−8.9(3)
C(4)-C(5)-C(8)-C(9)1.0(5)−4.6(2)−165.4(2)
C(6)-C(5)-C(8)-C(9)179.5(3)175.87(15)15.8(3)
C(5)-C(8)-C(9)-C(10)178.9(3)178.74(15)−179.94(17)
C(8)-C(9)-C(10)-C(11)−178.5(3)−178.21(15)19.0(3)
C(8)-C(9)-C(10)-N(1)0.4(5) −161.1(2)
N(1)-C(10)-C(11)-C(12)−0.8(5)0.0(3)1.9(3)
C(9)-C(10)-C(11)-C(12)178.1(3)178.96(14)−178.31(19)
C(9)-C(10)-N(1)-C(14)−178.8(3) 178.04(16)
C(10)-C(11)-C(12)-C(13)0.7(5) 0.0(3)
C(11)-C(12)-C(13)-C(14)−0.1(5) −1.6(3)
C(12)-C(13)-C(14)-N(1)−0.6(5) 1.4(3)
C(13)-C(14)-N(1)-C(10)0.6(5)0.1(2)0.5(3)
C(11)-C(10)-N(1)-C(14)0.1(4) −2.1(3)
C(8)-C(9)-C(10)-C(14) 1.2(3)
C(14)-C(10)-C(11)-C(12) −0.5(2)
C(11)-C(10)-C(14)-C(13) 0.4(2)
C(9)-C(10)-C(14)-C(13) −178.99(15)
C(11)-C(12)-N(1)-C(13) 0.5(2)
C(14)-C(13)-N(1)-C(12) −0.6(2)
O(2)-C(1)-C(2)-C(3) −9.3(3)
O(2)-C(1)-C(2)-C(7) 171.38(17)
In contrast, for III, the structure was comprised of three groups, phenyl, pyridyl and a double bond; the –COOH group was not completely coplanar due most likely to the intermolecular H-bonding between OH group of one molecule N and nitrogen atoms of a symmetry-related pyridine ring [O(2)-H(2)…N(1), 1.669 Å, O(2)-H(2), 0.97(3) Å, O(1)…N(1) 2.642 Å, O(2)-H(2)…N(1) 178.29°], symmetry code: 2−x, −1/2+y, 1−z. Figure 2 illustrates that in the molecular structure, the styryl-moiety is moved out the plane that contains the pyridine ring. The torsion angle (Table 4), between C(6)-C(5)-C(8)-C(9) is 15.8(3)° and between C(4)-C(5)-C(8)-C(9) is −165.4(2)°. With respect to the pyridine ring, the plane was moved out with torsion angles between C(8)-C(9)-C(10)-N(1) of −161.1(2)°, between C(11)-C(10)-C(9)-C(8) of 19.0(3)°, and between C(15)-C(16)-C(18)-C(19) of −15.7(2)°.
Figure 1 and Figure 2 show that compound III displayed a rotation in the opposite direction to that of compounds I and II. This was an interesting outcome because even though the double bond exhibited a trans configuration, its position showed a different arrangement compared to several previously reported styrylpyridines [43,44,45,46,47,48,49,50,51]. According to a recently calculated report [52] of the energy for the conformation of 2-styrylpyridine, the nitrogen atom of the pyridine could rotate around the bond between the double bond and the pyridine ring to diminish the steric effects of the proton of the ring with the protons of double bond H(1) or H(2) (Scheme 1). In the calculated results, the energy corresponding to the syn form (a) is 5.561 KJ mol−1 and for trans form (b) is 4.536 KJ mol−1, indicating that rotamer (b) should be more stable than (a), by almost 3 orders of magnitude order at the theory level. In contrast to the X-ray crystallography of III, in its molecular structure, the proton H(1) is located syn to the nitrogen atom even in the presence of a free pair of electrons that should contribute to destabilization of the molecule, according to different reports. This configuration is an indication of the possible presence of different rotamers. However, the molecular structure of III was obtained with proton H(1) located in a syn configuration. The molecular packing also showed weaker intermolecular interactions in form of face to face and side by side (π-π) molecular stacking.
Molecules 20 05793 g002 550
Figure 2. Molecular crystal packing of I, II and III short contacts (dashed red lines).
Figure 2. Molecular crystal packing of I, II and III short contacts (dashed red lines).
Molecules 20 05793 g002
Molecules 20 05793 g008 550
Scheme 1. Rotamers where the pyridine group could be in syn (a) or anti (b) configuration for 2-styrylpyridine.
Scheme 1. Rotamers where the pyridine group could be in syn (a) or anti (b) configuration for 2-styrylpyridine.
Molecules 20 05793 g008

2.2. Characterization of trans-4-((E)-2-(Pyridin-2-yl)vinyl)benzamido-TEMPO (V)

Characterization by IR of trans-4-((E)-2-(pyridin-2-yl)vinyl)benzamido-TEMPO (V) (Figure 3) showed characteristic bands at 1661 cm−1 and 1587 cm−1 which were assigned to the ν(C=O) and ν(C-N) corresponding to the amide group (−C(O)NH) present in the compound. Also, the vibration corresponding to ν(N-O•) from nitroxyl group is observed at 1360 cm−1, which is in agreement with the experimental and calculations reports [56,57,58]. In addition, bands at 3545 cm−1, 3008 cm−1, 2925 cm−1 and 977 cm−1 which correspond to ν(N-H), ν(C-H, aromatic), ν(CH2) and δ(=C-H, trans) vibration are observed. Also, at 1259 cm−1 there is a weak band corresponding to the interaction between N-H bending and C-N stretching of the amide group. This spectral evidence gave information about the formation of V. Currently, investigations to acquire the 1H-NMR spectrum of the corresponding hydroxylamine analogue are underway. The outcome of these studies should give more evidence regarding the conformation of V.
Molecules 20 05793 g003 550
Figure 3. IR spectrum corresponding to trans-4-((E)-2-(pyridin-2-yl)vinyl)benzamido-TEMPO (V).
Figure 3. IR spectrum corresponding to trans-4-((E)-2-(pyridin-2-yl)vinyl)benzamido-TEMPO (V).
Molecules 20 05793 g003

2.3. One Photon Absorption Characterization

Absorption spectra of the 2-styrylpyridine and 4-styrylpyridine (Figure 4) were recorded in methanol in allow comparison with the compounds I, II, III and IV and to evaluate the effect of the −CHO and −COOH substituents (Figure 5 and Figure 6). An insignificant red shift in the absorption wavelength occurred due to presence of −COH for both isomers. The 2-styrylpyridine compound exhibited one band at 309 nm corresponding to the π→π* transition characteristic for a double bond in the trans position; this result agreed well with previous reports [45,50,52]. 4-Styrylpyridine exhibited an absorption band at 303 nm corresponding to the π→π* transition due to the double bond, which is in agreement with theoretical reports [59,60]. The spectra for both isomers I and II displayed a significant red shift as compared with the corresponding 2- and 4-styrylpyridine compounds (Figure 5) due to the presence of the −COH in both isomers. Compound I exhibited a stronger red shift than did II. However, for compounds III and IV in the acid form, the −COOH group had little effect on the absorption wavelength position (Figure 6). Compounds III–IV showed an absorption at 232 nm, which could be assigned to the transition of the n→π* of the electron-withdrawing −COOH. This red shift was related to intermolecular hydrogen bonding interactions between two adjacent groups. The spectrum of compound V (Figure 7) was completely different, but the band at λmax 289 nm could attribute to the chromophore N-O present in the structure [61].
Molecules 20 05793 g004 550
Figure 4. Absorption spectra of 2-styrylpyridine and 4-styrylpyridine in methanol.
Figure 4. Absorption spectra of 2-styrylpyridine and 4-styrylpyridine in methanol.
Molecules 20 05793 g004
Molecules 20 05793 g005 550
Figure 5. Absorption spectra of (I) and (II).
Figure 5. Absorption spectra of (I) and (II).
Molecules 20 05793 g005
Molecules 20 05793 g006 550
Figure 6. Absorption spectra of the (III) and (IV) respectively.
Figure 6. Absorption spectra of the (III) and (IV) respectively.
Molecules 20 05793 g006
Molecules 20 05793 g007 550
Figure 7. Absorption spectrum of (V).
Figure 7. Absorption spectrum of (V).
Molecules 20 05793 g007

3. Experimental Section

3.1. Materials and Instrumentation

Methylpyridines, p-terephthalaldehyde, NH2-TEMPO, oxalyl chloride, DMF, and CH2Cl2, were acquired from Aldrich Chemical Co. (Toluca, México) and were purified before use. The Jones reagent was prepared during the oxidation reaction. Melting points were measured with an SEV (0–300 °C) apparatus and were reported as uncorrected values. IR spectra of the products were recorded on a Vertex (model 70, Bruker Optics, Ettlingen, Germany) 750 FT-IR spectrophotometer by attenuated total reflectance (ATR). 1H-NMR and 13C-NMR spectra were obtained in CDCl3 and DMSO-d6, on a Varian 400 MHz NMR spectrometer (Varian NMR, Walnut Creek, CA, USA). The electron ionization (EI) spectra were acquired on a JeolMStation 700-D mass spectrometer (Jeol USA, Peabody, MA, USA). UV-Vis spectra were acquired with a Spectrometer SD2000 (Ocean Optics, Dunedin, FL, USA) equipped with a pulse Xenon light source PX-2 (Ocean Optics). The solvent used for measurements in solution was methanol of spectroscopic grade and was preliminarily checked for the absence of absorbing impurities within the scanned spectral ranges.

3.2. Synthesis and Characterization of Precursors I–IV

The precursors trans-4[-(2-(pydridin-2-yl)vinyl)]benzaldehyde (I) and trans-4[-(2-(pyridin-4-yl)vinyl]-benzaldehyde (II) were prepared as follows. The basic structures of (I) and (II) were modified by oxidation of the –COH group to a carboxylic acid (III and IV) (Scheme 2). Then, trans-(E)-4-(2-(pydridin-2-yl)vinylbenzoic acid (III) was condensed with amino-TEMPO to obtain the trans-4-((E)-2-(pyridin-2-yl)vinyl)benzamido-TEMPO (V) (Scheme 3).
Molecules 20 05793 g009 550
Scheme 2. Syntheses of trans-4-(2-(pyridin-2-yl)vinylbenzaldehyde (I), trans-4-(2-(pyridin-4-yl)vinylbenzaldehyde (II), trans-4-(2-(pydridin-2-yl)vinylbenzoic acid (III), (E)-4-(2-(pydridin-4-yl)vinylbenzoic acid (IV).
Scheme 2. Syntheses of trans-4-(2-(pyridin-2-yl)vinylbenzaldehyde (I), trans-4-(2-(pyridin-4-yl)vinylbenzaldehyde (II), trans-4-(2-(pydridin-2-yl)vinylbenzoic acid (III), (E)-4-(2-(pydridin-4-yl)vinylbenzoic acid (IV).
Molecules 20 05793 g009
Molecules 20 05793 g010 550
Scheme 3. Synthesis of trans-4-((E)-2-(pyridin-2-yl)vinyl)benzamido-TEMPO (V).
Scheme 3. Synthesis of trans-4-((E)-2-(pyridin-2-yl)vinyl)benzamido-TEMPO (V).
Molecules 20 05793 g010
Compounds I and II were obtained by slight modifications of the reported methodology [43]. Terephthaldehyde (2.35 g; 25.3 mmol) with 2-methylpyridine for I and 4-methylpyridine for II (2.5 mL; 25.3 mmol) were refluxed in the absence of a condensing agent at 120 °C for 50–60 h. In both cases the reaction mixtures were oily and had brown or red-brown color. The mixture was treated with a solution of 2 N NaOH (643 mL) to precipitate a solid. The products were purified by recrystallization with cyclohexane and characterized by IR, 1H-NMR, EI and single crystal X-ray crystallography. The yields were 18.81% (I) and 20.12% (II). The melting point was 80–81 °C and 109–111 °C for (I) and (II), respectively.
(I) IR(KBr), ν ˜ /cm−1: 1695 (sharp, νC=O), 1599 (w, νC=N Py), 1600 (broad, νC=C Ar), 974 (s, δC-H CHR1=CHR2 in trans). 1H-NMR (500 MHz, CD3Cl) δ (ppm): 10.03 (s, 1H), 8.67–8.66 (dd, 1H, JH-H = 5.5; 4.5; 0.5), 7.93–7.91 (dd, 2H, JH-H = 8; 6.5; 1.5), 7.76–7.72 (m, 4H, JH-H = 8.5; 6; 5.5; 5.0), 7.46–7.44 (d, 1H, JH-H = 8), 7.35–7.32 (d, 1H, JH-H = 16), 7.25–7.21 (dd, 1H, JH-H = 16). EI (m/z, %): molecular ion 209 [M+, 25], 208 (92), 180 (15), 178 (6), 133 (100), 105 (52), 77 (50).
(II) IR (KBr): ν ˜ /cm−1:1688 (sharp, νC=O), 1567 (w, νC=N, Py), 1598 (broad, νC=C, Ar), 979 (s, δC-H CHR1=CHR2 in trans). 1H-NMR (500 MHz), (CD3Cl): δ (ppm): 10.03 (s, 1H), 8.64–8.63 (d, 2H, JH-H = 6), 7.93–7.91 (dd, 2H, JH-H = 8.5), 7.37–7.34 (d, 1H, JH-H = 16), 7.19–7.16 (d, 1H, JH-H = 16), 7.71–7.7 (d, 2H, JH-H = 8.5), 7.42–7.40 (dd, 2H, JH-H = 8; 5). EI (m/z, %): 209 [M+, 100], 208 (77), 180 (96), 178 (10), 104 (7), 76 (15).

3.2.1. Synthesis and Characterization of trans-(E)-4-(2-(Pydridin-2-yl)vinylbenzoic acid and trans-(E)-4-(4-(pydridin-4-yl)vinylbenzoic acid (III and IV)

For both compounds, the oxidation reaction used the Jones reagent, which was prepared with 0.66 g of CrO3 (6.6 mmol) dissolved in H2O. To the solution, an adequate quantity of H2SO4 was added until a red precipitate formed. An acetone solution with 1.38 g (6.6 mmol) I or II was prepared at room temperature and it was added to the solution of Jones reagent dissolved in small quantity of water. The reaction mixture was refluxed for about 24 h. After the mixture was treated with NaHCO3/H2O to reach pH = 7, a yellow precipitate (III or IV) formed. The solid III was purified by recrystallization with a solvents mixture of H2O/acetone (80:20), whereas IV was recrystallized with DMF:CH3OH (20:80). Finally, the compounds were treated with heated hexane to eliminate any remains of I and II. The products III and IV were characterized by IR, 1H-, 13C-NMR and EI. Compound III was further characterized by single crystal X-ray crystallography. The yields were 39.40% for III and 11.27% for IV; the melting point of III was of 217–220 °C while IV did not present a melting point >300 °C.
(III) IR (KBr): ν ˜ /cm−1: 1692 (s and broad, νC=O), 1601 (w, νC=C, Ar), 1569 (νC=N, Py), 1281 (s, wide, νC-O), 964 (s, δC-H CHR1=CHR2 in trans). 1H-NMR (500 MHz), (DMSO-d6): δ (ppm): 12.97 (wide signal, 1H) 8.61–8.60 (dd, 1H, JH-H = 5.5, 4.5, 3.5), 7.97–7.95(dd, 2H, JH-H = 8), 7.84–7.58 (m, 4H, JH-H = 16, 8, 6, 5.5), 7.60–7.58 (dd, 1H, JH-H =8), 7.48–7.45 (dd, 1H, JH-H = 16), 7.31–7.28 (m, 1H, JH-H = 5.5). 13C (500MHz), (DMSO-d6) δ (ppm): 167.73 (COOH), 155.16 (Ar), 150.29 (py), 141.35 (py), 137.61 (Ar), 131.55 (Ar), 131.15 (CH=CH), 130.8 (Ar), 130.49 (Ar), 127.76 (CH=CH), 123.62 (py), 123.52 (py). EI (m/z, %): 225 [M+, 22], 224 (100), 178 (7), 87 (15).
(IV) IR (KBr): ν ˜ /cm−1: 2435 (s, wide, COH…OC), 1699 (s and broad, νC=O), 1604 (w, νC=C, Ar,), 1567 (w, νC=N, Py), 1286(s, wide, νC-O), 959 (s, δC-H CHR1=CHR2 in trans). 1H-NMR (500 MHz), (CD3)2SO), δ (ppm): 8.59–8.58 (dd, 2H, JH-H = 5.5), 7.98–7.96 (d, 2H, JH-H = 8.5), 7.79–7.77 (dd, 2H, JH-H = 8), 7.65–7.60 (m, 3H, JH-H = 17.5, 6), 7.43–7.39 (dd, 1H, JH-H = 16.5). 13C (DMSO-d6), δ (ppm): 167.49 (COOH), 150.6 (py), 144.31 (py), 140.85 (Ar), 132.42 (Ar), 131.0 (CH=CH), 130.29 (Ar), 128.90 (Ar), 127.57 (CH=CH), 121.57 (py). EI (m/z, (%): 225 [M+, 18], 206 (90), 180 (60), 178 (20), 152 (41), 102 (7), 76 (10).

3.2.2. Condensation Reaction to Obtain the trans-4-((E)-2-(Pyridin-2-yl)vinyl)benzamido-TEMPO (V)

To synthesize V, carboxylic acid III was reacted with 4-NH2-TEMPO using oxalyl chloride, DMF and CH2Cl2 [62] (Scheme 3). To a three-necked flask was added 0.22 g (1 mmol) of III dissolved in 5 mL of DMF at 4 °C. The mixture was reacted for 30 min with stirring and then oxalyl chloride (0.22 mL, 2 mmol) was added, and the temperature was increased to room temperature. 4-Amino TEMPO (NH2-TEMPO) (0.170 g, 1 mmol) dissolved in DMF was then added. The mixture was stirred for 48 h at 90 °C. During this time the mixture changed from light yellow to orange and finally to orange-pink. After the reaction time, the mixture was treated with acetone/H2O (2:1) to precipitate an orange solid, which was isolated by vacuum-filtration. The solid was purified by recrystallization with a mixture of EtOH/ethyl acetate (1:1); yield was 35% with m.p. of 140–142 °C.

3.3. Crystallization of Compounds I, II and III

Crystals of I were obtained with 55 mg of I dissolved in 3 mL of a mixture of solvents THF/hexane (80:20) and kept at room temperature. After 24 h, colorless crystals were formed.
Crystals of II were obtained with 55 mg of compound II dissolved in 5 mL of EtOH/cyclohexane (80:20). The solution was kept at room temperature and allowed to slowly evaporate and after 2 days, crystals were formed.
Crystals of III were obtained with 4 mg of compound III dissolved in 5 mL of MeOH/DMF (80:20) at high temperature. The solution was kept at 4 °C and allowed to slowly evaporate. After 8 days, crystals were obtained.

3.4. X-ray Crystallography

All reflection intensities of I and III were measured at 110(2) K and for II at 100(2) K using a SuperNova diffractometer (equipped with Atlas detector) with Cu Kα radiation (λ = 1.54178 Å). The program CrysAlisPro (Version 1.171.36.32 2013, Agilent Technologies, Santa Clara, CA, USA) was used to refine the cell dimensions and for data reduction. The structures were solved with the program SHELXS-2013 and were refined on F2 with SHELXL-2013 [63]. Empirical absorption correction using spherical harmonics implemented in the SCALE3 ABSPACK scaling algorithm was applied using CrysAlisPro (Version 1.171.36.32). The temperature of the data collection was controlled using the system Cryojet (manufactured by Oxford Instruments, Abingdon, Oxford, UK). The H atoms were placed at calculated positions using the instructions AFIX 43 with isotropic displacement parameters having values 1.2 times Ueq of the attached C atoms. The H atom attached to O2 was found from the difference Fourier map, and its coordinates were refined freely.

4. Conclusions

We have synthesized precursors of styrylpyridine in good yield and they were well characterized. The crystallography data gave evidence that the molecular structure of the double bond was in the trans conformation, as well as that one of the phenyl rings in III was twisted appreciably and featured an intermolecular hydrogen bond with one of the neighboring complexes to form a one-dimensional or two-dimensional network. These intermolecular interactions would induce cooperative effects, leading to good conjugation properties. Finally, this methodology has developed a general method to functionalize the synthesized precursors III–VI with NH2-TEMPO.

Supplementary Materials

Crystallographic data (excluding structure factors) reported in this paper have been deposited with the Cambridge Crystallographic Data Centre as supplementary publication no. CCDC 1054889, 1054890, 1054891. Copies of available material can be obtained, free of charge, on application to the CCDC, 12 Union Road. Cambridge CB2 IEZ, UK, fax: +44-(0)1223-336033 or e-mail: [email protected].

Acknowledgments

The authors wish to express their gratitude to VIEP-BUAP (projects PEZM-NAT15-G, CHCV-NAT15-G and SOMJ-NAT15-I), PROMEP-SEP (Thematic network of collaboration and CONACyT (projects 157552 and 183833), as well as to Maxime A. Siegler (Johns Hopkins University) for his valuable help with the X-ray crystallography and Vladimir Carranza for assistance with EI mass spectrometry.

Author Contributions

Conceived and designed the experiments: M.C., G.S-M. and M.J.P.; Performed the experiments: M.C. and A.L.S.; Analyzed the data: M.J.P., G.S-M.; Contributed reagents/materials/analysis tools: M.J.P., G.S-M., V.M.CH. and M.E.C.; Wrote the paper G.S-M. and M.J.P. All authors read and approved the final manuscript.

Conflicts of Interest

The authors declare no conflict of interest.

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MDPI and ACS Style

Soriano-Moro, G.; Percino, M.J.; Sánchez, A.L.; Chapela, V.M.; Cerón, M.; Castro, M.E. X-ray Structures of Precursors of Styrylpyridine-Derivatives Used to Obtain 4-((E)-2-(Pyridin-2-yl)vinyl)benzamido-TEMPO: Synthesis and Characterization. Molecules 2015, 20, 5793-5811. https://doi.org/10.3390/molecules20045793

AMA Style

Soriano-Moro G, Percino MJ, Sánchez AL, Chapela VM, Cerón M, Castro ME. X-ray Structures of Precursors of Styrylpyridine-Derivatives Used to Obtain 4-((E)-2-(Pyridin-2-yl)vinyl)benzamido-TEMPO: Synthesis and Characterization. Molecules. 2015; 20(4):5793-5811. https://doi.org/10.3390/molecules20045793

Chicago/Turabian Style

Soriano-Moro, Guillermo, María Judith Percino, Ana Laura Sánchez, Víctor Manuel Chapela, Margarita Cerón, and María Eugenia Castro. 2015. "X-ray Structures of Precursors of Styrylpyridine-Derivatives Used to Obtain 4-((E)-2-(Pyridin-2-yl)vinyl)benzamido-TEMPO: Synthesis and Characterization" Molecules 20, no. 4: 5793-5811. https://doi.org/10.3390/molecules20045793

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