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Review

Lipase from Yarrowia lipolytica: Prospects as an Industrial Biocatalyst for Biotechnological Applications

by
Jessica Lopes da Silva
1,
Misael Bessa Sales
1,
Viviane de Castro Bizerra
1,
Millena Mara Rabelo Nobre
1,
Ana Kátia de Sousa Braz
1,
Patrick da Silva Sousa
2,
Antônio L. G. Cavalcante
3,
Rafael L. F. Melo
4,
Paulo Gonçalves De Sousa Junior
5,
Francisco S. Neto
2,
Aluísio Marques da Fonseca
1 and
José Cleiton Sousa dos Santos
1,2,*
1
Instituto de Engenharias e Desenvolvimento Sustentável, Universidade da Integração Internacional da Lusofonia Afro-Brasileira, Campus das Auroras, Redenção CEP 62790970, CE, Brazil
2
Departamento de Engenharia Química, Universidade Federal do Ceará, Campus do Pici, Bloco 709, Fortaleza CEP 60440554, CE, Brazil
3
Departamento de Química Analítica e Físico-Química, Universidade Federal do Ceará, Campus do Pici, Bloco 940, Fortaleza CEP 60455760, CE, Brazil
4
Programa de Pós-Graduação em Engenharia e Ciência de Materiais, Universidade Federal do Ceará—UFC, Campus do Pici, Fortaleza CEP 60440554, CE, Brazil
5
Departamento de Química Orgânica e Inorgânica, Centro de Ciências, Universidade Federal do Ceará, Campus Pici, Fortaleza CEP 60455760, CE, Brazil
*
Author to whom correspondence should be addressed.
Fermentation 2023, 9(7), 581; https://doi.org/10.3390/fermentation9070581
Submission received: 28 April 2023 / Revised: 5 June 2023 / Accepted: 12 June 2023 / Published: 21 June 2023

Abstract

:
This paper aims to present the advances related to the biotechnological application of lipases Y. lipolytica, presenting their properties and more efficient ways to use them in different industrial applications. Waste treatment and bioremediation highlight recent studies and advances and the interest in large-scale applications in the food sector and biofuel production. The USA and China, two major world powers in industy, are of utmost importance in the search for the improvement in the development and properties of a controlled system for the large-scale production of a significant number of applications of lipase from Y. lipolytica.

1. Introduction

The production of enzymes with unique properties for each type of process or that have a broad set of industrial methods aiming at large-scale production has been a topic widely analyzed in recent years [1,2]. It is a field in which biotechnology can actively contribute when we consider the reduction of waste and the decreased use of solvents in chemical reactions. In engineering, the reduction of these environmental impacts is significant because the adoption of sustainable practices is increasingly demanded by companies, arising from the relationship between ESG (environmental, social, and governance) and its point of convergence with the environment [3,4,5,6,7,8,9]. This paper aims to present and discuss the advances obtained by the study of lipase Y. lipolytica and the provisions of the future of its industrial applications.
Biocatalysis is a sustainable method that acts through a process that performs the insertion of enzymes into chemical reactions that act as catalysts, thus increasing the speed and restricting the level of excreta at the end of processes [10,11,12,13,14]. Lipase is an enzyme that catalyzes the hydrolysis of fatty acid esters [15,16], and Y. lipolytica is a yeast capable of producing lipase (Figure 1). Y. lipolytica is used in different industrial applications, e.g., bioprocesses such as biodiesel production, ester synthesis, and bioremediation, as well as assisting in food and pharmaceutical product synthesis processes [17,18,19,20].
The main characteristic of Y. lipolytica lipase is its ability to remain stable over an extensive pH and temperature range. In addition, it exhibits high activity in aqueous media, which makes it useful in applications involving the hydrolysis of fats in aqueous systems [21]. One property that draws attention is its specificity for medium- and long-chain fatty acid esters [22,23]. This makes the enzyme valuable in applications that require hydrolysis of fats, and it is used in the production of cleaning products because its action makes it more accessible to remove oils and fats present on surface areas.
Moreover, another point that makes the lipase Y. lipolytica an attractive option for industrial processes is that it is highly tolerant to organic solvents [24], which makes it suitable for applications in industrial processes involving the hydrolysis of esters in organic solutions.
Figure 2 shows data from an advanced bibliometric analysis using the Web of Science Core Collection platform with a database of 524 articles related to Y. lipolytica. The database was built with the keywords Y. lipolytica and lipase. Articles published between 2000 and 2022 were analyzed. The free software R Studio with the extension “bibliometrix::biblioshiny()” was used [25,26]. Figure 2a shows that the terms Y lipolytica, lipase, and purification were the words that appeared the most during this search period. Figure 2b shows that 2015 had the highest number of articles published in the area, with 42 articles. However, Figure 2c shows that the highest number of citations in the area occurred in 2002, with about 12 citations, using the terms of this research.
Based on the above rationale, this research addressed an advanced review and bibliometric analysis of scientific research related to Y. lipolytica. This review pays attention to the analysis of this yeast’s research evolution, updates, and study trends. This review contributes to the description of available technologies and methodologies for biotechnological applications, enabling the evaluation of different areas of use and exploring innovative opportunities to use its by-products in sustainable processes.

2. Lipase Biosynthesis from Extreme Yeasts

Producing lipases from extreme yeasts is defined as biosynthesis [27]. Extreme yeasts are microorganisms that can thrive and survive in extreme conditions, e.g., Highalt temperatures and pH [28]. The lipases synthesized by yeasts in these environments acquire these characteristics intrinsically and thus develop similar resistances, thus becoming thermo, halo, and osmo-tolerant lipases [29].
In general, lipases are enzymes with the potential to break ester bonds in fats and oils, resulting in fatty acids and glycerol [30]. Thus, applying these enzymes will be possible in different areas of industry, such as the production of detergents, biofuels, and even the food industry [4,31,32,33,34,35,36,37]. This diversity of applications is made possible due to the versatility of these biomolecules. Thus, the powerful yeast biosynthesis method becomes increasingly relevant and essential for these processes [38].
The lipase biosynthesis process in extreme yeasts occurs with the gene expression that produces these enzymes [39]. Thus, the genes encoding lipases are transcribed into messenger RNA (mRNA), which undergoes translation into protein during translation [40]. Messenger RNA is produced from DNA by RNA polymerase, following the genetic code present in DNA [41]. Finally, these enzymes are processed and secreted by the yeast into the external environment. On the other hand, they can remain inside the cells [39,40]. Secretion of lipases depends on the organism in question and the growth conditions [42].
However, the production of these lipases by extreme yeasts can be stimulated through various strategies such as selecting specific strains, optimization of cultivation, and even genetic engineering [43]. Ultimately, these strategies only increase the productivity, resistance, and activity of these lipases [44]. It is still important to highlight several species of extreme yeasts, such as Candida, Yarrowia, and Pichia [45,46,47]. Each species has its specificities that produce lipase production with distinct characteristics [48,49].
Still, concerning yeast species and their lipases, it is possible to highlight the types of tolerances already mentioned here in addition to those that classify these lipases [50]. Where thermotolerant lipases are obtained to maintain their activity even at elevated temperatures [51], these biomolecules have a specific structural stability that guarantees such resistance [52]. Among the enzymes synthesized by yeast, lipases from Candida antarctica type B and Rhizopus oryzae can be highlighted, which are used in the food, detergent, and biofuel industries [53,54].
Halotolerant lipases can maintain their activity in environments with high salt concentrations [55]. Changes in the structures of these lipases allow for improvements in their electrostatic and hydrophobic interactions, facilitating the transport of ions and favoring intracellular osmotic balance [56]. Examples of halotolerant lipases are those obtained from Y. lipolytica yeasts and Candida rugosa, which are applied in the food industry [57,58].
Finally, we highlight the osmotolerant lipases that can maintain activity in environments with high concentrations of solutes, sugars, and organic compounds [59]. This feature makes them able to remain unchanged in high osmotic conditions and resistant to the dehydrating effects of the environment, such as changes in electrostatic and hydrophobic interactions [60]. Examples of these species are lipases from Candida cylindracea and Debaryomyces hansenii, which are applied in industrial processes that require osmotic resistance and produce fermented foods, respectively [61,62].

3. Context of Y. lipolytica in a Bibliometric Review

An advanced bibliometric review is widely used to verify aspects of research that will contribute significantly to evaluating a particular field or subfield of study [63,64]. Several characteristics will be visualized from this type of analysis and used as a source of incremental knowledge for statistical analyses of the subject matter [65,66,67,68].
Figure 3 shows a bibliometric review of Y. lipolytica, which shows data obtained from the Web of Science Core Collection platform with a database of 524 articles related to Y. lipolytica (keywords: Y. lipolytica and Lipase, analysis period from 2000 to 2022). The software used for analysis was the free software R Studio with the extension “bibliometrix::biblioshiny()” and the software VOSviewer version 1.6.18 [69,70].
Figure 3a shows the publications of the countries of the globe in the related area. The bibliometrics showed that the countries that published the most were China, France, and Brazil, with 381, 236, and 213 publications, respectively. It is interesting to observe that Belgium, the country that appeared in fourth place in the number of publications, presented 90 publications, less than half of the country in third place. It was found that the first three countries mastered the theme in the analyzed period. Figure 3b shows co-authorship and research correlations between countries, forming well-defined clusters with different colors. China cooperates with India (73 articles) and has a robust connection with France. France has strong cooperation with Belgium, and Brazil has strong cooperation with Portugal (55 articles).
Figure 3c shows the production of authors over time. Nicaud J.M. was the author who presented the highest number of publications, with publications between 2000 and 2020. The year 2011 was the year in which this author presented the highest number of articles, with five articles with a total of 32 citations. Nicaud J.M. was also the author who presented the most significant number of articles, with 32 articles, followed by Yany and Destain J. with 24 and 23 articles, respectively. The authors with the most significant impact, and the highest H factor, were Nicaud J.M., Marty A., and Thonart P., with 24, 16, and 15 H factor indexes, respectively. Figure 3d shows the co-authorship between the authors. It is possible to observe six large distinct cooperation nuclei. It is possible to notice that the authors with the most significant impact are present in the blue core, while Thonart P. appears in greater cooperation with the authors in red. It is also possible to observe that, like the countries, all authors communicate with each other, showing that research related to Y. lipolytica is globalized.
Figure 3e shows the production of affiliations over time. The Univ. Fed. Rio de Janeiro, Beijing Univ. chem. Technol. and Huazhong Univ. Sci. and Technol. were the affiliations presenting the highest number of publications, with 94, 66, and 52, respectively. It can be seen that Beijing Univ. chem. Technol. has stagnated in the number of publications since 2017, while the other affiliations continue to grow constantly. Figure 3f shows co-authorship between affiliations. It is possible to observe five large distinct cooperation nuclei. The Univ. Fed. Rio de Janeiro stands out with the highest number of cooperation. However, the Univ. Fed. Rio de Janeiro is from Brazil, and that country is in third place in the number of publications. Therefore, we cannot necessarily relate the affiliation to the country that publishes the most since, as shown, publications in the area of Y. lipolytica have a global aspect in which authors of all countries cooperate.
Figure 4 shows the cross-country dependency wheel plot and the three-campus plot. The dependency wheel in Figure 4a shows that although China has the highest number of publications, countries such as France, Belgium, and Brazil generate a greater exchange of communication with other countries. In Figure 4b, the graph of three campuses reaffirms that research in the area of Y. lipolytica is globalized, where almost all authors communicate with each other, in a correlation between countries and affiliations. We highlight the authors who communicate the most from countries such as China, Brazil, Belgium, and France.
Figure 5 shows the journals that published the most from 2000 to 2022 and the articles with the highest number of citations, both obtained by the bibliometrics. Figure 5a shows the journals with the most articles. Applied Microbiology and Biotechnology, Bioresource Technology, and Process Biochemistry had the highest number of articles, with 21, 16, and 16, respectively. Figure 5b shows the articles with the most citations. The article entitled “Hydrophobic substrate utilization by the yeast Y. lipolytica, and its potential applications”, published by Fickers P. in 2005 in the journal FEMS Yeast Research, obtained the highest number of citations in the period [71]. With 436 citations, the article reports that the alkane-assimilating yeast Y. lipolytica very efficiently degrades hydrophobic substrates such as n-alkanes, fatty acids, fats, and oils for which it has specific metabolic pathways. Oxidative degradation to alkanes and triglycerides in Y. lipolytica is provided, with new insights arising from recent genome sequencing of this yeast [71]. The second article that obtained the highest number of citations was entitled “Y. lipolytica as a potential producer of citric acid from raw glycerol” and was published by Papanikolaou S. in 2002 in the Journal of Applied Microbiology, where it obtained a total of 256 citations [72]. The article studies the biochemical response of Y. lipolytica LGAM S(7)1 during growth in crude glycerol (the main by-product of biodiesel production plants) to produce metabolic products of industrial importance [72]. The third article with the highest number of citations was published by Bilal M. in 2018 in the International Journal of Biological Macromolecules, totaling 237 citations. The article “Magnetic nanoparticles as versatile carriers for enzymes immobilization: A review” comprehensively reviews the supportability of immobilizing enzymes where Y. lipolytica is present [73].
Table 1 shows the most cited articles, identifying the authors, year of publication, journal, and the reference for each article. It is possible to observe that the normalization of citations per year can be greater than that of the articles that have a more significant number of citations, as it is shown that the article by Bilal M. 2018 [73] has a greater total of normalized citations than the article by Fickers P. 2005 [71], which can be justified by being a more general article, which includes other enzymes in its text, not just Y. lipolytica.

4. Applications of the Lipases from Y. lipolytica

From the database that shows the applications of lipases from Y. lipolytica, it was possible to find 146 articles between the years 2000 to 2022 confirming the approach to be presented in the present work. The three most relevant articles have, respectively, 13 citations [80], 8 citations [81], and 165 citations [15]. The first two articles address the extracellular lipase from Y. lipolytica in different ways of application, in which they are similar in general aspects which portray the yeast and its strains. The third is a review that details the genetics, production, biochemical characterization, and especially, the biotechnological applications of Y. lipolytica regarding the production of lipases in several sectors destined for the environment and industries. Despite the difference in the number of citations of the articles, the relevancies are highlighted in a higher number of accesses to the article or the more significant number of recent works directly related to the theme to be analyzed. Several applications of Y. lipolytica are constantly featured in perfected studies, especially in biotechnological applications based on enzymatic engineering, in environmental methodologies that collaborate to minimize the impacts caused by pollution from ecologically correct processes that may come to be applied industrially. Thus, this will be the first study published in the literature that conducts a complete bibliometric analysis of Y. lipolytica and presents lipase from Y. lipolytica and its prospects as an industrial biocatalyst for biotechnological applications.
Y. lipolytica is a yeast belonging to the Ascomycota phylum that has been extensively studied for biotechnological applications in recent years [82]. Initially, the most significant interest in studies on Y. lipolytica was due to its particular physiological capabilities, such as its use of organic acids and long-chain hydrocarbons as substrates, in addition to having other characteristics, such as the production of high levels of lipolytic enzymes, the production of organic acids, such as pyruvate, from different carbon sources [83], as well as its condition of dimorphism, as it presents filamentous forms or yeast cells [84]. Y. lipolytica is considered a very interesting yeast for the production of heterologous proteins because it has an efficient transformation yield, production capacity, and stability related to gene integration. One of its most significant characteristics is the fact that it can secrete high amounts of metabolites, unicellular oil, extracellular proteins, and aroma, among other aspects, that make it academically and scientifically attractive for research [85]. It is an aerobic or aerobic and non-pathogenic yeast. All processes involving this microorganism are generally recognized as safe (GRAS) according to the FDA—American Food and Drug Administration (https://www.fda.gov/food/food-ingredients-packaging/generallyrecognized-safe-gras) (accessed on 15 March 2023).
Y. lipolytica is valuable for industries, especially pharmaceutical and food industries, for secreting large amounts of lipases [84]. Lipases are biocatalysts considered ecologically correct. They perform the process of catalyzing the hydrolysis of carboxylic acid esters in an aqueous phase, but they also perform the same process in reactions in organic solvents, such as in esterification and transesterification reactions [86,87]. The production of enzymes by microorganisms (OMs) from mutation process creation has been widely explored in a scientific environment for some years [88]. In a more recent study, Y. lipolytica Wt-11 was isolated with the aim of producing extracellular lipase, in which it was subjected to the mutation process of implantation of low energy ions, in which Y. lipolytica Mut-96 was obtained after the process; then, after the purification process had taken place, the characteristics and properties of the lipase found were identified. Subsequently, the enzymatic immobilization process took place for application in the synthesis process of L-ascorbyl palmitate, in which it is an ascorbyl ester and an antioxidant used in some foods due to its ability to scavenge oxygen [89], proposing a biotransformation route for the production of L-ascorbyl palmitate on an industrial scale [81].
The most attractive characteristics of the Y. lipolytica yeast already have complete studies that detail their properties and mechanisms of processes of potential applications, such as the degradation of hydrophobic substrates [71] and the production of natural derivatives [90]. Focusing on the enzymes produced by Y. lipolytica, it was shown that 16 paralogs of genes encode lipase, which was only possible to be discovered due to studies of the complete sequence of the genome of the haploid strain Y. lipolytica E150 (CLIB99) [91]. However, only a few extracellular lipase isozymes are known. They are synthesized by Y. lipolytica, which are Lip2p, Lip7p, and Lip8p, with Lip2p being the primary one [15], and have broad substrate specificity, ranging from medium-chain fatty acids to long-chain fatty acids. The enzymatic immobilization from the adsorption of Lip2p on celite and silica gel already shows expressive results that benefit its high performance, such as the protection of the lipase enzyme in alkaline pH and benefits in its thermoresistance capacity, in addition to the recovery of enzymatic activity being possible [92], which shows that the process of immobilization of extracellular lipase from Y. lipolytica is quite efficient and significantly conducive to reducing expenses involving this method.
Mediterranean countries are responsible for over 95% of the world’s olive oil production. Wastewater from these olive oil processing industries can cause high pollution loads for these countries and the environment [93]. The waters of the oil mills have pectins, metals, and sugars in their composition, in addition to fats and triglycerides. The yeast Y. lipolytica ATCC20255, among the different yeasts studied, was the one that obtained the best performances in terms of adaptation to growth in oil mill water, reducing the chemical oxygen demand (COD) value by 80% in the bioreactor tank equipment for 24 h [94]. A recent study carried out a combination of the characteristics present in the oleaginous yeast Y. lipolytica associated with fungal lipases, precisely because they have high activity for the treatment of oily effluents. The functional domain of Saccharomyces cerevisiae resulted in a significant decrease in the removal of chemical oxygen demand (COD) by 91.8%, demonstrating its effectiveness [95]. In addition, Y. lipolytica has also been highlighted in studies in palm oil mills [96,97,98], pineapple residues [99], and fish residues in a solid state [100]. This is because this yeast has potential applications in different conditions and has a variety of wild-type, recombinant, or mutant strains [78].
In this way, we observe the valuable contribution of Y. lipolytica in the ecological management of waste or effluents that cause pollution, minimizing the impacts caused by improper disposal in the environment and enabling alternative ways to reuse some of these wastes as new products, contributing as an essential factor in biotechnological processes based on “green” methods with a focus on reducing environmental impacts [31]. Several studies are being carried out in order to minimize the impacts caused, such as reducing toxicity and improving biodegradability [101,102]. Lipases are efficient in treating oily effluents, but they have variables that do not make them viable for large-scale applications, such as instability and solubility, which is why the enzymatic immobilization process is necessary. Y. lipolytica emerges as a suitable microorganism to be used, as it has advantages such as remaining alive in oily effluents for prolonged periods [96,103].
Y. lipolytica yeast is also present in scientific studies aimed at the possibility of application in treating hydrophobic industrial waste, especially waste from the food industry [31]. Although Y. lipolytica is not considered pathogenic, it can cause infections in patients with low immunity who have a disease, such as immunocompromised people [104]. As one of its characteristics, Y. lipolytica can degrade hydrophobic substrates, so for the scientific branch of the food area, it becomes attractive for applications in waste management. Some of its strains can be found in products such as in some types of cheese [105] or environments with a significant amount of fats or hydrocarbons [106]. Because it has several characteristics favorable to Y. lipolytica, it can be used to purify palm oil effluents (POME), which have lignocellulosic residues and a mixture of carbohydrates and oil in their composition. Incomplete extraction of POME can directly affect the increase in COD values and biochemical oxygen demand (BOD). COD [97] causes significant impacts when there is no proper treatment of effluents before they are released into nature.
It is verified that the use of Y. lipolytica in the biotechnology area has good future perspectives, with significant growth of applications in several areas, especially enzymatic engineering for improvements in industrial processes. In the area of industrial waste management, this yeast has also been applied, and this is due to the commitment to paper in different conditions to which it is subjected since it can also be applied in a wide range of pHs and at different temperatures, depending on the conditions under which they were obtained and cultivated. The function of yeast Y. lipolytica in environmental applications becomes increasingly necessary because it presents excellent environmental benefits, reducing the risks caused by pollution from various industrial applications. Figure 6 below is a diagram of the main applications of the lipases from Y. lipolytica.
Table 2 shows 17 types of environmental and industrial applications of different Y. lipolytica strains that were selected, with results already consolidated and exemplified in the studies. The 17 articles were selected to demonstrate that over the years, as the studies are relatively current, there have been advances in the study of Y. lipolytica in several areas and with different application methodologies. Although most of these studies are still limited to the laboratory, they all have great future perspectives of promising results in large-scale environmental and industrial applications in an economically viable way.
Microbial biosynthesis has been gaining ground in the scientific community, especially in applications for the production of biofuels. Y. lipolytica is one of the microorganisms tested for these applications, as it consumes hydrophobic substrates and produces different lipases that help in the production of biofuels based on fatty acids [122]. The production of biofuels from OMs is widely accepted because their applications are considered favorable since they have vast metabolic diversity, which allows them to make use of different substrates, in addition to some being used as direct raw material for the production of biofuels, such as microalgae and [123] the widely known yeast Saccharomyces cerevisiae, which is also used in the production of biofuels such as ethanol and biodiesel [124,125]. It is in this context that Y. lipolytica is being progressively more analyzed for its biotechnological applications due to its facile consumption of hydrocarbons [126] and the ability of this yeast to generate different types of lipase that can be used as biocatalysts in biodiesel production, accumulating a significant amount of lipids.
It is valid to analyze that Y. lipolytica has many more environmental than industrial applications, especially in the bioremediation of areas contaminated by different types and sources of oils, whether aquatic or terrestrial [83], as well as in applications as a detoxifier of heavy metals such as Cu (II) [78] and Ni (II) [31] in wastewater. In industrial applications, it can be demonstrated in the production of citric acid [101] and in the production of γ-decalactone as peach flavoring [102]. Thus, recently, it has become one of the most studied yeasts. Due to massive demand in the search for alternative mechanisms for more sustainable, cheap, and safe production, as well as methodologies capable of being applied in large-scale production, and based on the results of recent studies, Y. lipolytica has become entirely viable.

5. Preparation of Immobilized Biocatalysts of Lipases from Y. lipolytica

The immobilization of Y. lipolytica lipase is a widely used strategy to produce biocatalysts with high stability and reuse capability, in addition to allowing their application in different industrial processes [127,128]. Below are the main steps for preparing immobilized lipase from Y. lipolytica biocatalysts, as shown in Figure 7.
Lipase selection: The first step is the selection of the suitable lipase for the process in question. Different strains of Y. lipolytica present lipases with different characteristics, such as thermal stability and activity in different pHs and organic solvents [129,130].
Lipase extraction: Lipase can be extracted from yeast cells under study using different methods, such as organic solvents or fermentation in a liquid medium. After extraction, the lipase is purified by different techniques, such as affinity chromatography or solvent precipitation [131,132,133,134,135].
Support preparation: The support chosen for lipase immobilization must have the appropriate characteristics for the process in question, such as stability in different pHs and temperature conditions, representing chemical groups that can be used to fix the enzyme [136,137,138]. Examples of supports include silica, cellulose, agarose, and polyacrylamide [139,140,141,142,143,144,145,146,147,148,149,150,151,152].
Immobilization of lipase: Lipase can be immobilized on the support by different methods, such as adsorption, covalent binding, or cross-linking [153,154,155,156,157]. The method chosen depends on the lipase characteristics and the support [158,159,160,161,162,163,164,165].
Characterization of the biocatalyst: The immobilized biocatalyst must be characterized to determine its activity, stability, and reuse capability under different pHs, temperatures, and organic solvents [166,167]. Spectrophotometric or titrimetric methods can measure enzyme activity, while stability and reuse capability can be assessed through long-term assays [168,169,170,171,172,173].
Application of the biocatalyst: The immobilized biocatalyst can be used in different industrial processes, such as biodiesel production, synthesis of esters, and hydrolysis of fats and oils, among others [20,174,175,176,177,178,179,180,181].
Finally, the preparation of immobilized lipase biocatalysts from Y. lipolytica involves the selection of a suitable lipase, the extraction and purification of the enzyme, the preparation of the support, the immobilization of the lipase, the characterization of the biocatalyst, and its application in industrial processes [182,183]. This strategy is a promising alternative to produce biocatalysts with high stability and reuse capability in different chemical processes [184].

5.1. Lipases from Y. lipolytica Immobilization

Immobilization attaches an enzyme to a solid support such as a polymer, matrix, or resin [185]. Enzyme immobilization can improve their stability, activity, and reuse capability, making them more attractive for industrial use [4]. The immobilization of Y. lipolytica lipase is a widely used technique in the production of biocatalysts [186].
Several lipase immobilization techniques include physical, chemical, and biological factors [187,188,189]. In physical immobilization, the enzyme is adsorbed onto the surface of the solid support, while in chemical immobilization, the enzyme is covalently attached to the support [190,191,192,193]. In biological immobilization, the enzyme is encapsulated in a polymeric matrix, such as alginate [194]. Thus, immobilizing Y. lipolytica, lipase can improve its thermal and pH stability, increase its activity, and reduce inhibition by compounds in the reaction medium [195]. In addition, lipase immobilization can allow its reuse in several reaction cycles, reducing the process’s cost [16].
Figure 8 shows a schematic that demonstrates some of the methods of enzyme immobilization, dividing them into chemical and physical techniques.
Y. lipolytica lipase immobilization depends on the characteristics of the industrial process to be applied [196,197]. Some of the most used supports are silica, cellulose, and chitosan [139,198,199,200,201]. The type of support can influence the stability and activity of the immobilized enzyme, as well as the ease of separating the enzyme from the final product [202].

5.1.1. Immobilization of Lipases from Y. lipolytica on Hydrophobic Supports

Hydrophobic supports are materials with a low affinity for water and a high affinity for hydrophobic compounds [203]. They are widely used in enzymatic immobilization, as they allow the enzyme to be fixed on its surface while reducing the inhibition of enzymatic activity by hydrophobic compounds present in the reaction medium [204,205,206]. Below are some examples of hydrophobic supports for enzyme immobilization.
Styrene-divinylbenzene resins (SDB) are widely used to immobilize lipases and other hydrolytic enzymes in the oils and fats hydrolysis process [207]. SDB resins are characterized by having a porous and hydrophobic structure, which facilitates the adsorption of the enzyme on its surface [208]. Modified silicas are commonly applied in immobilizing hydrolytic enzymes in processes in the aqueous medium [209]. Modifying silica with hydrophobic groups such as methyl or propyl groups increases its affinity for hydrophobic compounds, reducing the inhibition of enzymatic activity [210,211].
Polyesters are also applied in the immobilization of hydrolytic enzymes in processes involving the hydrolysis of esters [212,213]. Polyesters are characterized by having a hydrophobic chain, which increases their affinity for hydrophobic compounds, enabling better enzyme–support interaction [214,215]. Octyl-agarose is widely used to immobilize hydrolytic enzymes, focusing primarily on lipases [216]. Octyl-agarose is characterized by having a well-defined hydrophobic chain, which enhances its affinity for hydrophobic compounds, avoiding problems that result in the reduction of enzymatic activity due to the influence of the support itself [217,218].
The immobilization of Y. lipolytica lipase on hydrophobic supports is used in several industrial processes [219,220]. This approach involves enzyme immobilization on supports with hydrophobic properties, such as styrene-divinylbenzene resins, modified silicas, and polyesters [221,222]. This immobilization can improve enzyme stability under extreme conditions, such as high temperatures and low water activity [223,224]. Furthermore, these supports can reduce enzyme inhibition by hydrophobic compounds present in the reaction medium [225].
The use of hydrophobic supports can be carried out through physical and chemical immobilization techniques [226]. In physical immobilization, the enzyme is adsorbed on the surface of the support, while in chemical immobilization, the enzyme is covalently attached to the support [227,228]. The choice of hydrophobic support for the immobilization of Y. lipolytica lipase depends on the properties of the reaction medium and the conditions of the process to be applied [229,230]. For example, immobilization on styrene-divinylbenzene resins is more suitable for the hydrolysis of oils and fats under acidic conditions, while immobilization on modified silicas is more suitable for processes in aqueous media [231,232,233].

5.1.2. Use of Heterobifunctional Supports to Prevent Enzyme Release

Heterofunctional supports are materials used in enzymatic immobilization with more than one chemical function on their surface [234,235]. These supports allow the enzyme to be fixed through covalent or non-covalent interactions with the different chemical functions present on its surface [236]. This results in more stable and long-lasting enzyme immobilization, allowing correct orientation to catalyze the desired reaction [237]. Below are some examples of heterofunctional supports for enzymatic immobilization.
Agarose activated with epoxy groups: Agarose activated with epoxy groups has epoxy groups on its surface that can fix the enzyme through nucleophilic addition reactions [238,239]. This matrix can immobilize nucleophilic enzymes such as amine or thiol groups [240,241].
Activated silica with amino groups: Activated silica with amino groups has amino groups on its surface that can be used to fix the enzyme through cross-linking reactions with bifunctional binding agents, such as Glutaraldehyde [242]. This matrix can be used to immobilize enzymes that have carboxylic or aldehyde groups [243].
Cellulose activated with cyano groups: Cellulose with cyano groups has cyano groups on its surface that can fix the enzyme through cross-linking reactions with bifunctional linking agents, such as dicyanobenzene [244,245]. This matrix can be used to immobilize enzymes that have nucleophilic groups [246].
Silica activated with thiol groups: Silica activated with thiol groups has thiol groups on its surface that can fix the enzyme through cross-linking reactions with bifunctional linking agents, such as N-succinimidyl 3-(2-pyridyldithio) propionate [247]. This matrix can be used to immobilize enzymes that have amine or maleimide groups [248].
In summary, using heterofunctional supports in enzymatic immobilization is essential because it allows greater efficiency and specificity in enzyme fixation [249,250,251], which results in more excellent stability and reuse capability, in addition to allowing the creation of multifunctional systems [252]. These systems lead to the performance of several consecutive reactions based on the possibility of immobilizing several different enzymes on the same support [253].

5.1.3. Modulation of Lipases from Y. lipolytica Properties via Immobilization on Different Supports

Lipases can be modulated according to how they were immobilized and the wide range of possible supports used for immobilization [253,254,255,256]. These different supports generate benefits that allow enzymatic biocatalysts to be applied in several industrial operations [257,258,259]. Y. lipolytica, although it has multiple biotechnological applications, its cell size and morphology require a thorough investigation to select suitable supports for immobilization and modulation [83]. In this sense, superficial adaptations, with activations and functionalizations of metallic supports and those based on silica, cellulose, and chitosan, have been showing promising results in the mutation of Y. lipolytica [260,261].
Akil et al. [16] immobilized Y. lipolytica via physical adsorption on magnetic nanoparticles (MNPs) of Fe3O4 trapped in Ca alginate and obtained better stability results in temperature and pH ranges compared to the free enzyme. In addition, free lipase showed a strict profile of 1,3-regioselectivity in homogeneous and heterogeneous TAGs. In the immobilized form, the hydrolysis rate and regioselectivity sn-1,3 decreased [16]. Other researchers also showed better stability results for Y. lipolytica in temperature and pH when immobilized in MNPs, in addition to allowing rapid biocatalyst reuse when subjected to a magnetic field [262,263].
Mesoporous silica-based supports can imprison Y. lipolytica in an electrostatic immobilization that insignificantly decreases the activity of the lipase when compared to the original free lipase, as it enables immobilization that allows more active sites without being occupied in immobilization [264]. Rios et al. [253] immobilized Y. lipolytica on a support based on silica SBA-15, which has a hexagonal structure and managed to obtain high immobilization yields (>90%) when compared to the immobilization of lipase on commercial supports (Celite 535 and Silica Gel 60) [253]. Wang et al. [265] immobilized Y. lipolytica in silicatein, where it showed an aggregation of almost 100%, forming a biosilica–yeast hybrid material, where it can achieve greater efficiency in the removal of chromium and n-hexadecane ions (above 99%) compared to free lipases [265].
Cellulose-based supports have high chemical purity and can bring unique modular benefits in the immobilization of enzymes [266,267]. Zywicka et al. [244] increased citric acid yield by modulating Y. lipolytica with carriers based on bacterial cellulose (BC) [244]. Furthermore, it was shown that BC-modulated yeast utilized more glucose than free lipases. Bacterial cellulose as a modulator of Y. lipolytica is widely used in the food and cosmetics industries, linking benefits associated with low toxicity and high biocompatibility [268,269]. For example, Y. lipolytica was immobilized on bacterial cellulose to improve the production of natural lactone gamma-decalactone (GDL). The authors showed that the maximum concentration of GDL in a culture prepared with lipase biotransformed with cellulose was 3.7 times greater than the medium with an alginate-only carrier [270].
Chitosan has also shown excellent results in lipase immobilization. It is a polyamine with amino and hydroxyl groups, which are reactive to be used in covalent binding with enzymes, providing adequate stabilities to improve the chemical properties of the transporter [271,272]. In this sense, several studies link this carrier to the modulation of Y. lipolytica [273,274]. Pereira et al. [275] immobilized Y. lipolytica by ionotropic gelation with alginate and chitosan as encapsulating agents. It was shown that the optimum reaction temperature for microencapsulated lipase was higher than for free lipase and the optimum pH. A protective effect of the microcapsule was detected in the storage of the enzyme, where after 75 days, 35% of the activity was maintained, while no activity remained in the free enzyme [275].
As shown, enzymatic modulation is vast and necessary, allowing Y. lipolytica to work in different ranges of temperature, pH, and medium, in addition to generating better stability in its storage when compared to free enzymes.

5.2. Physical or Chemical Modification of Y. lipolytica Lipases to Modulate Enzymatic Properties

As mentioned, different strains of Y. lipolytica have different lipases that must be immobilized in a particular way. The physical or chemical modifications necessary for immobilization are directly related to the industrial application that the biocatalyst will perform, working temperature and pH, storage time, operating cycles, and yield of biocatalysis [276,277].
Various supports capable of immobilizing enzymes often require activations, functionalizations, or modifications of their structure in order to carry out physical interactions such as adsorption or entrapment, chemical interactions such as covalent or cross-linked bonds, or heterobifunctional interactions that, in turn, carry out the two forms of immobilization, providing better stability of the biocatalyst [278,279,280].
Supports that do not have a porous or reactive surface need to seek surface modifications, performing a physical modification, such as increasing their porosity, as is the case of mesoporous silica, for enzymatic imprisonment or carrying out chemical modifications, creating reactive groups [138,281,282,283,284]. Among several possible materials capable of carrying out chemical modifications, the epoxy groups, polyethyleneimine (PEI) and glutaraldehyde, deserve to be highlighted. Among these, PEI and glutaraldehyde were successful in immobilizing Y. lipolytica lipases [285].
In a work that aimed to modify surface surfaces, polyurethane foam (PUF) was used to immobilize Lip2 lipase to Y. lipolytica via polyethyleneimine coating (PEI) and glutaraldehyde coupling. It was found that the activity of the immobilized lipases depends on the size of the PEI polymers and the form of glutaraldehyde treatment, with better results obtained for the covalent binding enzyme in PEI-PUF activated by glutaraldehyde (MW 70,000 Da), which had activity 1.7 times higher compared to the same enzyme immobilized without PEI and glutaraldehyde [285].
The physical and chemical modifications of the support for the more efficient immobilization of lipases have been growing more and more through the search for new reactive materials to bind the enzyme, ways to make the material more susceptible to carry out the imprisonment of the enzyme, or even to correlate these two forms of immobilization to obtain better stability of the carrier.

5.3. Co-Immobilization of Lipases from Y. lipolytica and Other Enzymes

Using co-immobilized enzymes creates a multi-enzyme biocatalyst design, producing several kinetic advantages making chemoenzymatic cascade reactions [286,287]. A cascade reaction is when the product of enzyme one serves as enzyme-substrate two and involves multiple sequentially active enzymes in a synthetic pathway [288,289]. Its main advantage is to reduce the reaction delay time; however, this can be critical when the product of the first enzyme is unstable [290,291]. In this sense, co-immobilizing enzymes can generate several technological problems, making them require careful economic analysis to be advantageous [292]. Figure 9 presents some multienzyme immobilization techniques.
Only one study from 1995 was found in the literature associated with the co-immobilization of Y. lipolytica. Mansfeld et al. [293] co-immobilized Investase and Y. lipolytica in complex polyelectrolyte microcapsules prepared from sodium cellulose sulfate and poly (dimethyldialylomonium chloride). The co-immobilized system was subjected to 800–1000 h of continuous fermentation; however, its productivity was not higher than encapsulated Y. lipolytica alone, without invertase. The co-immobilized system’s average citric acid production rate was 0.014 g L−1h−1, while the system without invertase achieved 0.125 and 0.25 g L−1h−1 [293].
Y. lipolytica and other enzymes may present kinetic advantages as long aswhich second enzyme to use and how to carry out the co-immobilization procedure are investigated.

6. Bioreactor Designs for Uses of Lipases from Y. lipolytica

The lipases (E.C.3.1.1.3) produced by Y. lipolytica are of great industrial interest, as they are efficient biocatalysts used in esterification [294], transesterification [295], interesterification [16], and even hydrolysis reactions [296,297]. Among the various applications, their use in obtaining glycerides, aromas, wastewater treatment, and optically active drugs from the kinetic resolution are widely used in organic synthesis [298]. The reuse of these enzymes is another parameter that makes their use even more favorable. The reaction conditions are mild, and for specific substrates, they present high efficiency, being necessary to control the reaction conditions and the excellent choice of the bioreactor [299].
Generally, lipases are produced intracellularly, more attached explicitly to the yeast cell walls, and only then are they excreted into the culture medium when carbon amounts become scarce [300,301]. Y. lipolytica is considered one of the most promising sources due to its ability to metabolize the raw substrate, express genes at very high levels, and secrete proteins on a large scale, parameters that are influenced by the specifications of the bioreactor in question [302].
Considering many favorable substrates for Y. lipolytica to act efficiently, a series of industrial processes emphasizing the application of these lipases have been explored [85]. Thus, an approach focused on developing bioreactors is necessary to maximize efficiency. For this, in addition to reaction parameters such as pH [303], temperature [304], concentration, and composition of the medium [305], other dependent factors can also be evaluated, such as the oxygenation of the medium [306]; all of this is carried out to ensure that these biotechnological processes, in addition to being environmentally friendly, are also economically favorable [307]. In Figure 10, it is possible to highlight some of the main benefits that a well-chosen bioreactor for biocatalysis can present.
The design of these bioreactors is designed to optimize the reaction conditions and increase the biocatalysis yield [308]. Due to the release of lipases occurring to a greater or lesser extent, an efficient bioreactor allows changes in the dependent parameters [309]. Some of these bioreactors can control the oxygenation conditions so that the excretion of these lipases is accentuated; agitation control is employed to increase the surface contact of the enzyme with the substrate in question and temperature control is used to reach the ideal enzymatic activity, and among others [310]. A practical issue is that most of these bioreactors allow the rescue of the enzyme if immobilized quickly, allowing its reuse in successive reactions [40].
Table 3 shows some types of bioreactors and the main applications of lipases produced by Y. lipolytica, showing the versatility of these biocatalysts produced by this yeast and presenting different designs of bioreactors used in biocatalysis.

7. Future Trends

Given the presentation of all this academic and quantitative context exposed above, we observe the insertion and adaptation of Y. lipolytica in different industrial biotechnological applications so that we can question ourselves about future trends in the market for these lipases. An in-depth bibliometric analysis using the right keywords can also generate a reasonable forecast of future trends in the subject. With the bibliometric analysis, it is possible to analyze the keywords that appear the most on the subject, its evolution over time, the possibility of analyzing the most cited articles, and which subjects within the subject have been addressed in recent years. With that, Figure 11, used from the bibliometric analysis carried out on the topic “2. Y. lipolytica context in a bibliometric review”, demonstrates, through keywords and a thematic map, the future perspectives for the theme related to Y. lipolytica. Figure 11a shows the keywords obtained. It is possible to see the formation of five clusters, where the words Y. lipolytica, lipase, and enzymes appear as central themes, making connections with all other themes. Figure 11b shows the keywords obtained and their citation evolution over time. It is possible to observe that lipid production, carbon, and crude glycerol are the most recent themes related to Y. lipolytica. Figure 11c shows a thematic map relating the emerging or declining, essential, niche, and motor themes related to Y. lipolytica. We can see that Y. lipolytica and purification are basic themes related to each other. However, expression and yeast also show up as basic themes in a smaller number of articles. Candida rugosa and hydrolysis are niche topics, along with lipase production and glycerol. The oil and enzymes cluster stands out as the central theme. It generates a motor theme using essential, niche, and emerging themes. One of the future prospects for Y. lipolytica is finding increasingly better ways for it to be used as a free fatty acid catalyst for forming sustainable biofuels, whether used in its free form or immobilized by the various different supports obtained in materials engineering.
Table 4 summarizes the clusters formed with the database used, showing the centrality and density of each cluster and the number of times this cluster was mentioned.
Table 5 summarizes the articles that represent each cluster, with the most cited articles forming the most significant number of nodes and providing the scientific community with a new line of research related to the area. The numbers of each cluster (#oil, #yarrowia-lipolytica, #candida-rugosa lipase, #expression, #lipase production) in front of each article represent the article’s influence on the formation of that specific cluster. The #oil cluster presents itself as a future perspective of the Y. lipolytica theme and is represented by the articles entitled “Two-Step Synthesis of Fatty Acid Ethyl Ester From Soybean Oil Catalyzed By Y. lipolytica Lipase” and “Different Strategies for The Lipase Immobilization On The Chitosan Based Supports And Their Applications.” The first article shows the relationship between the esterification of a solvent-free system and without glycerol release for the production of biodiesel, developing two-step catalysis of soybean oil hydrolysis followed by esterification with Y. lipolytica lipase [316]. The second article deals with a new support for lipase immobilization, intending to generate better lipase stability and used for various purposes [317]. Other future trends regarding Y. lipolytica research can be predicted and correlated with the formation of clusters. For example, an important front is global climate change, which has required all nations to seek to reduce CO2 emissions [318,319]. Thus, there is a constant need to improve technology capable of assisting in the development of renewable energies and zero-emission biofuels, where biotechnological advances in metabolic engineering have already managed to expand, for example, the capacity of Y. lipolytica to degrade these carbon sources [320,321,322]. In addition, this adaptive and receptive capacity brings a range of studies aimed at its genetic improvement.

8. Patents with Lipases from Y. lipolytica

Notably, the volume of bibliographic material about Y. lipolytica is significant, and since 2013, more than 100 articles have been published annually. Subjects such as genetic sequencing, genomic scale modeling, and multi-omics approaches have gained notoriety in parallel with Y. lipolytica. In the academic scenario, research on this yeast significantly impacts natural science. In parallel with academia, industrial research has noted the valuable potential of Y. lipolytica for systemic applications within industrial production. In searches by research platforms or robust databases on patents such as the United States Patent and Trademark office—USPTO [329]; II. European-Patent Office—EPO [330] found in 1951—2022 the volume of 7242 international patents containing Y. lipolytica.
It should be noted that the volume of patents granted or filed has increased in just over 30 years, with industries being the main ones responsible for this exacerbated increase, representing over 80% of patents filed or granted, while academia only represents about 16% of that total. This increase is due to the development of engineering or computational tools that allow greater depth in the analysis of this yeast. The graph in Figure 12 presents the above data with greater visibility, showing the growth in the volume of patents over the last 30 years.
It is also noteworthy that some global potentials stand out when these data are related to the countries where the patent was filed. United States, China, and Europe occupy 1st, 2nd, and 3rd place in the ranking of most patents deposited. With the Americans responsible for about 59.18% of the patents granted, the Chinese for 34.63%, and the Europeans responsible for about 5.06%. In Figure 13, the graph presents these data in a visual way and with greater clarity than the data collected from the patent search platforms. It is worth remembering that the fundamental language of the scientific writing of these patents is English, with 7242 patents granted, and 7125 in the other languages reported above. In summary, the patent scenario for Y. lipolytica is encouraging and has been growing vehemently, seeking more and more different applications of this yeast in the industrial field.

9. Conclusions

This work shows that over the years, in academia, several studies have been conducted on using lipases derived from Y. lipolytica. Through these applications that aimed to identify their properties and characteristics in different processes, there was an improvement in the use and more efficient immobilization methods of these lipases in different industrial sectors, where through these advances, their applications are occupying even more space in the area of biotechnology applied in industry and in bioremediation of contaminated areas, which helps to reduce waste generation and treatment of damaged areas.
As we have seen, two of the major industrial powers in the world, the USA and China, currently occupy the rankings with the highest percentages of patents obtained over the past 30 years, so we can say that the search for improvement of the properties of Y. lipolytica should continue steadily. It is a matter of time before its rise happens in a controlled manner, resulting in large-scale production and allowing even more reduction of costs in the process. As we have seen, the role of engineering and computational tools against the discoveries made so far are fundamental and already allow the induction and manipulation of the functions of these lipases and their ability to adapt to different environments. We have left an opening for more and more researchers and students to seek ways to create a control system that can develop the production of Y. lipolytica and its lipases in a unified way for the most significant number of industrial applications.

Author Contributions

Conceptualization, J.L.d.S., M.B.S., F.S.N., V.d.C.B., M.M.R.N., A.K.d.S.B., A.M.d.F., A.L.G.C., P.d.S.S., R.L.F.M., P.G.D.S.J. and J.C.S.d.S.; methodology, J.L.d.S., M.B.S., F.S.N., V.d.C.B., M.M.R.N., A.M.d.F., A.L.G.C., P.d.S.S., R.L.F.M., P.G.D.S.J. and J.C.S.d.S.; software, J.L.d.S., M.B.S., F.S.N., V.d.C.B., M.M.R.N., A.M.d.F., A.L.G.C., P.d.S.S., R.L.F.M., P.G.D.S.J. and J.C.S.d.S.; validation, J.L.d.S., M.B.S., F.S.N., V.d.C.B., M.M.R.N., A.M.d.F., A.K.d.S.B., A.L.G.C., P.d.S.S., R.L.F.M., P.G.D.S.J. and J.C.S.d.S.; formal analysis, J.L.d.S., M.B.S., F.S.N., V.d.C.B., M.M.R.N., A.M.d.F., A.L.G.C., P.d.S.S., R.L.F.M., P.G.D.S.J. and J.C.S.d.S.; investigation, J.L.d.S., M.B.S., F.S.N., V.d.C.B., M.M.R.N., A.M.d.F., A.L.G.C., P.d.S.S., R.L.F.M., P.G.D.S.J. and J.C.S.d.S.; resources, J.L.d.S., M.B.S., F.S.N., V.d.C.B., M.M.R.N., A.M.d.F., A.L.G.C., P.d.S.S., R.L.F.M., P.G.D.S.J. and J.C.S.d.S.; data curation, J.L.d.S., M.B.S., F.S.N., V.d.C.B., M.M.R.N., A.M.d.F., A.L.G.C., P.d.S.S., R.L.F.M., P.G.D.S.J. and J.C.S.d.S.; writing—original draft preparation, F.S.N., M.B.S., A.K.d.S.B., V.d.C.B., F.S.N., J.C.S.d.S., J.L.d.S., M.B.S., F.S.N., V.d.C.B., M.M.R.N., A.M.d.F., A.L.G.C., P.d.S.S., R.L.F.M., P.G.D.S.J. and J.C.S.d.S.; writing—review and editing, J.L.d.S., M.B.S., F.S.N., V.d.C.B., M.M.R.N., A.M.d.F., A.L.G.C., P.d.S.S., R.L.F.M., P.G.D.S.J. and J.C.S.d.S.; visualization, J.L.d.S., M.B.S., F.S.N., V.d.C.B., M.M.R.N., A.M.d.F., A.L.G.C., P.d.S.S., R.L.F.M., P.G.D.S.J. and J.C.S.d.S.; supervision, J.C.S.d.S.; project administration, J.C.S.d.S.; funding acquisition, J.C.S.d.S. All authors have read and agreed to the published version of the manuscript.

Funding

This research received no external funding.

Institutional Review Board Statement

Not applicable.

Informed Consent Statement

Not applicable.

Data Availability Statement

Not applicable.

Acknowledgments

We gratefully acknowledge the following Brazilian Agencies for Scientific and Technological Development: Fundação Cearense de Apoio ao Desenvolvimento Científico e Tecnológico (FUNCAP) (PS1-0186-00216.01.00/21), Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq) (307454/2022-3), and Coordenação de Aperfeiçoamento de Ensino Superior (CAPES) (finance code 001).

Conflicts of Interest

The authors declare no conflict of interest.

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Figure 1. (a) Ribbon representation of the structure of lipase lip2 from Y. lipolytica showing the open and closed form of LID (T88-L105) and indicating the catalytic triad of this enzyme, formed by S162, D230, and H289. (b) Packing of the asymmetric units that form the macromolecule, corresponding to the A–G units, highlighting an orientation plane for better visualization of these units that form the enzymatic complex.
Figure 1. (a) Ribbon representation of the structure of lipase lip2 from Y. lipolytica showing the open and closed form of LID (T88-L105) and indicating the catalytic triad of this enzyme, formed by S162, D230, and H289. (b) Packing of the asymmetric units that form the macromolecule, corresponding to the A–G units, highlighting an orientation plane for better visualization of these units that form the enzymatic complex.
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Figure 2. (a) Map of keywords related to Y. lipolytica between 2000 and 2022. (b) The number of articles related to Y. lipolytica. (c) The number of citations related to Y. lipolytica.
Figure 2. (a) Map of keywords related to Y. lipolytica between 2000 and 2022. (b) The number of articles related to Y. lipolytica. (c) The number of citations related to Y. lipolytica.
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Figure 3. Data were obtained between 2000 and 2022 with the keywords Y. lipolytica and lipase. (a) Several documents were published by each country and obtained by bibliometrics. (b) Co-authorship between countries in the publication, using a minimum of 5 articles per country, obtained by VOSviewer. (c) Production of authors over time, obtained by bibliometrics. (d) Co-authorship between the authors in the publication, using at least 5 articles per author, obtained by VOSviewer. (e) Production of affiliations over time, obtained by the bibliometrics. (f) Co-authorship between affiliations, using a minimum of 5 articles per affiliation, obtained by VOSviewer.
Figure 3. Data were obtained between 2000 and 2022 with the keywords Y. lipolytica and lipase. (a) Several documents were published by each country and obtained by bibliometrics. (b) Co-authorship between countries in the publication, using a minimum of 5 articles per country, obtained by VOSviewer. (c) Production of authors over time, obtained by bibliometrics. (d) Co-authorship between the authors in the publication, using at least 5 articles per author, obtained by VOSviewer. (e) Production of affiliations over time, obtained by the bibliometrics. (f) Co-authorship between affiliations, using a minimum of 5 articles per affiliation, obtained by VOSviewer.
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Figure 4. Data were obtained between 2000 and 2022 with the keywords Y. lipolytica and lipase. (a) Country dependency wheel. (b) Three-campus graph correlating countries, authors, and affiliations.
Figure 4. Data were obtained between 2000 and 2022 with the keywords Y. lipolytica and lipase. (a) Country dependency wheel. (b) Three-campus graph correlating countries, authors, and affiliations.
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Figure 5. Analysis of newspapers and articles obtained by bibliometrics. (a) Many articles were published in the 10 newspapers that published the most. (b) Most cited articles on the topic, showing the author, year, and journal in which it was published [15,71,72,73,74,75,76,77,78,79].
Figure 5. Analysis of newspapers and articles obtained by bibliometrics. (a) Many articles were published in the 10 newspapers that published the most. (b) Most cited articles on the topic, showing the author, year, and journal in which it was published [15,71,72,73,74,75,76,77,78,79].
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Figure 6. Applications of the lipases from Y. lipolytica.
Figure 6. Applications of the lipases from Y. lipolytica.
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Figure 7. Representation of the step-by-step procedure of preparing immobilized biocatalysts of lipases from Y. lipolytica.
Figure 7. Representation of the step-by-step procedure of preparing immobilized biocatalysts of lipases from Y. lipolytica.
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Figure 8. Enzyme immobilization methods.
Figure 8. Enzyme immobilization methods.
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Figure 9. Three techniques for multi-enzyme immobilization.
Figure 9. Three techniques for multi-enzyme immobilization.
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Figure 10. Main benefits of a bioreactor in conventional enzymatic catalysis reactions, from its operational issues to the optimization of specific parameters.
Figure 10. Main benefits of a bioreactor in conventional enzymatic catalysis reactions, from its operational issues to the optimization of specific parameters.
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Figure 11. Data were obtained between 2000 and 2022 with the keywords Y. lipolytica and lipase. (a) Network visualization with cluster-forming keywords; minimum occurrences of keywords 5, 2387, and 197 meet the threshold. (b) Overlay visualization with cluster-forming keywords; minimum occurrences of a keyword 5, 2387, and 197 meet the threshold. (c) Thematic map of the clusters formed from the keywords.
Figure 11. Data were obtained between 2000 and 2022 with the keywords Y. lipolytica and lipase. (a) Network visualization with cluster-forming keywords; minimum occurrences of keywords 5, 2387, and 197 meet the threshold. (b) Overlay visualization with cluster-forming keywords; minimum occurrences of a keyword 5, 2387, and 197 meet the threshold. (c) Thematic map of the clusters formed from the keywords.
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Figure 12. Primary graphic: number of patents by interval in years.
Figure 12. Primary graphic: number of patents by interval in years.
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Figure 13. Graphic Y- Percentage of patents by region.
Figure 13. Graphic Y- Percentage of patents by region.
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Table 1. Most cited articles related to Y. lipolytica.
Table 1. Most cited articles related to Y. lipolytica.
PaperTotal CitationsTC per YearNormalized TCReference
FICKERS P, 2005, FEMS YEAST RES43622.955.62[71]
PAPANIKOLAOU S, 2002, J Appl. MICROBIOL25611.641.06[72]
BILAL M, 2018, Int. J Biol. MACROMOL23739.508.26[73]
CAMMAROTA MC, 2006, Bioresour. TECHNOL22612.563.52[74]
NICAUD JM, 2002, FEMS YEAST RES22510.230.94[75]
YANG Z, 2018, BIOTECHNOL. ADV17228.675.99[76]
NGUYEN HM, 2011, PROTEOMICS16913.003.92[77]
FICKERS P, 2011, BIOTECHNOL. ADV16612.773.85[15]
BANKAR AV, 2009, Appl. MICROBIOL BIOTECHNOL16511.003.58[78]
DULERMO T, 2011, METAB ENG16512.693.82[79]
TC: Total Citations.
Table 2. Applications and results of Y. lipolytica.
Table 2. Applications and results of Y. lipolytica.
Y. lipolyticaApplicationsResultsReferences
Y. lipolytica ATCC20255Waste water from oil mills (OMW)80% reduction in COD in 24 h[94,107]
Y. lipolytica strain W29Biodegradation of oily effluentsDegradation of oil and DOC by immobilized cells in 82%[107]
Y. lipolytica—strains M1 e M2Agroindustrial effluentsHigh activity of lipases in medium containing olive oil and production of citric acids in the fermentation medium[103]
Y. lipolytica IMUFRJ 50862Crude oilBiodegradation of organic compounds[108]
Y. lipolytica IMUFRJ 50862Production of Citric Acid in
 Different Crude Glycerol Concentrations
 and in Different Nitrogen Sources
The production of citric and isocitric acids was equal to 12.94 g/L and 6.66 g/L, respectively, in 160 h of
 fermentation for the test that contained 45 g/L of glycerol
[109]
Y. lipolytica (YlCPR)Biotransformation of steroidsBiotransformations of hydrophobic substrates in biphasic two-liquid systems[110]
Y. lipolytica NBRC 1658Contaminating dyesDiscoloration of Reactive Black 5 dye by 97% at 50 mg/L in 24 h[111]
Y. lipolytica (DSM 3286)γ-decalactone production60% increase in γ-decalactone production[112]
Y. lipolytica lipase Lip2production
 of concentrates of docosahexaenoic acid ethyl ester
In the highest concentrations of DHA ethyl ester (77%) and ω-3 esters (81%) with a recovery of 94% and 77%, respectively[113]
Y. lipolytica NRRL YB-567creating novel strains with enhanced ammonia and oil production on protein and carbohydrate substratesThe strain produced 0.12 g/L ammonia and 0.20 g/L
 2-phenylethanol, a valuable fragrance/flavoring, in addition to acylglycerols (oil) containing predominantly C16 and C18 residues. These mutant strains will be investigated further for potential application in commercial biodiesel
 production
[114]
Y. lipolytica TISTR 5151Palm oil effluents (POME)High cell-bound lipase activity for possible biodiesel production through direct transesterification[115]
Y. lipolytica lipase Ylip2Immobilization for the biocatalytic
synthesis of phytosterol ester in a water activity-controlled reactor
Celite retained 90%
esterification activity for the synthesis of phytosterol oleate after being reused for 8 cycles; time yield increased from 1.65 g/L/h with free lipase to 2.53 g/L/h with immobilized lipase
[116]
Y. lipolytica MIUG D14bioconversion of raw palm fat for antimicrobials productionThe best results were obtained at 25 degrees C, a(w) 0.98, after 7 days of solid-state cultivation[117]
Y. lipolytica Wratislavia 1.31 Application as a prospective approach for the biosynthesis of pyruvic acid from glycerolUnder optimal conditions, Y. lipolytica Wratislavia 1.31 was able to produce 85.2 g L−1 of PA with volumetric productivity of 0.90 g L−1 h (−1). The yield of PA biosynthesis reached a high level of 1.03 gg (−1)[118]
lipase of Y. lipolytica produced by SSFSynthesis of Different Esters Used in the Food IndustryThis work showed the high potential of Y. lipolytica lipase to
be used in the synthesis of different esters. It can be considered an attractive
and economical process alternative to obtain high-added-value products
[119]
Y. lipolytica ATCC 9773Dairy wasteBiodegradation of fats and total solids and reduction of BOD and COD[120]
Y. lipolytica (CLIB 40)Tuna Wash Processing Wastewater Treatment (TWPW)Reduction of TWPW pollution levels within 7 days of incubation and reduction of BOD, COD, and TOC[121]
COD: Chemical Oxygen Demand; BOD: Biological Oxygen Demand; TOC: Total Organic Carbon.
Table 3. Bioreactors used in enzymatic reactions with lipases produced by the organism Y. lipolytica and their main chemical and biotechnological applications.
Table 3. Bioreactors used in enzymatic reactions with lipases produced by the organism Y. lipolytica and their main chemical and biotechnological applications.
Bioreactor DesignsReactionReferences
Repeated-batch bioreactorsProduction of citric acid with high reaction yields[311]
Airlift and stirred tank
bioreactors
Production of aromas from vegetable oils[312]
Fibrous bed bioreactorGreen and sustainable succinic acid production from crude glycerol[313]
Shaker flask with attached bioreactorProduction of very-long-chain wax esters[314]
Aeration and inspiring bioreactorAseptic production of citric and isocitric acid from crude glycerol[315]
Table 4. Formation of clusters obtained by keywords related to Y. lipolytica.
Table 4. Formation of clusters obtained by keywords related to Y. lipolytica.
ClusterCentralityDensityRank CentralityRank DensityCluster Frequency
#yarrowia-lipolytica0.57735.269652662
#expression0.37424.575241281
#oil0.35356.019033269
#lipase production0.19176.395624198
#candida-rugosa lipase0.05487.911315104
Table 5. Articles that promoted the formation of clusters obtained by keywords related to Y. lipolytica.
Table 5. Articles that promoted the formation of clusters obtained by keywords related to Y. lipolytica.
TitleSourceYearTC#Oil#Yarrowia-lipolytica#Candida-rugosa lipase#Expression#Lipase ProductionReference
Engineering Strategies For Enhanced Production Of Protein And Bio-Products In Pichia Pastoris: A ReviewBiotechnology Advances201817200.1670.83300[76]
Yeast Lipases: Enzyme Purification, Biochemical Properties And Gene CloningElectronic Journal Of Biotechnology200615700.4950.50500[323]
Molecular And Functional Diversity Of Yeast And Fungal Lipases: Their Role In Biotechnology And Cellular PhysiologyProgress In Lipid Research201592000.72200.278[324]
Exploring The Conformational States And Rearrangements Of Yarrowia lipolytica LipaseBiophysical Journal20108600.2340.6030.1640[325]
Technical Methods To Improve Yield, Activity And Stability In The Development Of Microbial LipasesJournal Of Molecular Catalysis B-Enzymatic20105600.4270.57300[326]
Two-Step Synthesis Of Fatty Acid Ethyl Ester From Soybean Oil Catalyzed By Yarrowia lipolytica LipaseBiotechnology For Biofuels2011500.39200.60800[316]
Different Strategies For The Lipase Immobilization On The Chitosan Based Supports And Their ApplicationsInternational Journal Of Biological Macromolecules2021480.1930.0750.73200[317]
Improvement Of Yarrowia lipolytica Lipase Enantioselectivity By Using Mutagenesis Targeted To The Substrate Binding SiteChembiochem20094700100[327]
New Efficient Lipase From Yarrowia lipolytica For The Resolution Of 2-Bromo-Arylacetic Acid EstersTetrahedron-Asymmetry20044500.1110.88900[328]
Improving The Activity And Stability Of Yarrowia lipolytica Lipase Lip2 By Immobilization On Polyethyleneimine-Coated Polyurethane FoamJournal Of Molecular Catalysis B-Enzymatic20134300100[285]
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MDPI and ACS Style

da Silva, J.L.; Sales, M.B.; de Castro Bizerra, V.; Nobre, M.M.R.; de Sousa Braz, A.K.; da Silva Sousa, P.; Cavalcante, A.L.G.; Melo, R.L.F.; Gonçalves De Sousa Junior, P.; Neto, F.S.; et al. Lipase from Yarrowia lipolytica: Prospects as an Industrial Biocatalyst for Biotechnological Applications. Fermentation 2023, 9, 581. https://doi.org/10.3390/fermentation9070581

AMA Style

da Silva JL, Sales MB, de Castro Bizerra V, Nobre MMR, de Sousa Braz AK, da Silva Sousa P, Cavalcante ALG, Melo RLF, Gonçalves De Sousa Junior P, Neto FS, et al. Lipase from Yarrowia lipolytica: Prospects as an Industrial Biocatalyst for Biotechnological Applications. Fermentation. 2023; 9(7):581. https://doi.org/10.3390/fermentation9070581

Chicago/Turabian Style

da Silva, Jessica Lopes, Misael Bessa Sales, Viviane de Castro Bizerra, Millena Mara Rabelo Nobre, Ana Kátia de Sousa Braz, Patrick da Silva Sousa, Antônio L. G. Cavalcante, Rafael L. F. Melo, Paulo Gonçalves De Sousa Junior, Francisco S. Neto, and et al. 2023. "Lipase from Yarrowia lipolytica: Prospects as an Industrial Biocatalyst for Biotechnological Applications" Fermentation 9, no. 7: 581. https://doi.org/10.3390/fermentation9070581

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