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Editorial

Introduction to “Intramolecular Hydrogen Bonding 2018”

Irish Centre for High-End Computing (ICHEC), Grand Canal Quay, Dublin 2, Ireland
Molecules 2019, 24(16), 2858; https://doi.org/10.3390/molecules24162858
Submission received: 5 August 2019 / Accepted: 6 August 2019 / Published: 7 August 2019
(This article belongs to the Special Issue Intramolecular Hydrogen Bonding 2018)
Non-covalent interactions have attracted the scientific attention during last decades as observed by the numerous studies in the literature [1,2,3,4], however, those are still hot topics. There is wide variety and rich ecosystem of non-covalent interactions: Hydrogen bonds [5], halogen bonds [6], chalcogen bonds [7,8,9,10], pnicogen bonds [11,12,13], tetrel bonds [14,15,16] and more recently, regium bonds [17].
Doubtless, the most prominent, and at the same time studied, interaction is the hydrogen bond (HB) [5]. Not only for the availability of the atoms involved within the interactions but also for the versatility and presence of those HB across all fields, from protein shaping, DNA and RNA assembling, proton transfer processes, crystallisation, and without any doubt, in synthesis. For example, HBs are also of utmost importance in water nucleation and responsible of the variety of ice structures. In fact, Peng et al. studied the vibrations and spectra of ice X and XIV using Density Functional Theory (DFT) methods [18,19]. Another example of the importance of HBs are their influence on the solubility of drugs during the synthetic process. This is particularly important since impurities can be introduced during the synthesis which can have a huge impact on the crystallisation process. Shen et al. measured and modelled the solubility of Metoprolol succinate in different organic solvents involving HBs [20]. Also, HBs play a crucial role in supramolecular chemistry and molecular recognition. Martinez-Felipe et al. combined Fourier transform infrared spectroscopy and DFT calculations to study the molecular recognition using HB in light-responsive materials for optical and light-controlled delivery applications [21].
One particular and very interesting case of HBs occurs when the hydrogen acceptor and donor are within the same molecular unit, i.e., intramolecular hydrogen bond (IMHB). Intramolecular hydrogen bonds are known to play an important role on the structure and biological properties of compounds in medicinal chemistry [22,23]. As for example, IMBH formation is crucial in the process of diffusion of cyclic peptides through cell membranes [24]. However, IMHBs, as other intramolecular interactions, particularly difficult to analyse and measure, and thus, computational calculations in combination with NMR measures can provide reliable data to understand the nature and strength of such interactions [25].
As mentioned, HBs (both inter and intramolecular) are present in proton transfer processes [26,27], and can determine reaction rates and lower reaction barriers. Tschumper et al. studied the importance of IMHBs in the cis/trans conformation equilibrium for aziridine, phosphirane and thiirane analogs of 1,2-dialkyl-2,3-epoxycyclopentanol, where not only typical IMHBs can be found (O–H···O) but also another HB acceptors, such as S or P, can be found [28].
Another interesting feature found within non-covalent interactions happens when those interactions are conjugated with the carbon backbone and the interaction is affected by the presence of the resonant structures. Particularly, resonance assisted hydrogen bonds (RAHB) are one of the most successful and interesting structural concepts, since its definition by Gilli, Bellucci, Ferretti and Bertolasi in 1989 [29]. Several studies have been devoted to the study of RAHBs, both for inter [30] and intramolecular RAHB [31,32,33]. In fact, Martínez-Cifuentes et al. have studied the strength of intramolecular resonance assisted hydrogen bonding in o-carbonyl hydroquinones [25].
Finally, the interaction between HBs and other type of non-covalent interactions opens a new research line in which one of the interactions (whether HB or IMHB) can be influenced by the presence of another type of interactions or the other way around. This interplay can be co-operative, in which one of the interactions reinforces or enhances the other [34,35,36,37,38]. In the present issue, Alkorta et al. studied how the presence and absence of IMHB can affect the tetrel bond in a series of silyl and germanium derivatives [39].

Acknowledgments

The Guest Editor wish to thank all the authors for their contributions to this Special Issue, all the Reviewers for their work in evaluating the submitted articles and the editorial staff of Molecules for their kind assistance.

Conflicts of Interest

The authors declare no conflict of interest.

References

  1. Politzer, P.; Murray, J.S.; Clark, T. Halogen bonding and other σ-hole interactions: A perspective. Phys. Chem. Chem. Phys. 2013, 15, 11178–11189. [Google Scholar] [CrossRef] [PubMed]
  2. Müller-Dethlefs, K.; Hobza, P. Noncovalent interactions:  A challenge for experiment and theory. Chem. Rev. 2000, 100, 143–168. [Google Scholar] [CrossRef] [PubMed]
  3. Sauvage, J.P.; Gaspard, P. From Non-Covalent Assemblies to Molecular Machines; Wiley-VCH: Weinheim, Germany, 2010. [Google Scholar]
  4. Politzer, P.; Murray, J.S. An Overview of σ-hole Bonding, an Important and Widely-Occurring Noncovalent Interaction Practical Aspects of Computational Chemistry; Leszczynski, J., Shukla, M.K., Eds.; Springer: Dordrecth, Netherlands, 2010; pp. 149–163. [Google Scholar]
  5. Arunan, E.; Desiraju Gautam, R.; Klein Roger, A.; Sadlej, J.; Scheiner, S.; Alkorta, I.; Clary David, C.; Crabtree Robert, H.; Dannenberg Joseph, J.; Hobza, P.; et al. Defining the hydrogen bond: An account (iupac technical report). Pure Appl. Chem. 2011, 83, 1619–1636. [Google Scholar] [CrossRef]
  6. Clark, T.; Hennemann, M.; Murray, J.; Politzer, P. Halogen bonding: The σ-hole. J. Mol. Model. 2007, 13, 291–296. [Google Scholar] [CrossRef] [PubMed]
  7. Wang, W.; Ji, B.; Zhang, Y. Chalcogen bond: A sister noncovalent bond to halogen bond. J. Phys. Chem. A 2009, 113, 8132–8135. [Google Scholar] [CrossRef] [PubMed]
  8. Bleiholder, C.; Werz, D.B.; Köppel, H.; Gleiter, R. Theoretical investigations on chalcogen−chalcogen interactions:  What makes these nonbonded interactions bonding? J. Am. Chem. Soc. 2006, 128, 2666–2674. [Google Scholar] [CrossRef] [PubMed]
  9. Chasteen, T.G.; Bentley, R. Handbook of Chalcogen Chemistry: New Perspectives in Sulfur, Selenium and Tellurium; Devillanova, F.A., Ed.; The Royal Society of Chemistry: Cambride, UK, 2007. [Google Scholar]
  10. Sanchez-Sanz, G.; Trujillo, C.; Alkorta, I.; Elguero, J. Intermolecular weak interactions in HTeXH dimers (X=O, S, Se, Te): Hydrogen bonds, chalcogen–chalcogen contacts and chiral discrimination. ChemPhysChem 2012, 13, 496–503. [Google Scholar] [CrossRef]
  11. Scheiner, S. The pnicogen bond: Its relation to hydrogen, halogen, and other noncovalent bonds. Acc. Chem. Res. 2013, 46, 280–288. [Google Scholar] [CrossRef]
  12. Zahn, S.; Frank, R.; Hey-Hawkins, E.; Kirchner, B. Pnicogen bonds: A new molecular linker? Chem. Eur. J. 2011, 17, 6034–6038. [Google Scholar] [CrossRef]
  13. Scheiner, S. Sensitivity of noncovalent bonds to intermolecular separation: Hydrogen, halogen, chalcogen, and pnicogen bonds. CrystEngComm 2013, 15, 3119–3124. [Google Scholar] [CrossRef]
  14. Bauzá, A.; Mooibroek, T.J.; Frontera, A. Tetrel-bonding interaction: Rediscovered supramolecular force? Angew. Chem. Int. Ed. 2013, 52, 12317–12321. [Google Scholar] [CrossRef]
  15. Grabowski, S.J. Tetrel bond-σ-hole bond as a preliminary stage of the SN2 reaction. Phys. Chem. Chem. Phys. 2014, 16, 1824–1834. [Google Scholar] [CrossRef]
  16. Wei, Y.; Cheng, J.; Li, W.; Li, Q. Regulation of coin metal substituents and cooperativity on the strength and nature of tetrel bonds. RSC Advances 2017, 7, 46321–46328. [Google Scholar] [CrossRef] [Green Version]
  17. Sánchez-Sanz, G.; Trujillo, C.; Alkorta, I.; Elguero, J. Understanding regium bonds and their competition with hydrogen bonds in Au2:HX complexes. ChemPhysChem 2019, 20, 1572–1580. [Google Scholar] [CrossRef]
  18. Jiang, L.; Yao, S.-K.; Zhang, K.; Wang, Z.-R.; Luo, H.-W.; Zhu, X.-L.; Gu, Y.; Zhang, P. Exotic spectra and lattice vibrations of ice x using the dft method. Molecules 2018, 23, 2780. [Google Scholar] [CrossRef]
  19. Zhang, K.; Zhang, P.; Wang, Z.-R.; Zhu, X.-L.; Lu, Y.-B.; Guan, C.-B.; Li, Y. DFT simulations of the vibrational spectrum and hydrogen bonds of ice xiv. Molecules 2018, 23, 1781. [Google Scholar] [CrossRef]
  20. Shen, J.; Liang, X.; Lei, H. Measurements, thermodynamic modeling, and a hydrogen bonding study on the solubilities of metoprolol succinate in organic solvents. Molecules 2018, 23, 2469. [Google Scholar] [CrossRef]
  21. Martinez-Felipe, A.; Brebner, F.; Zaton, D.; Concellon, A.; Ahmadi, S.; Piñol, M.; Oriol, L. Molecular recognition via hydrogen bonding in supramolecular complexes: A fourier transform infrared spectroscopy study. Molecules 2018, 23, 2278. [Google Scholar] [CrossRef]
  22. Giordanetto, F.; Tyrchan, C.; Ulander, J. Intramolecular hydrogen bond expectations in medicinal chemistry. ACS Medicinal Chemistry Letters 2017, 8, 139–142. [Google Scholar] [CrossRef]
  23. Kuhn, B.; Mohr, P.; Stahl, M. Intramolecular hydrogen bonding in medicinal chemistry. J. Med. Chem. 2010, 53, 2601–2611. [Google Scholar] [CrossRef]
  24. Rezai, T.; Bock, J.E.; Zhou, M.V.; Kalyanaraman, C.; Lokey, R.S.; Jacobson, M.P. Conformational flexibility, internal hydrogen bonding, and passive membrane permeability:  Successful in silico prediction of the relative permeabilities of cyclic peptides. J. Am. Chem. Soc. 2006, 128, 14073–14080. [Google Scholar] [CrossRef]
  25. Martínez-Cifuentes, M.; Monroy-Cárdenas, M.; Millas-Vargas, J.P.; Weiss-López, B.E.; Araya-Maturana, R. Assessing parameter suitability for the strength evaluation of intramolecular resonance assisted hydrogen bonding in o-carbonyl hydroquinones. Molecules 2019, 24, 280. [Google Scholar] [CrossRef]
  26. Alkorta, I.; Sánchez-Sanz, G.; Trujillo, C.; Azofra, L.M.; Elguero, J. A theoretical reappraisal of the cyclol hypothesis. Struct. Chem. 2012, 23, 873–877. [Google Scholar] [CrossRef] [Green Version]
  27. Trujillo, C.; Sánchez-Sanz, G.; Alkorta, I.; Elguero, J. Computational study of proton transfer in tautomers of 3- and 5-hydroxypyrazole assisted by water. ChemPhysChem 2015, 16, 2140–2150. [Google Scholar] [CrossRef]
  28. Smith, E.B.; Carr, M.J.; Tschumper, S.G. Cis/trans energetics in epoxide, thiirane, aziridine and phosphirane containing cyclopentanols: Effects of intramolecular OH⋯O, S, N and P contacts. Molecules 2019, 24, 2523. [Google Scholar] [CrossRef]
  29. Gilli, G.; Bellucci, F.; Ferretti, V.; Bertolasi, V. Evidence for resonance-assisted hydrogen bonding from crystal-structure correlations on the enol form of the β-diketone fragment. J. Am. Chem. Soc. 1989, 111, 1023–1028. [Google Scholar] [CrossRef]
  30. Trujillo, C.; Sánchez-Sanz, G.; Alkorta, I.; Elguero, J.; Mó, O.; Yáñez, M. Resonance assisted hydrogen bonds in open-chain and cyclic structures of malonaldehyde enol: A theoretical study. J. Mol. Struct. 2013, 1048, 138–151. [Google Scholar] [CrossRef]
  31. Sanz, P.; Mó, O.; Yáñez, M.; Elguero, J. Resonance-assisted hydrogen bonds:  A critical examination. Structure and stability of the enols of β-diketones and β-enaminones. J. Phys. Chem. A 2007, 111, 3585–3591. [Google Scholar] [CrossRef]
  32. Sanz, P.; Mó, O.; Yáñez, M.; Elguero, J. Non-resonance-assisted hydrogen bonding in hydroxymethylene and aminomethylene cyclobutanones and cyclobutenones and their nitrogen counterparts. ChemPhysChem 2007, 8, 1950–1958. [Google Scholar] [CrossRef]
  33. Sanz, P.; Mó, O.; Yáñez, M.; Elguero, J. Bonding in tropolone, 2-aminotropone, and aminotroponimine: No evidence of resonance-assisted hydrogen-bond effects. Chem. Eur. J. 2008, 14, 4225–4232. [Google Scholar] [CrossRef]
  34. Alkorta, I.; Sánchez-Sanz, G.; Elguero, J.; Del Bene, J.E. Influence of hydrogen bonds on the p···p pnicogen bond. J. Chem. Theor. Comput. 2012, 8, 2320–2327. [Google Scholar] [CrossRef]
  35. Del Bene, J.E.; Alkorta, I.; Sánchez-Sanz, G.; Elguero, J. Interplay of fF-H...F hydrogen bonds and p...N pnicogen bonds. J. Phys. Chem. A 2012, 116, 9205–9213. [Google Scholar] [CrossRef]
  36. Sánchez-Sanz, G.; Trujillo, C.; Alkorta, I.; Elguero, J. Enhancing intramolecular chalcogen interactions in 1-hydroxy-8-YH-naphthalene derivatives. J. Phys. Chem. A 2017, 121, 8995–9003. [Google Scholar] [CrossRef]
  37. Sánchez-Sanz, G.; Trujillo, C.; Alkorta, I.; Elguero, J. Modulation of in:out and out:out conformations in [X.X′.X′′] phosphatranes by lewis acids. Phys. Chem. Chem. Phys. 2017, 19, 20647–20656. [Google Scholar] [CrossRef]
  38. Sánchez-Sanz, G.; Trujillo, C.; Alkorta, I.; Elguero, J. Competition between intramolecular hydrogen and pnictogen bonds in protonated systems. Theor. Chem. Acc. 2016, 135, 140. [Google Scholar] [CrossRef]
  39. Trujillo, C.; Alkorta, I.; Elguero, J.; Sánchez-Sanz, G. Cooperative effects in weak interactions: Enhancement of tetrel bonds by intramolecular hydrogen bonds. Molecules 2019, 24, 308. [Google Scholar] [CrossRef]

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Sánchez, G. Introduction to “Intramolecular Hydrogen Bonding 2018”. Molecules 2019, 24, 2858. https://doi.org/10.3390/molecules24162858

AMA Style

Sánchez G. Introduction to “Intramolecular Hydrogen Bonding 2018”. Molecules. 2019; 24(16):2858. https://doi.org/10.3390/molecules24162858

Chicago/Turabian Style

Sánchez, Goar. 2019. "Introduction to “Intramolecular Hydrogen Bonding 2018”" Molecules 24, no. 16: 2858. https://doi.org/10.3390/molecules24162858

APA Style

Sánchez, G. (2019). Introduction to “Intramolecular Hydrogen Bonding 2018”. Molecules, 24(16), 2858. https://doi.org/10.3390/molecules24162858

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