The Role of the HOXA Gene Family in Acute Myeloid Leukemia
Abstract
:1. Introduction
2. Materials and Methods
2.1. Ethics Statement
2.2. ONCOMINE Database Analysis
2.3. The Gene Expression Profiling Interactive Analysis (GEPIA) Dataset
2.4. The LinkedOmics Dataset
2.5. TCGA Data and the cBioPortal
2.6. Functional Enrichment and Bioinformatics Analysis
3. Results
3.1. The Transcriptional Expression of HOXA Genes in Leukemia Patients
3.2. Genetic Alteration and Correlations of HOXA Genes in AML
3.3. Predicted Functions and Pathway Enrichment Analysis of HOXA Genes in AML Patients
4. Discussion
5. Conclusions
Author Contributions
Funding
Conflicts of Interest
References
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Gene | Types of leukemia vs. Normal Samples | Fold Change | P Value | t-Test | Reference |
---|---|---|---|---|---|
HOXA1 | Acute Myeloid Leukemia vs. Normal | 3.451 | 1.95E-07 | 9.046 | Valk [23] |
Acute Adult T-Cell Leukemia/Lymphoma vs. Normal | 10.084 | 3.46E-05 | 7.407 | Choi [24] | |
HOXA2 | NA | NA | NA | NA | NA |
HOXA3 | Acute Myeloid Leukemia vs. Normal | 2.230 | 2.48E-68 | 19.863 | Haferlach [25] |
Pro-B Acute Lymphoblastic Leukemia vs. Normal | 3.975 | 8.57E-19 | 11.883 | Haferlach [25] | |
HOXA4 | Acute Myeloid Leukemia vs. Normal | 8.083 | 4.21E-06 | 6.951 | Andersson [26] |
Pro-B Acute Lymphoblastic Leukemia vs. Normal | 2.065 | 8.86E-16 | 10.006 | Haferlach [25] | |
HOXA5 | Acute Myeloid Leukemia vs. Normal | 6.584 | 7.75E-05 | 5.292 | Stegmaier [27] |
Acute Myeloid Leukemia vs. Normal | 2.522 | 2.78E-38 | 14.237 | Haferlach [25] | |
Pro-B Acute Lymphoblastic Leukemia vs. Normal | 4.359 | 1.35E-15 | 9.826 | Haferlach [25] | |
HOXA6 | Pro-B Acute Lymphoblastic Leukemia vs. Normal | 2.012 | 2.30E-14 | 9.174 | Haferlach [25] |
HOXA7 | Acute Myeloid Leukemia vs. Normal | 2.027 | 1.40E-67 | 19.782 | Haferlach [25] |
HOXA9 | Acute Myeloid Leukemia vs. Normal | 53.046 | 3.68E-07 | 9.445 | Stegmaier [27] |
Acute Myeloid Leukemia vs. Normal | 2.483 | 2.88E-33 | 13.493 | Haferlach [25] | |
Acute Myeloid Leukemia vs. Normal | 2.986 | 9.55E-58 | 17.841 | Haferlach [25] | |
Pro-B Acute Lymphoblastic Leukemia vs. Normal | 7.209 | 1.32E-20 | 12.798 | Haferlach [25] | |
HOXA10 | Acute Myeloid Leukemia vs. Normal | 8.483 | 8.82E-06 | 7.123 | Stegmaier [27] |
Acute Adult T-Cell Leukemia/Lymphoma vs. Normal | 3.946 | 4.70E-05 | 4.888 | Choi [24] | |
Acute Myeloid Leukemia vs. Normal | 2.174 | 1.30E-40 | 14.641 | Haferlach [25] | |
Pro-B Acute Lymphoblastic Leukemia vs. Normal | 4.802 | 7.72E-19 | 11.645 | Haferlach [25] | |
HOXA11 | NA | NA | NA | NA | NA |
HOXA13 | NA | NA | NA | NA | NA |
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Chen, S.-L.; Qin, Z.-Y.; Hu, F.; Wang, Y.; Dai, Y.-J.; Liang, Y. The Role of the HOXA Gene Family in Acute Myeloid Leukemia. Genes 2019, 10, 621. https://doi.org/10.3390/genes10080621
Chen S-L, Qin Z-Y, Hu F, Wang Y, Dai Y-J, Liang Y. The Role of the HOXA Gene Family in Acute Myeloid Leukemia. Genes. 2019; 10(8):621. https://doi.org/10.3390/genes10080621
Chicago/Turabian StyleChen, Si-Liang, Zhe-Yuan Qin, Fang Hu, Yun Wang, Yu-Jun Dai, and Yang Liang. 2019. "The Role of the HOXA Gene Family in Acute Myeloid Leukemia" Genes 10, no. 8: 621. https://doi.org/10.3390/genes10080621