Identifying and Characterizing Regulatory Sequences in the Human Genome with Chromatin Accessibility Assays
AbstractAfter finishing a human genome reference sequence in 2002, the genomics community has turned to the task of interpreting it. A primary focus is to identify and characterize not only protein-coding genes, but all functional elements in the genome. The effort includes both individual investigators and large-scale projects like the Encyclopedia of DNA Elements (ENCODE) project. As part of the ENCODE project, several groups have identified millions of regulatory elements in hundreds of human cell-types using DNase-seq and FAIRE-seq experiments that detect regions of nucleosome-free open chromatin. ChIP-seq experiments have also been used to discover transcription factor binding sites and map histone modifications. Nearly all identified elements are found in non-coding DNA, hypothesizing a function for previously unannotated sequence. In this review, we provide an overview of the ENCODE effort to define regulatory elements, summarize the main results, and discuss implications of the millions of regulatory elements distributed throughout the genome. View Full-Text
Scifeed alert for new publicationsNever miss any articles matching your research from any publisher
- Get alerts for new papers matching your research
- Find out the new papers from selected authors
- Updated daily for 49'000+ journals and 6000+ publishers
- Define your Scifeed now
Sheffield, N.C.; Furey, T.S. Identifying and Characterizing Regulatory Sequences in the Human Genome with Chromatin Accessibility Assays. Genes 2012, 3, 651-670.
Sheffield NC, Furey TS. Identifying and Characterizing Regulatory Sequences in the Human Genome with Chromatin Accessibility Assays. Genes. 2012; 3(4):651-670.Chicago/Turabian Style
Sheffield, Nathan C.; Furey, Terrence S. 2012. "Identifying and Characterizing Regulatory Sequences in the Human Genome with Chromatin Accessibility Assays." Genes 3, no. 4: 651-670.